Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1277900 Malus domestica HOM05D006627 ORTHO05D007753 0.0e+00 2373.6 1214 100.0
MD01G1207000 Malus domestica HOM05D006627 ORTHO05D007753 0.0e+00 1913.7 1324 78.4
Prupe.2G299600 Prunus persica HOM05D006627 ORTHO05D007753 0.0e+00 1672.5 1254 72.9
RcHm_v2.0_Chr1g0378101 Rosa chinensis HOM05D006627 ORTHO05D007753 0.0e+00 1187.6 1239 58.4
FAN03G3330 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 1159.4 1243 58.0
FAN03G1328 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 1157.1 1237 57.8
FAN06G3118 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 1136.3 1232 57.6
FvH4_7g30110 Fragaria vesca HOM05D006627 ORTHO05D007753 0.0e+00 1135.6 1232 57.6
FAN10G1026 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 1128.6 1231 57.6
FAN10G1355 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 1126.3 1231 57.5
FAN06G3804 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 1122.1 1232 57.4
FAN01G2627 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 1113.6 1208 58.3
Haze_00034 Corylus avellana HOM05D006627 ORTHO05D007753 7.8e-151 539.3 1264 36.6
GSVIVG01028875001 Vitis vinifera HOM05D006627 ORTHO05D007753 1.5e-146 525.0 1254 35.8
Thecc.03G182600 Theobroma cacao HOM05D006627 ORTHO05D007753 1.7e-142 511.5 1311 35.6
TWI23G0587 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 1.2e-140 505.4 1231 35.6
Duzib205G1471 Durio zibethinus HOM05D006627 ORTHO05D007753 5.2e-139 500.0 1269 35.9
TWI14G0178 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 3.6e-132 477.2 1216 34.5
Duzib084G0535 Durio zibethinus HOM05D006627 ORTHO05D007753 2.6e-130 471.1 1284 34.1
Dinv28394 Davidia involucrata HOM05D006627 ORTHO05D007753 3.1e-123 447.6 1290 34.2
COL.COLO4_28015 Corchorus olitorius HOM05D006627 ORTHO05D007753 1.5e-122 445.3 1232 33.4
Ciclev10004200m.g Citrus clementina HOM05D006627 ORTHO05D007753 4.9e-121 440.3 1254 33.1
Atru.chr1.386 Acer truncatum HOM05D006627 ORTHO05D007753 3.1e-115 421.0 1260 31.1
Atru.chr1.369 Acer truncatum HOM05D006627 ORTHO05D007753 2.2e-113 414.8 1256 31.4
Atru.ctg97_1.2 Acer truncatum HOM05D006627 ORTHO05D007753 2.2e-113 414.8 1256 31.4
Potri.004G079000 Populus trichocarpa HOM05D006627 ORTHO05D007753 2.2e-113 414.8 1328 31.6
Gorai.011G285600 Gossypium raimondii HOM05D006627 ORTHO05D007753 3.5e-111 407.5 1234 33.6
Gohir.A10G234800 Gossypium hirsutum HOM05D006627 ORTHO05D007753 7.9e-111 406.4 1234 33.8
Gohir.D10G247200 Gossypium hirsutum HOM05D006627 ORTHO05D007753 5.1e-110 403.7 1234 33.5
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 6.4e-105 386.7 1420 30.3
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.4e-104 385.6 1453 29.9
Sabra04G0052500 Salix brachista HOM05D006627 ORTHO05D007753 1.3e-102 379.0 1289 31.1
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 2.3e-102 378.3 1429 30.4
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 2.0e-98 365.2 1423 29.7
