Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1285800 Malus domestica HOM05D000974 ORTHO05D007456 2.7e-172 608.6 313 100.0
MD01G1215900 Malus domestica HOM05D000974 ORTHO05D007456 7.6e-151 537.3 313 88.8
Prupe.2G308000 Prunus persica HOM05D000974 ORTHO05D002201 1.5e-135 486.5 311 83.9
FAN06G4709 Fragaria x ananassa HOM05D000974 ORTHO05D007456 7.4e-122 441.0 313 73.8
FAN10G1776 Fragaria x ananassa HOM05D000974 ORTHO05D007456 9.7e-122 440.7 313 73.8
FvH4_7g31090 Fragaria vesca HOM05D000974 ORTHO05D007456 3.7e-121 438.7 313 73.5
FAN06G0673 Fragaria x ananassa HOM05D000974 ORTHO05D007456 3.7e-121 438.7 313 73.5
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 5.3e-120 434.9 310 73.5
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 5.9e-119 431.4 310 73.2
RcHm_v2.0_Chr1g0380171 Rosa chinensis HOM05D000974 ORTHO05D007456 1.4e-117 426.8 309 72.8
TWI39G1278 Tripterygium wilfordii HOM05D000974 ORTHO05D007456 2.7e-116 422.5 311 72.0
Potri.015G021100 Populus trichocarpa HOM05D000974 ORTHO05D007456 2.0e-114 416.4 310 72.3
Potri.015G021400 Populus trichocarpa HOM05D000974 ORTHO05D007456 2.8e-113 412.5 310 71.9
Potri.012G031000 Populus trichocarpa HOM05D000974 ORTHO05D007456 1.1e-112 410.6 311 71.1
Ciclev10005489m.g Citrus clementina HOM05D000974 ORTHO05D007456 4.5e-111 405.2 314 70.4
Manes.06G157800 Manihot esculenta HOM05D000974 ORTHO05D007456 1.0e-110 404.1 310 69.4
PGR142G2075 Punica granatum HOM05D000974 ORTHO05D007456 3.8e-110 402.1 311 68.2
GSVIVG01028702001 Vitis vinifera HOM05D000974 ORTHO05D007456 9.4e-109 397.5 311 68.2
CsaV3_5G000660 Cucumis sativus L. HOM05D000974 ORTHO05D007456 1.4e-107 393.7 312 67.0
Actinidia34202 Actinidia chinensis HOM05D000974 ORTHO05D007456 1.8e-107 393.3 309 69.3
Lalb_Chr11g0066601 Lupinus albus HOM05D000974 ORTHO05D007456 2.3e-107 392.9 312 67.6
CANSAT21G0519 Cannabis sativa HOM05D000974 ORTHO05D007456 6.7e-107 391.3 321 65.4
AUR62006147 Chenopodium quinoa HOM05D000974 ORTHO05D007456 1.5e-106 390.2 311 67.8
Gohir.D09G178500 Gossypium hirsutum HOM05D000974 ORTHO05D007456 1.5e-106 390.2 311 67.5
ClCG01G000560 Citrullus lanatus HOM05D000974 ORTHO05D007456 3.3e-106 389.0 314 66.2
Thecc.03G193600 Theobroma cacao HOM05D000974 ORTHO05D007456 7.5e-106 387.9 310 69.4
Dinv28331 Davidia involucrata HOM05D000974 ORTHO05D007456 9.7e-106 387.5 253 78.3
vmacro06564 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 9.7e-106 387.5 347 62.2
Sabra12G0020600 Salix brachista HOM05D000974 ORTHO05D007456 1.3e-105 387.1 323 65.6
DCAR_020306 Daucus carota HOM05D000974 ORTHO05D007456 2.2e-105 386.3 312 66.0
Gorai.006G200500 Gossypium raimondii HOM05D000974 ORTHO05D007456 2.2e-105 386.3 311 66.9
Gohir.A09G183700 Gossypium hirsutum HOM05D000974 ORTHO05D007456 6.3e-105 384.8 311 65.9
COL.COLO4_35640 Corchorus olitorius HOM05D000974 ORTHO05D007456 8.2e-105 384.4 311 66.9
