Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1281300 Malus domestica HOM05D000419 ORTHO05D248923 2.1e-67 258.8 128 100.0
Prupe.2G303100 Prunus persica HOM05D000419 ORTHO05D001071 5.1e-37 157.9 115 76.5
MD01G1210800 Malus domestica HOM05D000419 ORTHO05D001071 1.1e-36 156.8 94 87.2
RcHm_v2.0_Chr1g0378951 Rosa chinensis HOM05D000419 ORTHO05D001071 3.3e-28 128.6 110 66.4
FAN15G1406 Fragaria x ananassa HOM05D000419 ORTHO05D001071 1.2e-25 120.2 116 61.2
FvH4_2g03830 Fragaria vesca HOM05D000419 ORTHO05D001071 2.6e-25 119.0 110 62.7
FAN24G2635 Fragaria x ananassa HOM05D000419 ORTHO05D001071 2.6e-25 119.0 110 62.7
FAN27G1911 Fragaria x ananassa HOM05D000419 ORTHO05D001071 2.6e-25 119.0 110 62.7
QL09p012182 Quercus lobata HOM05D000419 ORTHO05D001071 7.7e-25 117.5 115 60.9
Cc00_g20000 Coffea canephora HOM05D000419 ORTHO05D001071 2.9e-24 115.5 141 49.6
CANSAT54G1983 Cannabis sativa HOM05D000419 ORTHO05D001071 1.9e-23 112.8 116 60.3
Haze_00072 Corylus avellana HOM05D000419 ORTHO05D001071 3.2e-23 112.1 117 58.1
Duzib084G1201 Durio zibethinus HOM05D000419 ORTHO05D001071 4.2e-23 111.7 110 59.1
Lj5g0025284 Lotus japonicus HOM05D000419 ORTHO05D001071 7.2e-23 110.9 109 59.6
GSVIVG01028809001 Vitis vinifera HOM05D000419 ORTHO05D001071 7.2e-23 110.9 87 69.0
Cfa016318 Carpinus fangiana HOM05D000419 ORTHO05D001071 2.1e-22 109.4 115 58.3
Gohir.A11G224800 Gossypium hirsutum HOM05D000419 ORTHO05D001071 2.7e-22 109.0 113 57.5
Ca_10710_v3 Cicer arietinum L. HOM05D000419 ORTHO05D001071 1.4e-21 106.7 112 59.8
Potri.015G027600 Populus trichocarpa HOM05D000419 ORTHO05D001071 1.4e-21 106.7 103 58.3
Sabra15G0022900 Salix brachista HOM05D000419 ORTHO05D001071 1.4e-21 106.7 90 67.8
PGSC0003DMG400020888 Solanum tuberosum HOM05D000419 ORTHO05D001071 1.4e-21 106.7 108 62.0
CAN.G126.8 Capsicum annuum HOM05D000419 ORTHO05D001071 1.8e-21 106.3 106 62.3
Solyc03g007690.1 Solanum lycopersicum HOM05D000419 ORTHO05D001071 1.8e-21 106.3 108 61.1
TWI23G1016 Tripterygium wilfordii HOM05D000419 ORTHO05D001071 1.8e-21 106.3 92 65.2
Psat6g195440 Pisum sativum HOM05D000419 ORTHO05D001071 2.3e-21 105.9 114 58.8
TPR.G7763 Trifolium pratense HOM05D000419 ORTHO05D001071 2.3e-21 105.9 114 58.8
AUR62021088 Chenopodium quinoa HOM05D000419 ORTHO05D001071 5.2e-21 104.8 84 69.0
AUR62031445 Chenopodium quinoa HOM05D000419 ORTHO05D001071 5.2e-21 104.8 84 69.0
Lalb_Chr02g0141291 Lupinus albus HOM05D000419 ORTHO05D001071 8.8e-21 104.0 119 53.8