Lj1C1004T5 Lonicera japonica HOM05D006627 ORTHO05D007753 1.2e-95 355.9 1331 29.5
Potri.017G142600 Populus trichocarpa HOM05D006627 ORTHO05D007753 1.9e-93 348.6 1263 31.2
Cpa.g.sc107.97 Carica papaya HOM05D006627 ORTHO05D007753 2.5e-93 348.2 1192 30.1
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 3.3e-85 321.2 1271 31.2
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 2.9e-81 308.1 1316 28.8
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 9.7e-77 293.1 1357 29.0
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 1.7e-76 292.4 1208 29.4
DCAR_020266 Daucus carota HOM05D006627 ORTHO05D007753 7.0e-75 287.0 1283 28.8
Actinidia03134 Actinidia chinensis HOM05D006627 ORTHO05D007753 4.2e-72 277.7 1233 29.5
vmacro06637 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 2.1e-71 275.4 1235 29.0
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 7.4e-69 266.9 1318 28.4
Oeu060456.3 Olea europaea HOM05D006627 ORTHO05D007753 1.1e-67 263.1 1284 28.4
CSS0035854 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 4.1e-67 261.2 1099 29.8
CSS0044230 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 4.1e-67 261.2 1099 29.8
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 1.9e-64 252.3 1324 28.1
vmacro06638 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 9.4e-64 250.0 1242 28.7
Rhsim07G0129200 Rhododendron simsii HOM05D006627 ORTHO05D007753 1.4e-62 246.1 1249 27.9
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 3.0e-62 245.0 1503 26.7
Rhsim03G0190100 Rhododendron simsii HOM05D006627 ORTHO05D007753 8.3e-60 236.9 1247 26.6
QL12p032277 Quercus lobata HOM05D006627 ORTHO05D007753 5.3e-59 234.2 1376 27.1
Peaxi162Scf00444g00008 Petunia axillaris HOM05D006627 ORTHO05D007753 1.0e-57 229.9 1262 26.6
Cc02_g02490 Coffea canephora HOM05D006627 ORTHO05D007753 2.2e-57 228.8 1305 26.9
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 3.2e-56 224.9 1295 26.9
Rhsim07G0129400 Rhododendron simsii HOM05D006627 ORTHO05D007753 4.7e-55 221.1 1262 26.9
SalBow4G0794 Salvia bowleyana HOM05D006627 ORTHO05D007753 3.0e-54 218.4 1249 27.5
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 4.0e-54 218.0 1350 27.9
Haze_08819 Corylus avellana HOM05D006627 ORTHO05D007753 6.8e-54 217.2 1372 26.4
Cfa012198 Carpinus fangiana HOM05D006627 ORTHO05D007753 5.0e-49 201.1 1406 27.0
Actinidia31835 Actinidia chinensis HOM05D006627 ORTHO05D007753 1.5e-48 199.5 1126 27.7
THA.LOC104800273 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 2.1e-47 195.7 1198 27.2
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 3.4e-45 188.3 1334 26.5
PGSC0003DMG400010123 Solanum tuberosum HOM05D006627 ORTHO05D007753 7.0e-43 180.6 1172 26.5
MSTRG.27091 Avicennia marina HOM05D006627 ORTHO05D007753 1.1e-40 173.3 1279 26.2
AUR62031403 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.5e-40 172.9 1405 25.9
