Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 7.4e-97 357.5 215 100.0
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 3.5e-86 322.0 215 91.2
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 1.8e-82 309.7 215 87.0
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.6e-75 286.6 216 83.3
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 4.0e-74 282.0 216 82.9
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 1.5e-73 280.0 216 81.9
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.5e-73 280.0 216 81.9
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 7.5e-73 277.7 216 81.5
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 7.0e-71 271.2 216 81.0
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 1.8e-66 256.5 204 81.9
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 8.3e-64 247.7 213 77.0
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 1.2e-62 243.8 212 76.4
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 1.6e-62 243.4 216 75.9
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 4.5e-62 241.9 213 75.1
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 2.9e-61 239.2 213 74.6
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.0e-57 226.5 216 71.8
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 7.0e-55 218.0 213 58.7
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 3.5e-54 215.7 214 61.2
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 3.5e-54 215.7 214 61.2
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.0e-53 214.2 213 54.5
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 2.3e-53 213.0 213 60.1
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 3.0e-53 212.6 215 59.5
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 6.6e-53 211.5 213 60.6
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 3.3e-52 209.1 210 59.5
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 7.3e-52 208.0 214 59.3
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 2.8e-51 206.1 146 71.2
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 4.7e-51 205.3 215 67.4
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 6.2e-51 204.9 148 68.9
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 1.4e-50 203.8 212 59.4
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 6.8e-50 201.4 213 56.8
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 4.4e-49 198.7 213 58.7
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 5.8e-49 198.4 212 65.1
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 9.8e-49 197.6 213 54.9
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 1.3e-48 197.2 213 57.7
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 4.9e-48 195.3 200 59.0
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 1.6e-46 190.3 213 54.9
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.7e-45 186.8 215 54.0
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 5.0e-45 185.3 210 57.1
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 6.6e-45 184.9 212 56.6
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 2.5e-44 183.0 210 55.2
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.3e-44 182.2 214 56.5
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 4.3e-44 182.2 214 56.1
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 1.1e-42 177.6 214 51.4
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 1.4e-42 177.2 213 54.5
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 2.3e-42 176.4 210 51.0
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 2.3e-42 176.4 210 51.0
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 4.0e-42 175.6 214 50.5
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 6.8e-42 174.9 207 61.4
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 6.8e-42 174.9 207 60.9
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 8.9e-42 174.5 213 64.8
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 4.4e-41 172.2 207 61.8
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 5.8e-41 171.8 210 50.5
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 5.8e-41 171.8 210 50.5
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 5.8e-41 171.8 213 52.1
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 1.7e-40 170.2 213 63.8
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.9e-40 169.5 214 53.7
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.9e-40 169.5 214 53.7
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 4.9e-40 168.7 210 54.8
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.4e-40 168.3 209 54.1
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 8.3e-40 167.9 207 49.3
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 1.4e-39 167.2 205 62.4
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 5.4e-39 165.2 207 62.8
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.6e-38 163.7 212 57.1
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.1e-38 163.3 214 52.3
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 3.5e-38 162.5 199 54.3
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 6.0e-38 161.8 210 52.4
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 1.0e-37 161.0 202 47.0
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 1.3e-37 160.6 210 52.4
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 3.9e-37 159.1 213 52.6
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.1e-36 157.5 209 57.9
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 1.1e-36 157.5 214 51.9
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 1.1e-36 157.5 212 53.3
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 1.1e-36 157.5 199 53.8
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 1.5e-36 157.1 208 53.4
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 7.3e-36 154.8 215 50.2
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 7.3e-36 154.8 210 49.0
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.2e-35 154.1 215 50.7
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.6e-35 153.7 201 53.7
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 4.7e-35 152.1 207 61.8
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 4.7e-35 152.1 212 48.6
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.2e-35 151.8 201 53.2
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 8.1e-35 151.4 212 48.6
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.1e-34 151.0 215 52.1
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.4e-34 150.6 215 52.1
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 2.3e-34 149.8 207 60.9
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 3.1e-34 149.4 207 60.9
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 5.2e-34 148.7 201 53.2
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 5.2e-34 148.7 215 51.6
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 5.2e-34 148.7 196 46.4
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 4.4e-33 145.6 215 48.8
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 5.8e-33 145.2 210 45.7