DCAR_010649 Daucus carota HOM05D000419 ORTHO05D001071 1.1e-20 103.6 94 62.8
Medtr1g099570 Medicago truncatula HOM05D000419 ORTHO05D001071 2.6e-20 102.4 112 58.0
PGR042G3949 Punica granatum HOM05D000419 ORTHO05D001071 3.3e-20 102.1 114 54.4
CiPaw.08G119000 Carya illinoinensis HOM05D000419 ORTHO05D001071 4.4e-20 101.7 118 57.6
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 4.4e-20 101.7 114 53.5
Aqoxy7G00198 Aquilegia oxysepala HOM05D000419 ORTHO05D001071 5.7e-20 101.3 103 59.2
CsaV3_3G017610 Cucumis sativus L. HOM05D000419 ORTHO05D001071 5.7e-20 101.3 104 58.7
Glyma.20G163500 Glycine max HOM05D000419 ORTHO05D001071 5.7e-20 101.3 115 56.5
Sed0005579 Sechium edule HOM05D000419 ORTHO05D001071 5.7e-20 101.3 121 52.9
Sopen03g003620 Solanum pennellii HOM05D000419 ORTHO05D001071 7.4e-20 100.9 99 63.6
ClCG05G008520 Citrullus lanatus HOM05D000419 ORTHO05D001071 9.7e-20 100.5 118 54.2
COL.COLO4_30275 Corchorus olitorius HOM05D000419 ORTHO05D001071 9.7e-20 100.5 125 52.0
Thecc.03G187000 Theobroma cacao HOM05D000419 ORTHO05D001071 9.7e-20 100.5 114 56.1
CSS0001149 Camellia sinensis var. sinensis HOM05D000419 ORTHO05D001071 1.3e-19 100.1 115 59.1
Actinidia34168 Actinidia chinensis HOM05D000419 ORTHO05D001071 1.7e-19 99.8 118 54.2
Oeu037145.1 Olea europaea HOM05D000419 ORTHO05D001071 1.7e-19 99.8 82 69.5
Gorai.003G070300 Gossypium raimondii HOM05D000419 ORTHO05D001071 2.2e-19 99.4 120 53.3
EL10Ac3g05386 Beta vulgaris HOM05D000419 ORTHO05D001071 2.8e-19 99.0 92 63.0
Manes.06G154000 Manihot esculenta HOM05D000419 ORTHO05D001071 2.8e-19 99.0 116 56.0
THA.LOC104800279 Tarenaya hassleriana HOM05D000419 ORTHO05D001071 3.7e-19 98.6 87 62.1
MELO3C006947.2 Cucumis melo HOM05D000419 ORTHO05D001071 4.8e-19 98.2 108 57.4
PSO135G0194 Papaver somniferum HOM05D000419 ORTHO05D001071 4.8e-19 98.2 93 64.5
Atru.chr1.330 Acer truncatum HOM05D000419 ORTHO05D001071 6.3e-19 97.8 131 49.6
Lsat_1_v5_gn_8_6380 Lactuca sativa HOM05D000419 ORTHO05D001071 1.1e-18 97.1 113 54.9
Nn7g36723 Nelumbo nucifera HOM05D000419 ORTHO05D001071 1.4e-18 96.7 116 55.2
Eucgr.A02688 Eucalyptus grandis HOM05D000419 ORTHO05D001071 1.8e-18 96.3 102 57.8
Nitab4.5_0000472g0320 Nicotiana tabacum HOM05D000419 ORTHO05D001071 2.4e-18 95.9 89 66.3
HanXRQChr13g0392401 Helianthus annuus HOM05D000419 ORTHO05D001071 3.1e-18 95.5 103 57.3
MBI07_g11736_MAGBIO Magnolia biondii HOM05D000419 ORTHO05D001071 3.1e-18 95.5 109 54.1