Peaxi162Scf00618g00717 Petunia axillaris HOM05D006627 ORTHO05D007753 1.9e-40 172.6 1289 24.7
Ah.07g206700 Amaranthus hybridus HOM05D006627 ORTHO05D007753 1.2e-39 169.9 1451 25.4
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 6.1e-39 167.5 394 33.5
Aa31LG3G8880 Aethionema arabicum HOM05D008661 ORTHO05D010872 8.0e-39 167.2 585 31.3
AUR62027265 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.8e-38 166.0 1242 26.6
AUR62010719 Chenopodium quinoa HOM05D006627 ORTHO05D007753 3.4e-37 161.8 1249 26.2
DCAR_009389 Daucus carota HOM05D006627 ORTHO05D007753 4.4e-37 161.4 1273 24.9
Dinv35244 Davidia involucrata HOM05D006627 ORTHO05D007753 5.8e-37 161.0 228 46.5
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 6.4e-36 157.5 1219 25.2
CAN.G236.7 Capsicum annuum HOM05D006627 ORTHO05D007753 1.4e-35 156.4 1172 26.2
Hma1.2p1_0327F.1_g126380 Hydrangea macrophylla HOM05D006627 ORTHO05D007753 2.0e-34 152.5 588 31.0
Hund11448 Selenicereus undatus HOM05D006627 ORTHO05D007753 3.5e-34 151.8 1339 24.9
MSTRG.8718 Avicennia marina HOM05D006627 ORTHO05D007753 6.0e-34 151.0 1280 24.7
EL10Ac5g12809 Beta vulgaris HOM05D006627 ORTHO05D007753 1.3e-33 149.8 1217 25.0
Manes.02G019000 Manihot esculenta HOM05D006627 ORTHO05D007753 1.3e-33 149.8 1261 24.5
ECA233G6261 Erigeron canadensis HOM05D006627 ORTHO05D007753 5.0e-33 147.9 1281 25.6
EL10Ac3g05437 Beta vulgaris HOM05D006627 ORTHO05D007753 1.9e-32 146.0 1432 25.2
EL10Ac5g12810 Beta vulgaris HOM05D006627 ORTHO05D007753 1.8e-30 139.4 1291 26.3
AUR62027266 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.8e-30 139.4 1272 25.6
Ah.07g196520 Amaranthus hybridus HOM05D006627 ORTHO05D007753 2.0e-29 136.0 1222 25.8
HanXRQChr13g0394821 Helianthus annuus HOM05D006627 ORTHO05D007753 9.8e-29 133.7 1253 25.2
Sopen03g004000 Solanum pennellii HOM05D006627 ORTHO05D007753 6.4e-28 131.0 1161 25.9
THA.LOC104811963 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 2.4e-27 129.0 1141 23.4
Os08g0430000 Oryza sativa ssp. japonica HOM05D006627 ORTHO05D007753 4.1e-27 128.3 1379 24.1
Solyc03g025150.4 Solanum lycopersicum HOM05D006627 ORTHO05D007753 2.7e-26 125.6 1163 24.4
Thhalv10024596m.g Eutrema salsugineum HOM05D008661 ORTHO05D010872 1.7e-25 122.9 505 31.7
CARHR233080 Cardamine hirsuta HOM05D008661 ORTHO05D010872 7.5e-21 107.5 374 28.9
Sp7g23680 Schrenkiella parvula HOM05D008661 ORTHO05D010872 6.4e-20 104.4 1089 24.5
TWI60G0847 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 6.4e-20 104.4 1179 23.3
Dinv35243 Davidia involucrata HOM05D006627 ORTHO05D007753 1.9e-19 102.8 515 25.8
EL10Ac5g12811 Beta vulgaris HOM05D006627 ORTHO05D007753 2.4e-19 102.4 1103 23.9
Lsat_1_v5_gn_6_5180 Lactuca sativa HOM05D006627 ORTHO05D007753 4.1e-19 101.7 1274 25.4
Actinidia14583 Actinidia chinensis HOM05D006627 ORTHO05D007753 9.2e-19 100.5 350 32.6
Carub.0238s0001 Capsella rubella HOM05D008661 ORTHO05D010872 1.6e-18 99.8 405 27.4