Cc02_g01830 Coffea canephora HOM05D000974 ORTHO05D007456 1.4e-104 383.6 312 66.0
Ca_16682_v3 Cicer arietinum L. HOM05D000974 ORTHO05D007456 5.3e-104 381.7 308 64.0
EL10Ac3g05342 Beta vulgaris HOM05D000974 ORTHO05D007456 4.5e-103 378.6 322 64.9
Oeu060978.1 Olea europaea HOM05D000974 ORTHO05D007456 7.7e-103 377.9 312 66.3
TPR.G17305 Trifolium pratense HOM05D000974 ORTHO05D007456 1.7e-102 376.7 309 63.4
Medtr3g090955 Medicago truncatula HOM05D000974 ORTHO05D007456 5.0e-102 375.2 311 63.3
arahy.Tifrunner.gnm1.ann1.D5FDUQ Arachis hypogaea HOM05D000974 ORTHO05D007456 8.5e-102 374.4 311 62.1
arahy.Tifrunner.gnm1.ann1.LG8YER Arachis hypogaea HOM05D000974 ORTHO05D007456 8.5e-102 374.4 311 62.1
Migut.F00239 Erythranthe guttata HOM05D000974 ORTHO05D007456 8.5e-102 374.4 312 64.4
Glyma.06G125900 Glycine max HOM05D000974 ORTHO05D007456 1.9e-101 373.2 311 61.7
Nitab4.5_0005625g0010 Nicotiana tabacum HOM05D000974 ORTHO05D007456 4.2e-101 372.1 310 65.5
Sed0023834 Sechium edule HOM05D000974 ORTHO05D007456 4.2e-101 372.1 314 65.0
CSS0027071 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D007456 5.5e-101 371.7 310 66.1
Glyma.04G238050 Glycine max HOM05D000974 ORTHO05D007456 2.1e-100 369.8 311 61.7
Nitab4.5_0002589g0050 Nicotiana tabacum HOM05D000974 ORTHO05D007456 8.0e-100 367.9 310 64.8
vmacro10108 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 4.0e-99 365.5 308 65.9
Haze_00118 Corylus avellana HOM05D000974 ORTHO05D007456 8.8e-99 364.4 311 64.0
TAR636G3288 Trochodendron aralioides HOM05D000974 ORTHO05D007456 2.6e-98 362.8 311 64.0
Peaxi162Scf00904g00123 Petunia axillaris HOM05D000974 ORTHO05D007456 1.3e-97 360.5 310 63.5
Rhsim09G0204100 Rhododendron simsii HOM05D000974 ORTHO05D007456 1.7e-97 360.1 311 64.3
AUR62019342 Chenopodium quinoa HOM05D000974 ORTHO05D007456 3.1e-96 355.9 315 63.5
Thhalv10005277m.g Eutrema salsugineum HOM05D000974 ORTHO05D007456 3.1e-96 355.9 316 61.1
Rhsim03G0199900 Rhododendron simsii HOM05D000974 ORTHO05D007456 3.1e-96 355.9 311 63.7
A06p34970 Brassica napus HOM05D000974 ORTHO05D007456 5.4e-96 355.1 316 61.1
BraA06t26421Z Brassica rapa HOM05D000974 ORTHO05D007456 5.4e-96 355.1 316 61.1
C07p43580 Brassica napus HOM05D000974 ORTHO05D007456 7.0e-96 354.8 316 61.1
BolC7t44885H Brassica oleracea HOM05D000974 ORTHO05D007456 7.0e-96 354.8 316 61.1
Phvul.009G137800 Phaseolus vulgaris HOM05D000974 ORTHO05D007456 7.0e-96 354.8 312 59.0
BcaNung01212 Brassica carinata HOM05D000974 ORTHO05D007456 1.2e-95 354.0 315 61.6
VMungo1309G2916 Vigna mungo HOM05D000974 ORTHO05D007456 2.7e-95 352.8 317 59.9
AL6G35490 Arabidopsis lyrata HOM05D000974 ORTHO05D007456 3.5e-95 352.4 316 60.4
BcaNung01815 Brassica carinata HOM05D000974 ORTHO05D007456 1.7e-94 350.1 316 60.4
THA.LOC104821367 Tarenaya hassleriana HOM05D000974 ORTHO05D007456 6.6e-94 348.2 314 61.5
AT5G24130 Arabidopsis thaliana HOM05D000974 ORTHO05D007456 1.5e-93 347.1 316 60.4