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 7.6e-33 144.8 201 50.7
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 9.9e-33 144.4 212 48.6
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 2.2e-32 143.3 210 48.6
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 4.9e-32 142.1 209 56.9
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 1.9e-31 140.2 202 50.5
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 3.2e-31 139.4 208 50.5
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 7.1e-31 138.3 192 44.8
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 6.0e-30 135.2 192 49.5
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 6.0e-30 135.2 192 43.8
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 6.0e-30 135.2 207 54.6
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 6.0e-30 135.2 148 50.7
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 1.3e-29 134.0 210 39.5
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 1.3e-29 134.0 207 58.0
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 5.1e-29 132.1 206 59.7
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 6.6e-29 131.7 207 53.6
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 8.6e-29 131.3 150 50.7
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 1.9e-28 130.2 210 47.6
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 2.5e-28 129.8 202 45.5
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 2.5e-28 129.8 207 57.0
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 4.3e-28 129.0 129 48.8
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 4.7e-27 125.6 216 44.0
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 6.2e-27 125.2 215 55.8
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 1.4e-26 124.0 211 45.5
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 1.8e-26 123.6 207 56.5
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 2.4e-26 123.2 207 53.6
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 5.2e-26 122.1 213 39.9
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 8.9e-26 121.3 208 54.8
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 1.2e-25 120.9 207 51.2
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 4.4e-25 119.0 214 40.7
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 7.6e-25 118.2 201 43.3
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 7.6e-25 118.2 214 40.2
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 7.6e-25 118.2 213 40.8
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 9.9e-25 117.9 199 40.2
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 9.9e-25 117.9 267 34.8
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 2.2e-24 116.7 214 40.2
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 1.9e-23 113.6 213 38.5
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 5.4e-23 112.1 205 53.7
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 5.4e-23 112.1 214 40.7
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 1.6e-22 110.5 199 47.2
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 3.5e-22 109.4 214 39.7
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 6.0e-22 108.6 199 39.7
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 7.8e-22 108.2 228 40.4
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.0e-21 107.8 191 42.4
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 1.0e-21 107.8 212 44.3
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 1.3e-21 107.5 199 39.2
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 3.0e-21 106.3 202 41.1
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 8.7e-21 104.8 212 40.1
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 8.7e-21 104.8 199 39.2
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 1.1e-20 104.4 215 39.5
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 1.5e-20 104.0 210 42.4
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 1.3e-19 100.9 197 40.1
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 3.6e-19 99.4 204 41.2
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 1.1e-18 97.8 198 37.4
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 1.1e-18 97.8 208 44.2
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 1.1e-18 97.8 198 41.9
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 1.8e-18 97.1 142 52.1
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 9.0e-18 94.7 197 39.6
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 1.2e-17 94.4 207 44.0
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.5e-17 94.0 214 37.4
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 3.4e-17 92.8 216 35.6
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 3.4e-17 92.8 200 43.0
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 3.4e-17 92.8 207 35.7
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 3.4e-17 92.8 163 55.8
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 5.8e-17 92.0 200 36.0
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 5.8e-17 92.0 219 41.1
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 1.3e-16 90.9 206 50.0
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 1.7e-16 90.5 200 38.0
Nn1g08525 Nelumbo nucifera HOM05D002831 ORTHO05D004341 2.2e-16 90.1 106 48.1
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 2.9e-16 89.7 209 52.2
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 3.8e-16 89.4 132 65.2
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 4.9e-16 89.0 214 37.4
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 1.4e-15 87.4 218 35.3
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 1.2e-14 84.3 121 40.5
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 6.0e-14 82.0 194 39.7
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 1.3e-13 80.9 238 37.4
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 3.0e-13 79.7 220 44.1
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 3.0e-13 79.7 223 48.4
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.5e-12 77.4 200 36.5
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.9e-12 77.0 201 36.3
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 3.3e-12 76.3 195 31.3
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 2.8e-11 73.2 211 30.8
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 8.1e-11 71.6 214 49.5
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.4e-10 70.9 196 35.7
Os06g0106900 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 1.8e-10 70.5 106 72.6
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 4.0e-10 69.3 105 50.5
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 4.5e-09 65.9 115 40.0
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 2.2e-08 63.5 105 41.0
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 2.2e-08 63.5 105 41.0
ECA238G2131 Erigeron canadensis HOM05D002831 ORTHO05D004341 4.9e-08 62.4 212 47.2
VMungo0251G0932 Vigna mungo HOM05D002831 ORTHO05D004341 6.4e-08 62.0 118 34.7


User provided reference genes

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