PSO384G3875 Papaver somniferum HOM05D000419 ORTHO05D001071 3.1e-18 95.5 93 61.3
TAR375G0448 Trochodendron aralioides HOM05D000419 ORTHO05D001071 3.1e-18 95.5 122 54.1
TAR374G0872 Trochodendron aralioides HOM05D000419 ORTHO05D001071 4.1e-18 95.1 114 51.8
THA.LOC104825118 Tarenaya hassleriana HOM05D000419 ORTHO05D001071 5.3e-18 94.7 82 61.0
Ciclev10004505m.g Citrus clementina HOM05D000419 ORTHO05D001071 1.2e-17 93.6 129 48.1
HPP92_005258 Vanilla planifolia HOM05D000419 ORTHO05D001071 1.6e-17 93.2 114 50.9
MSTRG.27072 Avicennia marina HOM05D000419 ORTHO05D001071 2.0e-17 92.8 120 51.7
Peaxi162Scf00057g00011 Petunia axillaris HOM05D000419 ORTHO05D001071 2.0e-17 92.8 104 58.7
Lj1P1008T33 Lonicera japonica HOM05D000419 ORTHO05D001071 3.5e-17 92.0 91 58.2
VMungo0720G0767 Vigna mungo HOM05D000419 ORTHO05D001071 3.5e-17 92.0 126 47.6
Zm00001eb372940 Zea mays HOM05D000419 ORTHO05D001071 4.5e-17 91.7 121 53.7
Phvul.007G075700 Phaseolus vulgaris HOM05D000419 ORTHO05D001071 5.9e-17 91.3 103 54.4
Duzib205G0134 Durio zibethinus HOM05D000419 ORTHO05D001071 1.3e-16 90.1 71 67.6
Nitab4.5_0006023g0010 Nicotiana tabacum HOM05D000419 ORTHO05D001071 1.7e-16 89.7 84 65.5
Thhalv10013050m.g Eutrema salsugineum HOM05D000419 ORTHO05D001071 6.5e-16 87.8 92 55.4
BcaB05g21987 Brassica carinata HOM05D000419 ORTHO05D001071 1.1e-15 87.0 117 47.0
CARHR265800 Cardamine hirsuta HOM05D000419 ORTHO05D001071 1.5e-15 86.7 92 54.3
BcaC03g14493 Brassica carinata HOM05D000419 ORTHO05D001071 1.9e-15 86.3 88 55.7
A02p11570 Brassica napus HOM05D000419 ORTHO05D001071 1.9e-15 86.3 88 55.7
C02p19290 Brassica napus HOM05D000419 ORTHO05D001071 1.9e-15 86.3 88 55.7
BolC2t08065H Brassica oleracea HOM05D000419 ORTHO05D001071 1.9e-15 86.3 88 55.7
BraA02t06219Z Brassica rapa HOM05D000419 ORTHO05D001071 1.9e-15 86.3 88 55.7
Carub.0008s1302 Capsella rubella HOM05D000419 ORTHO05D001071 1.9e-15 86.3 92 56.5
AL8G27310 Arabidopsis lyrata HOM05D000419 ORTHO05D001071 3.2e-15 85.5 88 59.1
Carub.0007s1521 Capsella rubella HOM05D000419 ORTHO05D001071 5.5e-15 84.7 80 60.0
AT5G52860 Arabidopsis thaliana HOM05D000419 ORTHO05D001071 1.2e-14 83.6 88 55.7
vmacro06603 Vaccinium macrocarpon HOM05D000419 ORTHO05D001071 1.2e-14 83.6 94 56.4
Sp6g15020 Schrenkiella parvula HOM05D000419 ORTHO05D001071 1.4e-13 80.1 84 56.0
CARHR233200 Cardamine hirsuta HOM05D000419 ORTHO05D001071 1.8e-13 79.7 79 58.2
