Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1283300 Malus domestica HOM05D006803 ORTHO05D008552 2.2e-75 285.8 170 100.0
MD01G1213500 Malus domestica HOM05D006803 ORTHO05D008552 3.1e-66 255.4 164 76.8
Prupe.2G305500 Prunus persica HOM05D006803 ORTHO05D008552 7.7e-65 250.8 163 77.9
RcHm_v2.0_Chr1g0379821 Rosa chinensis HOM05D006803 ORTHO05D008552 7.0e-58 227.6 130 83.1
FAN01G0710 Fragaria x ananassa HOM05D006803 ORTHO05D008552 1.7e-56 223.0 131 82.4
FAN06G1048 Fragaria x ananassa HOM05D006803 ORTHO05D008552 1.7e-56 223.0 131 82.4
FAN06G4527 Fragaria x ananassa HOM05D006803 ORTHO05D008552 1.7e-56 223.0 131 82.4
FvH4_7g30800 Fragaria vesca HOM05D006803 ORTHO05D008552 3.8e-56 221.9 131 81.7
QL09p011586 Quercus lobata HOM05D006803 ORTHO05D008552 5.0e-56 221.5 129 80.6
FAN10G2870 Fragaria x ananassa HOM05D006803 ORTHO05D008552 1.5e-55 219.9 131 80.9
FAN03G2299 Fragaria x ananassa HOM05D006803 ORTHO05D008552 1.9e-55 219.5 131 80.2
ClCG05G008590 Citrullus lanatus HOM05D006803 ORTHO05D008552 2.8e-54 215.7 128 80.5
Manes.14G019756 Manihot esculenta HOM05D006803 ORTHO05D008552 2.8e-54 215.7 129 79.1
CiPaw.05G259100 Carya illinoinensis HOM05D006803 ORTHO05D008552 3.6e-54 215.3 127 79.5
MELO3C006968.2 Cucumis melo HOM05D006803 ORTHO05D008552 3.0e-53 212.2 128 78.1
Sed0009140 Sechium edule HOM05D006803 ORTHO05D008552 2.0e-52 209.5 128 77.3
GSVIVG01028745001 Vitis vinifera HOM05D006803 ORTHO05D008552 4.4e-52 208.4 129 76.7
Duzib084G0216 Durio zibethinus HOM05D006803 ORTHO05D008552 1.3e-51 206.8 170 60.0
COL.COLO4_07418 Corchorus olitorius HOM05D006803 ORTHO05D008552 1.7e-51 206.5 170 60.0
vmacro06587 Vaccinium macrocarpon HOM05D006803 ORTHO05D008552 1.7e-51 206.5 135 71.1
Cpa.g.sc3.33 Carica papaya HOM05D006803 ORTHO05D008552 4.9e-51 204.9 124 78.2
Ciclev10006070m.g Citrus clementina HOM05D006803 ORTHO05D008552 4.9e-51 204.9 130 73.1
Thecc.03G190700 Theobroma cacao HOM05D006803 ORTHO05D008552 1.1e-50 203.8 130 74.6
Gohir.D08G108400 Gossypium hirsutum HOM05D006803 ORTHO05D008552 1.8e-50 203.0 130 73.1
Gorai.004G116000 Gossypium raimondii HOM05D006803 ORTHO05D008552 1.8e-50 203.0 130 73.1
Eucgr.K00316 Eucalyptus grandis HOM05D006803 ORTHO05D008552 2.4e-50 202.6 116 84.5
Nn1g01776 Nelumbo nucifera HOM05D006803 ORTHO05D008552 4.1e-50 201.8 116 80.2
Potri.012G033700 Populus trichocarpa HOM05D006803 ORTHO05D008552 4.1e-50 201.8 130 72.3
Duzib205G0804 Durio zibethinus HOM05D006803 ORTHO05D008552 1.6e-49 199.9 130 72.3
Dinv28351 Davidia involucrata HOM05D006803 ORTHO05D008552 2.0e-49 199.5 116 79.3