PSO384G1506 Papaver somniferum HOM05D000974 ORTHO05D007456 7.2e-93 344.7 316 60.1
PSO135G0499 Papaver somniferum HOM05D000974 ORTHO05D007456 9.5e-93 344.4 316 60.1
CARHR189450 Cardamine hirsuta HOM05D000974 ORTHO05D007456 1.6e-92 343.6 316 59.2
Sp2g23180 Schrenkiella parvula HOM05D000974 ORTHO05D007456 1.6e-92 343.6 317 60.3
Lsat_1_v5_gn_9_57980 Lactuca sativa HOM05D000974 ORTHO05D007456 2.3e-91 339.7 314 61.5
SalBow4G2102 Salvia bowleyana HOM05D000974 ORTHO05D007456 5.2e-91 338.6 310 59.7
ECA232G4254 Erigeron canadensis HOM05D000974 ORTHO05D007456 2.6e-90 336.3 310 61.6
Aqoxy7G00132 Aquilegia oxysepala HOM05D000974 ORTHO05D007456 3.4e-90 335.9 317 59.3
HanXRQChr09g0253031 Helianthus annuus HOM05D000974 ORTHO05D007456 5.7e-90 335.1 300 62.0
SGA_v2.0_scaffold192G40573 Striga asiatica HOM05D000974 ORTHO05D007456 5.7e-90 335.1 309 58.9
Lj1A1013G39 Lonicera japonica HOM05D000974 ORTHO05D007456 6.3e-89 331.6 310 60.3
Carub.0006s2186 Capsella rubella HOM05D000974 ORTHO05D007456 1.8e-88 330.1 315 57.1
Psat5g079560 Pisum sativum HOM05D000974 ORTHO05D007456 2.4e-88 329.7 309 57.6
Cpa.g.sc34.147 Carica papaya HOM05D000974 ORTHO05D007456 3.1e-88 329.3 309 59.9
Lj1g0000480 Lotus japonicus HOM05D000974 ORTHO05D007456 3.1e-88 329.3 311 57.2
Atru.chr1.258 Acer truncatum HOM05D000974 ORTHO05D007456 5.4e-88 328.6 311 59.8
Aa31LG11G3400 Aethionema arabicum HOM05D000974 ORTHO05D007456 1.2e-87 327.4 312 56.1
TAR375G0325 Trochodendron aralioides HOM05D000974 ORTHO05D007456 7.3e-85 318.2 313 60.1
unitig_747.g21851 Utricularia gibba HOM05D000974 ORTHO05D007456 3.6e-84 315.8 265 62.6
Duzib084G1361 Durio zibethinus HOM05D000974 ORTHO05D007456 1.0e-83 314.3 311 58.5
Cfa016368 Carpinus fangiana HOM05D000974 ORTHO05D007456 2.0e-82 310.1 312 59.0
Lsat_1_v5_gn_2_134181 Lactuca sativa HOM05D000974 ORTHO05D007456 2.2e-81 306.6 264 59.5
Potri.015G021300 Populus trichocarpa HOM05D000974 ORTHO05D007456 1.4e-80 303.9 205 77.6
Rhsim09G0204200 Rhododendron simsii HOM05D000974 ORTHO05D007456 5.4e-80 302.0 260 61.2
MBI07_g34227_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 2.7e-79 299.7 312 56.1
DCAR_014533 Daucus carota HOM05D000974 ORTHO05D007456 6.0e-79 298.5 311 56.6
HanXRQChr14g0462881 Helianthus annuus HOM05D000974 ORTHO05D007456 2.3e-78 296.6 257 59.9
Lj3A909T48 Lonicera japonica HOM05D000974 ORTHO05D007456 3.9e-78 295.8 280 59.6
SalBow4G1511 Salvia bowleyana HOM05D000974 ORTHO05D007456 3.9e-78 295.8 310 54.5
Oeu060979.1 Olea europaea HOM05D000974 ORTHO05D007456 1.3e-73 280.8 203 71.4
HPP92_005207 Vanilla planifolia HOM05D000974 ORTHO05D007456 2.9e-73 279.6 312 53.8
QL09p010742 Quercus lobata HOM05D000974 ORTHO05D007456 2.3e-67 260.0 243 59.3
Zm00001eb238160 Zea mays HOM05D000974 ORTHO05D007456 3.1e-67 259.6 325 49.8
Nn1g01835 Nelumbo nucifera HOM05D000974 ORTHO05D007456 6.8e-67 258.5 314 49.7