AT4G25750 Arabidopsis thaliana HOM05D000419 ORTHO05D001071 5.2e-13 78.2 80 55.0
BcaNung04117 Brassica carinata HOM05D000419 ORTHO05D001071 5.2e-13 78.2 79 60.8
AL7G27290 Arabidopsis lyrata HOM05D000419 ORTHO05D001071 6.8e-13 77.8 80 56.2
BcaC09g50749 Brassica carinata HOM05D000419 ORTHO05D001071 6.8e-13 77.8 79 58.2
A01p16990 Brassica napus HOM05D000419 ORTHO05D001071 1.2e-12 77.0 79 58.2
C01p21310 Brassica napus HOM05D000419 ORTHO05D001071 1.2e-12 77.0 79 58.2
BraA01t01655Z Brassica rapa HOM05D000419 ORTHO05D001071 1.2e-12 77.0 79 58.2
Thhalv10026876m.g Eutrema salsugineum HOM05D000419 ORTHO05D001071 4.4e-12 75.1 82 54.9
Aa31LG3G9100 Aethionema arabicum HOM05D000419 ORTHO05D001071 9.8e-12 73.9 142 38.7
BolC1t02054H Brassica oleracea HOM05D000419 ORTHO05D001071 9.8e-12 73.9 79 57.0
Sp7g23780 Schrenkiella parvula HOM05D000419 ORTHO05D001071 9.8e-12 73.9 76 57.9
ATR1131G055 Amborella trichopoda HOM05D000419 ORTHO05D001071 3.7e-11 72.0 107 46.7
Sc25g0000740 Simmondsia chinensis HOM05D000419 ORTHO05D001071 8.3e-11 70.9 89 49.4
Psat5g187400 Pisum sativum HOM05D000419 ORTHO05D001071 6.5e-08 61.2 78 47.4
SEGI_03560 Sequoiadendron giganteum HOM05D000419 ORTHO05D001071 6.5e-08 61.2 83 44.6
SalBow1G5849 Salvia bowleyana HOM05D000419 ORTHO05D001071 8.5e-08 60.8 38 78.9
CDE09G0509 Ceratophyllum demersum HOM05D000419 ORTHO05D001071 1.1e-07 60.5 128 38.3
Lj2P746T20 Lonicera japonica HOM05D000419 ORTHO05D001071 1.5e-07 60.1 73 53.4
MD03G1240800 Malus domestica HOM05D000419 ORTHO05D001071 2.5e-07 59.3 52 59.6
MD15G1134300 Malus domestica HOM05D000419 ORTHO05D001071 2.5e-07 59.3 54 57.4
MSTRG.23464 Avicennia marina HOM05D000419 ORTHO05D001071 5.5e-07 58.2 41 68.3
VMungo0251G0944 Vigna mungo HOM05D000419 ORTHO05D001071 5.5e-07 58.2 42 66.7
Medtr3g096410 Medicago truncatula HOM05D000419 ORTHO05D001071 7.2e-07 57.8 42 66.7
Psat5g061320 Pisum sativum HOM05D000419 ORTHO05D001071 7.2e-07 57.8 42 66.7
PGSC0003DMG400024466 Solanum tuberosum HOM05D000419 ORTHO05D001071 7.2e-07 57.8 88 47.7
TAR381G0101 Trochodendron aralioides HOM05D000419 ORTHO05D001071 9.4e-07 57.4 41 65.9
Zm00001eb434550 Zea mays HOM05D000419 ORTHO05D001071 9.4e-07 57.4 48 62.5
ATR0745G015 Amborella trichopoda HOM05D000419 ORTHO05D001071 1.2e-06 57.0 82 43.9
CDE02G2802 Ceratophyllum demersum HOM05D000419 ORTHO05D001071 1.2e-06 57.0 43 67.4
CDE06G2763 Ceratophyllum demersum HOM05D000419 ORTHO05D001071 1.2e-06 57.0 53 60.4