Hma1.2p1_0327F.1_g126650 Hydrangea macrophylla HOM05D006803 ORTHO05D008552 2.7e-49 199.1 127 74.8
Lj2g0024519 Lotus japonicus HOM05D006803 ORTHO05D008552 2.7e-49 199.1 128 72.7
Hund11694 Selenicereus undatus HOM05D006803 ORTHO05D008552 2.7e-49 199.1 129 72.9
TAR333G0006 Trochodendron aralioides HOM05D006803 ORTHO05D008552 2.7e-49 199.1 105 84.8
TWI14G0759 Tripterygium wilfordii HOM05D006803 ORTHO05D008552 3.5e-49 198.7 133 72.2
CANSAT21G0672 Cannabis sativa HOM05D006803 ORTHO05D008552 4.6e-49 198.4 100 89.0
Atru.chr1.293 Acer truncatum HOM05D006803 ORTHO05D008552 5.9e-49 198.0 136 71.3
TPR.G36689 Trifolium pratense HOM05D006803 ORTHO05D008552 7.8e-49 197.6 130 73.8
Ca_19336_v3 Cicer arietinum L. HOM05D006803 ORTHO05D008552 1.0e-48 197.2 133 72.2
Peaxi162Scf00904g00457 Petunia axillaris HOM05D006803 ORTHO05D008552 1.0e-48 197.2 130 72.3
unitig_37.g11977 Utricularia gibba HOM05D000211 ORTHO05D002285 1.0e-48 197.2 113 77.9
Psat1g097000 Pisum sativum HOM05D006803 ORTHO05D008552 1.3e-48 196.8 129 71.3
Actinidia34181 Actinidia chinensis HOM05D006803 ORTHO05D008552 1.7e-48 196.4 116 79.3
PGR142G1334 Punica granatum HOM05D006803 ORTHO05D008552 1.7e-48 196.4 121 76.9
Gohir.A08G097600 Gossypium hirsutum HOM05D006803 ORTHO05D008552 2.3e-48 196.1 130 70.8
VMungo0464G0281 Vigna mungo HOM05D006803 ORTHO05D008552 3.0e-48 195.7 130 71.5
EL10Ac3g05364 Beta vulgaris HOM05D006803 ORTHO05D008552 5.0e-48 194.9 138 67.4
Carub.0008s1314 Capsella rubella HOM05D006803 ORTHO05D008552 5.0e-48 194.9 116 77.6
THA.LOC104825126 Tarenaya hassleriana HOM05D006803 ORTHO05D008552 6.6e-48 194.5 124 75.0
arahy.Tifrunner.gnm1.ann1.GHK1U8 Arachis hypogaea HOM05D006803 ORTHO05D008552 8.6e-48 194.1 133 69.9
arahy.Tifrunner.gnm1.ann1.V6YLC6 Arachis hypogaea HOM05D006803 ORTHO05D008552 8.6e-48 194.1 133 69.9
Glyma.09G125800 Glycine max HOM05D006803 ORTHO05D008552 1.5e-47 193.4 118 76.3
A10p10450 Brassica napus HOM05D006803 ORTHO05D008552 1.9e-47 193.0 122 74.6
C09p42680 Brassica napus HOM05D006803 ORTHO05D008552 1.9e-47 193.0 122 74.6
BolC9t57144H Brassica oleracea HOM05D006803 ORTHO05D008552 1.9e-47 193.0 122 74.6
BraA10t43128Z Brassica rapa HOM05D006803 ORTHO05D008552 1.9e-47 193.0 122 74.6
Potri.016G123100 Populus trichocarpa HOM05D006803 ORTHO05D008552 3.3e-47 192.2 130 71.5
AL8G27460 Arabidopsis lyrata HOM05D006803 ORTHO05D008552 4.3e-47 191.8 122 73.8
Thhalv10014833m.g Eutrema salsugineum HOM05D006803 ORTHO05D008552 4.3e-47 191.8 122 73.8
AT5G52960 Arabidopsis thaliana HOM05D006803 ORTHO05D008552 5.6e-47 191.4 122 73.8
