Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 0.0e+00 1392.9 702 100.0
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 0.0e+00 1130.5 703 82.6
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 1.6e-289 999.2 699 74.5
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 2.9e-283 978.4 711 71.7
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 4.1e-277 958.0 701 71.8
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 1.9e-274 949.1 667 76.2
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 6.1e-265 917.5 703 67.7
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 2.8e-262 908.7 712 67.4
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 2.0e-260 902.5 705 67.0
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 5.9e-260 901.0 710 67.2
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 2.2e-259 899.0 707 66.3
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 1.4e-258 896.3 724 66.0
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 1.1e-253 880.2 708 65.4
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 5.9e-252 874.4 713 64.9
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 1.0e-251 873.6 701 64.2
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 2.7e-249 865.5 710 64.5
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 2.7e-249 865.5 701 64.8
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 3.6e-249 865.1 704 65.8
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 6.1e-249 864.4 701 64.6
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 6.1e-249 864.4 701 64.8
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 1.0e-248 863.6 709 64.0
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 9.7e-247 857.1 685 66.4
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 3.5e-244 848.6 705 64.0
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 3.6e-241 838.6 711 61.6
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 8.0e-241 837.4 704 63.2
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 1.5e-239 833.2 705 62.8
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.4e-239 832.0 711 65.8
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 9.8e-239 830.5 661 66.4
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 1.7e-238 829.7 701 63.9
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 6.3e-238 827.8 768 59.8
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.1e-237 827.0 735 63.9
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.1e-237 827.0 735 63.9
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 1.8e-237 826.2 809 58.5
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 5.9e-236 821.2 705 62.3
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 1.3e-235 820.1 706 63.9
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 8.5e-235 817.4 703 62.9
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 2.4e-229 799.3 706 59.9
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 1.6e-228 796.6 713 61.0
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 1.7e-227 793.1 588 70.1
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 1.9e-226 789.6 712 58.3
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.8e-225 785.8 761 60.2
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 3.4e-223 778.9 716 58.1
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 2.2e-222 776.2 706 57.9
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 7.3e-218 761.1 703 59.6
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 8.0e-217 757.7 513 78.0
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 3.1e-216 755.7 732 57.1
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 8.9e-216 754.2 707 59.3
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 3.2e-213 745.7 675 59.7
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 2.5e-210 736.1 711 57.8
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 8.9e-208 727.6 715 58.7
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 1.7e-206 723.4 591 64.8
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 5.2e-200 701.8 707 56.2
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 1.9e-194 683.3 700 54.3
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 3.6e-193 679.1 611 59.1
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 3.1e-192 676.0 573 63.5
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 6.9e-192 674.9 724 55.2
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.0e-191 673.3 573 63.4
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 9.9e-191 671.0 705 53.6
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.7e-188 662.9 489 74.0
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 9.6e-186 654.4 489 73.6
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 3.7e-177 625.9 514 65.2
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 3.7e-177 625.9 514 65.2
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 3.8e-174 615.9 602 56.1
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 3.2e-165 586.3 440 69.8
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 5.5e-165 585.5 489 65.8
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 2.3e-163 580.1 703 45.1
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 3.3e-162 576.2 461 66.6
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 5.3e-160 568.9 381 73.2
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 2.2e-158 563.5 449 66.8
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 8.5e-158 561.6 506 61.7
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 8.5e-158 561.6 525 56.6
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 3.2e-157 559.7 564 57.3
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 2.7e-156 556.6 493 60.4
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 1.5e-154 550.8 493 60.0
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 4.5e-151 539.3 491 59.7
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 1.7e-145 520.8 568 53.5
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 5.5e-133 479.2 417 59.5
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 6.1e-124 449.1 704 39.5
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 1.0e-123 448.4 706 39.5
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 4.0e-123 446.4 480 52.5
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 2.7e-119 433.7 698 37.7
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 1.7e-113 414.5 268 75.7
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.6e-92 344.7 281 63.7
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 2.3e-86 324.3 307 58.3
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 1.4e-80 305.1 169 88.8
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 3.6e-76 290.4 169 82.8
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 1.4e-75 288.5 169 81.7
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 7.1e-72 276.2 192 71.4
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.2e-71 275.4 293 55.6
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 1.0e-70 272.3 151 84.8
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 3.2e-64 250.8 302 47.0
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 4.2e-64 250.4 170 72.4
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 2.3e-62 244.6 344 42.4
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 8.7e-62 242.7 180 66.7
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 9.6e-61 239.2 169 65.7
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 6.2e-60 236.5 169 66.9
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 5.3e-59 233.4 174 66.1
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 1.2e-58 232.3 169 63.9
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 3.4e-58 230.7 169 62.7
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 7.6e-58 229.6 169 62.1
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 1.1e-56 225.7 131 83.2
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 1.1e-56 225.7 171 63.2
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 1.0e-54 219.2 654 28.7
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 9.0e-51 206.1 169 63.3
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 5.8e-50 203.4 268 48.5
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 2.2e-49 201.4 141 68.8
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 6.0e-47 193.4 133 70.7
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 7.9e-47 193.0 133 70.7
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 1.6e-44 185.3 130 65.4
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 2.2e-44 184.9 169 55.0
QL09p011981 Quercus lobata HOM05D005766 ORTHO05D007002 3.1e-43 181.0 103 82.5
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 2.6e-42 177.9 126 69.8
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 2.2e-41 174.9 122 71.3
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 1.4e-40 172.2 130 65.4
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.3e-36 159.1 90 81.1
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 6.3e-36 156.8 114 73.7
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 5.9e-34 150.2 894 22.9
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 3.8e-33 147.5 137 53.3
Cfa000854 Carpinus fangiana HOM05D005766 ORTHO05D007002 2.2e-28 131.7 77 83.1
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 2.8e-28 131.3 210 44.8
CSS0010184 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.6e-26 124.8 78 76.9
Actinidia08608 Actinidia chinensis HOM05D005766 ORTHO05D007002 6.5e-25 120.2 73 79.5
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 8.5e-25 119.8 168 36.3
CSS0002634 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.2e-23 115.9 65 84.6
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 1.8e-19 102.1 69 65.2
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 1.1e-16 92.8 58 74.1
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 2.1e-15 88.6 56 71.4
Peaxi162Scf00603g00414 Petunia axillaris HOM05D007579 ORTHO05D000285 1.1e-11 76.3 44 79.5
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 9.1e-11 73.2 51 58.8
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 3.2e-08 64.7 41 70.7
Oeu023563.1 Olea europaea HOM05D005766 ORTHO05D007002 5.5e-08 63.9 88 43.2
RcHm_v2.0_Chr4g0404071 Rosa chinensis HOM05D005766 ORTHO05D007002 9.4e-08 63.2 34 85.3
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 2.7e-07 61.6 57 50.9
Cc04_g10810 Coffea canephora HOM05D000464 ORTHO05D006292 3.6e-07 61.2 406 21.7
Oeu044897.1 Olea europaea HOM05D005766 ORTHO05D007002 1.0e-06 59.7 88 40.9
Oeu016993.1 Olea europaea HOM05D005766 ORTHO05D007002 1.4e-06 59.3 88 40.9
CSS0035081 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 3.0e-06 58.2 38 73.7


User provided reference genes

Program Settings