Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 4.5e-228 794.3 406 100.0
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 4.5e-228 794.3 406 100.0
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 9.4e-218 760.0 407 95.3
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 7.7e-204 713.8 407 90.4
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 7.0e-189 664.1 409 83.6
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.0e-188 662.5 409 82.6
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 2.7e-188 662.1 409 82.4
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.9e-187 658.7 409 82.2
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 7.2e-186 654.1 409 81.7
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.2e-185 653.3 409 81.4
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 3.3e-178 628.6 406 78.3
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 3.3e-178 628.6 406 78.3
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 5.2e-176 621.3 408 78.4
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 9.8e-175 617.1 407 77.6
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 3.7e-174 615.1 408 78.4
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 3.7e-174 615.1 421 76.5
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 1.1e-173 613.6 407 76.7
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 1.8e-173 612.8 406 77.6
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 2.3e-171 605.9 407 77.4
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 2.3e-171 605.9 408 77.5
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 8.6e-171 604.0 402 78.4
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.2e-169 600.1 406 75.4
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.6e-169 599.7 402 76.1
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.1e-169 599.4 406 75.4
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 2.1e-169 599.4 406 75.4
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 2.8e-169 599.0 407 75.4
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 8.0e-169 597.4 407 74.0
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 3.1e-168 595.5 407 75.9
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 5.2e-168 594.7 402 76.4
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 5.2e-168 594.7 406 74.1
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 5.8e-167 591.3 407 74.7
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 7.5e-167 590.9 406 75.1
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 9.8e-167 590.5 401 75.6
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 1.7e-166 589.7 408 74.0
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 2.9e-166 589.0 408 75.5
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 3.7e-166 588.6 407 75.7
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 6.4e-166 587.8 407 72.7
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 1.4e-165 586.6 407 73.7
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.4e-165 586.6 407 74.0
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 1.9e-165 586.3 406 75.9
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 4.1e-165 585.1 407 74.4
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 5.4e-165 584.7 411 73.5
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 5.4e-165 584.7 401 75.6
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 9.2e-165 583.9 411 73.5
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 1.6e-164 583.2 409 73.1
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 2.0e-164 582.8 407 73.5
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 2.0e-164 582.8 402 75.6
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 3.5e-164 582.0 407 73.5
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 3.5e-164 582.0 407 74.4
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 1.0e-163 580.5 407 73.7
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 1.3e-163 580.1 409 74.6
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 2.3e-163 579.3 404 75.2
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.5e-162 576.6 407 74.7
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 1.9e-162 576.2 408 72.1
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 4.3e-162 575.1 408 71.8
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 5.6e-162 574.7 405 73.3
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 5.6e-162 574.7 411 73.2
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 7.3e-162 574.3 402 74.1
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 2.8e-161 572.4 408 72.8
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 6.2e-161 571.2 408 71.1
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 1.1e-160 570.5 392 76.0
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 3.1e-160 568.9 407 71.7
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 8.9e-160 567.4 407 72.0
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 8.9e-160 567.4 439 68.6
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.5e-159 566.6 408 73.3
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 9.9e-159 563.9 409 72.1
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 2.2e-158 562.8 405 71.4
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.2e-158 562.8 402 72.4
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 5.4e-157 558.1 452 65.3
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 1.2e-156 557.0 402 72.6
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 1.2e-156 557.0 403 72.5
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 1.6e-156 556.6 407 70.0
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 2.1e-156 556.2 403 72.0
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 4.6e-156 555.1 403 72.5
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 2.3e-155 552.7 407 70.5
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 3.0e-155 552.4 406 70.2
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 3.9e-155 552.0 407 70.5
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 3.9e-155 552.0 402 70.6
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 7.3e-154 547.7 406 70.0
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 1.2e-153 547.0 403 70.7
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 1.6e-153 546.6 401 69.8
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 1.6e-153 546.6 407 69.5
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 1.6e-153 546.6 413 70.0
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 3.6e-153 545.4 402 70.6
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 1.8e-152 543.1 454 64.1
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 2.4e-152 542.7 408 67.6
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 4.0e-152 542.0 400 68.8
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 6.8e-152 541.2 404 71.8
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 1.2e-151 540.4 402 70.4
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.5e-151 540.0 406 69.2
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.5e-151 540.0 406 69.2
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 3.4e-151 538.9 407 68.6
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 4.4e-151 538.5 408 68.9
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 4.4e-151 538.5 402 69.4
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 1.3e-150 537.0 445 66.3
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 2.2e-150 536.2 407 70.3
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 2.9e-150 535.8 407 68.1
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.9e-150 535.0 408 68.6
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.4e-149 532.7 414 67.9
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.4e-149 532.7 433 64.7
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 3.2e-149 532.3 407 67.6
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 5.4e-149 531.6 412 67.2
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 7.1e-149 531.2 407 67.6
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 2.7e-148 529.3 407 66.6
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 3.9e-147 525.4 405 65.9
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 1.6e-145 520.0 408 65.4
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 4.7e-145 518.5 410 69.3
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 1.4e-144 516.9 407 68.6
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 5.2e-144 515.0 408 66.7
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 1.5e-143 513.5 406 66.7
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 2.0e-143 513.1 407 66.8
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 2.6e-143 512.7 407 64.9
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.4e-143 511.9 406 68.2
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 3.9e-139 498.8 401 63.8
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 1.6e-137 493.4 401 64.6
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 1.5e-135 486.9 407 60.7
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 4.9e-134 481.9 418 62.9
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 2.5e-130 469.5 377 63.9
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 3.7e-129 465.7 335 73.7
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.5e-127 458.8 521 52.0
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 5.8e-127 458.4 336 70.5
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 8.7e-123 444.5 376 63.6
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 9.0e-120 434.5 406 57.1
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.2e-119 434.1 295 74.9
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 4.6e-116 422.2 444 56.3
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 1.9e-109 400.2 441 54.2
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 3.2e-109 399.4 408 52.7
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 3.2e-109 399.4 408 52.7
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 1.5e-106 390.6 405 55.1
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 4.5e-95 352.4 400 48.5
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 8.5e-94 348.2 408 53.4
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 9.7e-90 334.7 410 47.1
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 3.1e-80 303.1 205 78.5
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 5.5e-77 292.4 406 47.3
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 4.7e-68 262.7 360 45.6
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 1.2e-66 258.1 432 38.4
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 9.5e-61 238.4 272 52.2
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.8e-60 236.9 301 47.2
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 6.6e-54 215.7 149 75.8
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 7.5e-42 175.6 145 66.9
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 1.5e-29 134.8 103 68.9
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 2.2e-25 120.9 95 62.1
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 2.9e-25 120.6 128 51.6
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.1e-24 118.6 94 63.8
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 2.7e-23 114.0 413 27.1
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.3e-22 110.9 84 69.0
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 5.1e-22 109.8 188 42.6
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 6.6e-22 109.4 69 76.8
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.1e-19 102.1 75 68.0
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 2.4e-16 90.9 397 27.5
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 4.2e-16 90.1 440 25.2
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 4.2e-16 90.1 62 74.2
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 2.1e-15 87.8 69 63.8
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 3.0e-14 84.0 452 23.5
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 6.2e-12 76.3 57 68.4
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 1.9e-08 64.7 117 43.6
Rhsim03G0259700 Rhododendron simsii HOM05D004576 ORTHO05D005321 4.6e-07 60.1 34 76.5
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 2.3e-06 57.8 85 43.5
VMungo0464G1857 Vigna mungo HOM05D004576 ORTHO05D005321 8.7e-06 55.8 41 75.6


User provided reference genes

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