Sp6g15120 Schrenkiella parvula HOM05D006803 ORTHO05D008552 5.6e-47 191.4 122 74.6
Lsat_1_v5_gn_9_57340 Lactuca sativa HOM05D006803 ORTHO05D008552 7.3e-47 191.0 101 80.2
Sc19g0001080 Simmondsia chinensis HOM05D006803 ORTHO05D008552 7.3e-47 191.0 96 88.5
Phvul.004G101300 Phaseolus vulgaris HOM05D006803 ORTHO05D008552 9.5e-47 190.7 132 69.7
SalBow4G1856 Salvia bowleyana HOM05D006803 ORTHO05D008552 9.5e-47 190.7 130 70.8
SalBow4G1881 Salvia bowleyana HOM05D006803 ORTHO05D008552 9.5e-47 190.7 130 70.8
Cc02_g02040 Coffea canephora HOM05D006803 ORTHO05D008552 1.2e-46 190.3 97 84.5
MBI06_g04289_MAGBIO Magnolia biondii HOM05D006803 ORTHO05D008552 1.2e-46 190.3 108 78.7
Oeu044167.1 Olea europaea HOM05D006803 ORTHO05D008552 1.2e-46 190.3 111 79.3
Sabra15G0018100 Salix brachista HOM05D006803 ORTHO05D008552 1.2e-46 190.3 151 63.6
Aa31LG3G9190 Aethionema arabicum HOM05D006803 ORTHO05D008552 1.6e-46 189.9 122 71.3
Sabra15G0020600 Salix brachista HOM05D006803 ORTHO05D008552 2.1e-46 189.5 151 63.6
Solyc03g007540.3 Solanum lycopersicum HOM05D006803 ORTHO05D008552 2.1e-46 189.5 130 70.8
Sopen03g003500 Solanum pennellii HOM05D006803 ORTHO05D008552 2.1e-46 189.5 130 70.8
ATR0721G182 Amborella trichopoda HOM05D006803 ORTHO05D008552 4.7e-46 188.3 97 84.5
Lj3C914T13 Lonicera japonica HOM05D006803 ORTHO05D008552 4.7e-46 188.3 124 74.2
Rhsim03G0197200 Rhododendron simsii HOM05D006803 ORTHO05D008552 4.7e-46 188.3 102 83.3
SGA_v2.0_scaffold44G16771 Striga asiatica HOM05D006803 ORTHO05D008552 4.7e-46 188.3 111 75.7
Sed0024434 Sechium edule HOM05D006803 ORTHO05D008552 6.2e-46 188.0 128 68.0
Actinidia08612 Actinidia chinensis HOM05D006803 ORTHO05D008552 8.0e-46 187.6 116 75.9
Lalb_Chr01g0009661 Lupinus albus HOM05D006803 ORTHO05D008552 8.0e-46 187.6 137 67.2
HanXRQChr09g0253111 Helianthus annuus HOM05D006803 ORTHO05D008552 1.0e-45 187.2 111 73.9
Medtr6g034205 Medicago truncatula HOM05D006803 ORTHO05D008552 1.0e-45 187.2 129 72.9
PGSC0003DMG400009065 Solanum tuberosum HOM05D006803 ORTHO05D008552 1.0e-45 187.2 130 68.5
CDE04G2534 Ceratophyllum demersum HOM05D006803 ORTHO05D008552 1.4e-45 186.8 116 74.1
CDE03G0029 Ceratophyllum demersum HOM05D006803 ORTHO05D008552 1.8e-45 186.4 130 69.2
TWI39G0241 Tripterygium wilfordii HOM05D006803 ORTHO05D008552 3.1e-45 185.7 114 76.3
CSS0034587 Camellia sinensis var. sinensis HOM05D006803 ORTHO05D008552 5.2e-45 184.9 96 81.2
CAN.G108.11 Capsicum annuum HOM05D006803 ORTHO05D008552 6.8e-45 184.5 131 68.7
Glyma.16G172700 Glycine max HOM05D006803 ORTHO05D008552 6.8e-45 184.5 133 66.2