CDE08G0436 Ceratophyllum demersum HOM05D000419 ORTHO05D001071 1.2e-06 57.0 43 67.4
Ca_17630_v3 Cicer arietinum L. HOM05D000419 ORTHO05D001071 1.2e-06 57.0 42 66.7
CsaV3_2G019440 Cucumis sativus L. HOM05D000419 ORTHO05D001071 1.2e-06 57.0 71 47.9
Oeu058293.1 Olea europaea HOM05D000419 ORTHO05D001071 1.2e-06 57.0 46 58.7
Prupe.4G266200 Prunus persica HOM05D000419 ORTHO05D001071 1.2e-06 57.0 74 50.0
QL10p043103 Quercus lobata HOM05D000419 ORTHO05D001071 1.2e-06 57.0 49 57.1
Atru.chr4.867 Acer truncatum HOM05D000419 ORTHO05D001071 1.6e-06 56.6 42 66.7
Cpa.g.sc3.5 Carica papaya HOM05D000419 ORTHO05D001071 1.6e-06 56.6 74 47.3
Glyma.05G192700 Glycine max HOM05D000419 ORTHO05D001071 1.6e-06 56.6 42 64.3
Glyma.08G000800 Glycine max HOM05D000419 ORTHO05D001071 1.6e-06 56.6 42 64.3
QL08p041426 Quercus lobata HOM05D000419 ORTHO05D001071 1.6e-06 56.6 44 59.1
SEGI_36713 Sequoiadendron giganteum HOM05D000419 ORTHO05D001071 1.6e-06 56.6 82 46.3
TPR.G24391 Trifolium pratense HOM05D000419 ORTHO05D001071 1.6e-06 56.6 78 47.4
Cpa.g.sc42.170 Carica papaya HOM05D000419 ORTHO05D001071 2.1e-06 56.2 42 61.9
Lj4g0009753 Lotus japonicus HOM05D000419 ORTHO05D001071 2.1e-06 56.2 42 64.3
Sed0010593 Sechium edule HOM05D000419 ORTHO05D001071 2.1e-06 56.2 86 43.0
DCAR_014330 Daucus carota HOM05D000419 ORTHO05D001071 2.7e-06 55.8 46 58.7
Glyma.20G040400 Glycine max HOM05D000419 ORTHO05D001071 2.7e-06 55.8 76 47.4
PGR031G0174 Punica granatum HOM05D000419 ORTHO05D001071 2.7e-06 55.8 56 50.0
QL01p017183 Quercus lobata HOM05D000419 ORTHO05D001071 2.7e-06 55.8 121 35.5
Sabra07G0085800 Salix brachista HOM05D000419 ORTHO05D001071 2.7e-06 55.8 42 64.3
TPR.G37409 Trifolium pratense HOM05D000419 ORTHO05D001071 2.7e-06 55.8 42 64.3
GSVIVG01022346001 Vitis vinifera HOM05D000419 ORTHO05D001071 2.7e-06 55.8 79 46.8
Actinidia08594 Actinidia chinensis HOM05D000419 ORTHO05D001071 3.6e-06 55.5 118 39.0
MSTRG.19059 Avicennia marina HOM05D000419 ORTHO05D001071 3.6e-06 55.5 72 45.8
FAN11G1730 Fragaria x ananassa HOM05D000419 ORTHO05D001071 3.6e-06 55.5 41 63.4
Glyma.06G154500 Glycine max HOM05D000419 ORTHO05D001071 3.6e-06 55.5 42 61.9
Peaxi162Scf00006g00511 Petunia axillaris HOM05D000419 ORTHO05D001071 3.6e-06 55.5 48 58.3
QL08p041434 Quercus lobata HOM05D000419 ORTHO05D001071 3.6e-06 55.5 46 56.5
SGA_v2.0_scaffold20G09029 Striga asiatica HOM05D000419 ORTHO05D001071 3.6e-06 55.5 51 56.9
Aqoxy2G00380 Aquilegia oxysepala HOM05D000419 ORTHO05D001071 4.7e-06 55.1 42 64.3