ECA238G2040 Erigeron canadensis HOM05D005084 ORTHO05D006254 4.4e-58 229.2 240 52.5
CDE10G0850 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 4.6e-55 219.2 311 45.3
AagrBONN_evm.TU.Sc2ySwM_117.3541 Anthoceros agrestis HOM05D000974 ORTHO05D007456 7.6e-50 201.8 268 44.8
Zm00001eb345000 Zea mays HOM05D000974 ORTHO05D007456 1.3e-49 201.1 279 44.4
Os05g0586700 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 2.2e-49 200.3 303 42.6
Sopen03g003300 Solanum pennellii HOM05D000974 ORTHO05D007456 1.2e-47 194.5 189 56.6
CiPaw.05G257400 Carya illinoinensis HOM05D000974 ORTHO05D007456 1.7e-46 190.7 132 75.0
PGSC0003DMG400009074 Solanum tuberosum HOM05D000974 ORTHO05D007456 1.1e-45 188.0 209 51.2
Os02g0257200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 7.3e-45 185.3 279 44.8
Mapoly0123s0011 Marchantia polymorpha HOM05D000974 ORTHO05D007456 5.3e-43 179.1 292 40.1
FAN01G0307 Fragaria x ananassa HOM05D000974 ORTHO05D007456 6.4e-41 172.2 313 39.3
MBI07_g45742_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 3.2e-40 169.9 312 40.7
SMO347G0394 Selaginella moellendorffii HOM05D000974 ORTHO05D007456 1.6e-39 167.5 260 41.5
Oeu060977.1 Olea europaea HOM05D000974 ORTHO05D007456 4.3e-37 159.5 119 69.7
Lalb_Chr08g0240561 Lupinus albus HOM05D000974 ORTHO05D007456 2.1e-36 157.1 126 65.9
Pp3c2_19140 Physcomitrium patens HOM05D000974 ORTHO05D007456 2.1e-36 157.1 262 38.5
CiPaw.05G257300 Carya illinoinensis HOM05D000974 ORTHO05D007456 6.2e-36 155.6 147 59.9
Rhsim02G0197500 Rhododendron simsii HOM05D000974 ORTHO05D007456 7.6e-34 148.7 177 48.0
Hma1.2p1_1655F.1_g295980 Hydrangea macrophylla HOM05D000974 ORTHO05D007456 1.0e-33 148.3 193 47.2
Rhsim04G0082700 Rhododendron simsii HOM05D000974 ORTHO05D007456 3.8e-33 146.4 177 47.5
Actinidia08630 Actinidia chinensis HOM05D000974 ORTHO05D007456 1.1e-32 144.8 139 61.9
Lalb_Chr08g0240551 Lupinus albus HOM05D000974 ORTHO05D007456 1.2e-26 124.8 96 62.5
vmacro10109 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 2.2e-25 120.6 159 45.9
Lalb_Chr08g0240541 Lupinus albus HOM05D000974 ORTHO05D007456 1.4e-24 117.9 108 61.1
ATR0589G055 Amborella trichopoda HOM05D000974 ORTHO05D007456 9.3e-24 115.2 120 53.3
Atru.chr1.262 Acer truncatum HOM05D000974 ORTHO05D007456 1.9e-21 107.5 108 58.3
CDE10G0750 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 1.6e-20 104.4 134 46.3
TAR629G1462 Trochodendron aralioides HOM05D000974 ORTHO05D007456 8.2e-20 102.1 68 66.2
Pp3c3_31670 Physcomitrium patens HOM05D000974 ORTHO05D007456 3.1e-19 100.1 158 43.0
ATR0589G008 Amborella trichopoda HOM05D000974 ORTHO05D007456 3.4e-18 96.7 113 52.2
Nn3g19050 Nelumbo nucifera HOM05D000974 ORTHO05D007456 7.2e-08 62.4 106 36.8
DCAR_022594 Daucus carota HOM05D000974 ORTHO05D007456 4.7e-07 59.7 80 51.2


User provided reference genes

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