DCAR_014527 Daucus carota HOM05D006803 ORTHO05D008552 8.9e-45 184.1 126 68.3
Migut.F00254 Erythranthe guttata HOM05D006803 ORTHO05D008552 8.9e-45 184.1 110 74.5
Aqoxy7G00212 Aquilegia oxysepala HOM05D006803 ORTHO05D008552 1.5e-44 183.3 109 75.2
PSO135G0887 Papaver somniferum HOM05D006803 ORTHO05D008552 1.5e-44 183.3 112 74.1
PSO384G2893 Papaver somniferum HOM05D006803 ORTHO05D008552 1.5e-44 183.3 112 74.1
Mapoly0006s0111 Marchantia polymorpha HOM05D006803 ORTHO05D008552 2.6e-44 182.6 97 76.3
ECA232G4170 Erigeron canadensis HOM05D006803 ORTHO05D008552 2.9e-43 179.1 97 82.5
Os05g0569200 Oryza sativa ssp. japonica HOM05D006803 ORTHO05D008552 1.9e-42 176.4 103 75.7
Zm00001eb296320 Zea mays HOM05D006803 ORTHO05D008552 3.2e-42 175.6 103 75.7
SEGI_13941 Sequoiadendron giganteum HOM05D006803 ORTHO05D008552 4.6e-41 171.8 113 69.0
Sabra12G0022800 Salix brachista HOM05D006803 ORTHO05D008552 1.9e-39 166.4 200 46.0
AagrBONN_evm.TU.Sc2ySwM_228.1351 Anthoceros agrestis HOM05D006803 ORTHO05D008552 2.5e-39 166.0 92 76.1
SMO169G0228 Selaginella moellendorffii HOM05D006803 ORTHO05D008552 4.3e-39 165.2 109 66.1
Pp3c4_26620 Physcomitrium patens HOM05D006803 ORTHO05D008552 1.8e-37 159.8 91 73.6
Pp3c26_8430 Physcomitrium patens HOM05D006803 ORTHO05D008552 5.8e-36 154.8 88 73.9
Haze_00093 Corylus avellana HOM05D006803 ORTHO05D008552 9.8e-36 154.1 96 79.2
Nitab4.5_0000472g0050 Nicotiana tabacum HOM05D006803 ORTHO05D008552 2.1e-33 146.4 130 60.0
Nitab4.5_0001331g0090 Nicotiana tabacum HOM05D006803 ORTHO05D008552 4.6e-33 145.2 130 60.0
CBR_g9073 Chara braunii HOM05D006803 ORTHO05D008552 4.3e-31 138.7 110 58.2
CARHR265930 Cardamine hirsuta HOM05D006803 ORTHO05D008552 7.3e-31 137.9 94 64.9
Eucgr.L03342 Eucalyptus grandis HOM05D006803 ORTHO05D008552 7.3e-31 137.9 81 82.7
BcaB08g35659 Brassica carinata HOM05D006803 ORTHO05D008552 1.1e-29 134.0 88 72.7
HPP92_011456 Vanilla planifolia HOM05D006803 ORTHO05D008552 1.2e-25 120.6 65 80.0
Oeu059677.1 Olea europaea HOM05D006803 ORTHO05D008552 4.7e-22 108.6 83 62.7
Oeu008094.1 Olea europaea HOM05D006803 ORTHO05D008552 2.4e-18 96.3 66 66.7
Oeu059693.1 Olea europaea HOM05D006803 ORTHO05D008552 3.5e-17 92.4 66 65.2
Thecc.03G190900 Theobroma cacao HOM05D006803 ORTHO05D008552 1.7e-11 73.6 36 88.9
RcHm_v2.0_Chr1g0379761 Rosa chinensis HOM05D006803 ORTHO05D008552 2.2e-11 73.2 35 94.3
RcHm_v2.0_Chr1g0379751 Rosa chinensis HOM05D006803 ORTHO05D008552 6.7e-08 61.6 53 58.5


User provided reference genes

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