Migut.H00691 Erythranthe guttata HOM05D000419 ORTHO05D001071 4.7e-06 55.1 75 48.0
Gohir.A05G383300 Gossypium hirsutum HOM05D000419 ORTHO05D001071 4.7e-06 55.1 50 56.0
Gohir.D04G032000 Gossypium hirsutum HOM05D000419 ORTHO05D001071 4.7e-06 55.1 50 56.0
Gorai.012G036300 Gossypium raimondii HOM05D000419 ORTHO05D001071 4.7e-06 55.1 50 56.0
MD11G1260200 Malus domestica HOM05D000419 ORTHO05D001071 4.7e-06 55.1 41 61.0
Nn5g28507 Nelumbo nucifera HOM05D000419 ORTHO05D001071 4.7e-06 55.1 43 62.8
Prupe.4G168100 Prunus persica HOM05D000419 ORTHO05D001071 4.7e-06 55.1 41 63.4
Prupe.4G272400 Prunus persica HOM05D000419 ORTHO05D001071 4.7e-06 55.1 41 65.9
Thecc.01G134500 Theobroma cacao HOM05D000419 ORTHO05D001071 4.7e-06 55.1 46 58.7
TPR.G28226 Trifolium pratense HOM05D000419 ORTHO05D001071 4.7e-06 55.1 91 44.0
ATR0776G075 Amborella trichopoda HOM05D000419 ORTHO05D001071 6.1e-06 54.7 39 66.7
Aqoxy6G00272 Aquilegia oxysepala HOM05D000419 ORTHO05D001071 6.1e-06 54.7 78 47.4
Cfa002910 Carpinus fangiana HOM05D000419 ORTHO05D001071 6.1e-06 54.7 41 65.9
COL.COLO4_35766 Corchorus olitorius HOM05D000419 ORTHO05D001071 6.1e-06 54.7 57 50.9
FvH4_3g18590 Fragaria vesca HOM05D000419 ORTHO05D001071 6.1e-06 54.7 41 61.0
Lalb_Chr20g0109361 Lupinus albus HOM05D000419 ORTHO05D001071 6.1e-06 54.7 39 66.7
Psat7g045120 Pisum sativum HOM05D000419 ORTHO05D001071 6.1e-06 54.7 42 61.9
Sabra05G0053600 Salix brachista HOM05D000419 ORTHO05D001071 6.1e-06 54.7 46 58.7
arahy.Tifrunner.gnm1.ann1.V6Y89Z Arachis hypogaea HOM05D000419 ORTHO05D001071 8.0e-06 54.3 42 61.9
Ca_16954_v3 Cicer arietinum L. HOM05D000419 ORTHO05D001071 8.0e-06 54.3 39 66.7
Cc07_g18780 Coffea canephora HOM05D000419 ORTHO05D001071 8.0e-06 54.3 43 62.8
Duzib264G0175 Durio zibethinus HOM05D000419 ORTHO05D001071 8.0e-06 54.3 41 63.4
Glyma.04G211800 Glycine max HOM05D000419 ORTHO05D001071 8.0e-06 54.3 42 61.9
HanXRQChr01g0023941 Helianthus annuus HOM05D000419 ORTHO05D001071 8.0e-06 54.3 81 44.4
Lj6g0007367 Lotus japonicus HOM05D000419 ORTHO05D001071 8.0e-06 54.3 72 47.2
Mapoly0015s0086 Marchantia polymorpha HOM05D000419 ORTHO05D001071 8.0e-06 54.3 105 37.1
PGSC0003DMG400020447 Solanum tuberosum HOM05D000419 ORTHO05D001071 8.0e-06 54.3 81 42.0
HPP92_025182 Vanilla planifolia HOM05D000419 ORTHO05D001071 8.0e-06 54.3 47 61.7


User provided reference genes

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