AL8G26990 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 3.5e-18 98.6 1214 23.3
Lsat_1_v5_gn_9_57440 Lactuca sativa HOM05D006627 ORTHO05D007753 1.0e-17 97.1 364 29.4
AT5G52530 Arabidopsis thaliana HOM05D008661 ORTHO05D010872 3.0e-17 95.5 1121 24.3
Atru.chr9.2147 Acer truncatum HOM05D006627 ORTHO05D007753 3.9e-17 95.1 1021 24.4
AL7G27440 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 2.5e-16 92.4 353 27.8
CARHR233070 Cardamine hirsuta HOM05D008661 ORTHO05D010872 3.3e-16 92.0 1205 23.8
BcaC07g38204 Brassica carinata HOM05D008661 ORTHO05D010872 5.6e-16 91.3 344 27.9
BolC8t48627H Brassica oleracea HOM05D008661 ORTHO05D010872 5.6e-16 91.3 344 27.9
A08p21060 Brassica napus HOM05D008661 ORTHO05D010872 1.2e-15 90.1 344 26.7
C08p09590 Brassica napus HOM05D008661 ORTHO05D010872 1.2e-15 90.1 344 27.3
A08p21040 Brassica napus HOM05D008661 ORTHO05D010872 2.1e-15 89.4 342 27.5
BraA08t34056Z Brassica rapa HOM05D008661 ORTHO05D010872 2.1e-15 89.4 342 27.5
CDE07G1237 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 3.1e-14 85.5 714 24.6
Migut.F00307 Erythranthe guttata HOM05D006627 ORTHO05D007753 8.9e-14 84.0 1163 23.7
ECA232G3189 Erigeron canadensis HOM05D006627 ORTHO05D007753 2.6e-13 82.4 384 25.8
Atru.chr9.2148 Acer truncatum HOM05D006627 ORTHO05D007753 3.4e-13 82.0 182 36.8
Carub.0007s1533 Capsella rubella HOM05D008661 ORTHO05D010872 3.4e-13 82.0 404 27.2
Carub.0008s1265 Capsella rubella HOM05D008661 ORTHO05D010872 7.6e-13 80.9 402 25.6
CDE04G0350 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 1.3e-12 80.1 712 24.4
RcHm_v2.0_Chr5g0081641 Rosa chinensis HOM05D006627 ORTHO05D007753 1.7e-12 79.7 258 30.6
unitig_46.g18802 Utricularia gibba HOM05D006627 ORTHO05D007753 2.2e-12 79.3 1196 22.7
Lsat_1_v5_gn_2_131160 Lactuca sativa HOM05D029832 ORTHO05D007753 3.2e-11 75.5 417 25.4
HPP92_025630 Vanilla planifolia HOM05D006627 ORTHO05D007753 1.6e-10 73.2 732 24.7
BraA10t43090Z Brassica rapa HOM05D008661 ORTHO05D010872 2.1e-10 72.8 305 27.9
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 2.7e-10 72.4 354 26.8
BcaC04g20573 Brassica carinata HOM05D008661 ORTHO05D010872 4.6e-10 71.6 312 27.6
C09p42010 Brassica napus HOM05D008661 ORTHO05D010872 6.0e-10 71.2 312 27.6
BolC9t57083H Brassica oleracea HOM05D008661 ORTHO05D010872 6.0e-10 71.2 312 27.6
BcaB03g12481 Brassica carinata HOM05D008661 ORTHO05D010872 7.8e-10 70.9 1123 24.0
A10p10120 Brassica napus HOM05D008661 ORTHO05D010872 1.0e-09 70.5 312 27.9
BraA10t43092Z Brassica rapa HOM05D008661 ORTHO05D010872 8.7e-09 67.4 316 27.8
BcaB03g12479 Brassica carinata HOM05D008661 ORTHO05D010872 3.3e-08 65.5 379 27.2
HanXRQChr09g0252481 Helianthus annuus HOM05D029832 ORTHO05D007753 3.3e-08 65.5 503 26.4
Zm00001eb179470 Zea mays HOM05D006627 ORTHO05D007753 4.3e-08 65.1 1397 22.8
Cpa.g.sc107.94 Carica papaya HOM05D006627 ORTHO05D007753 9.6e-08 63.9 271 25.8
Sp6g14700 Schrenkiella parvula HOM05D008661 ORTHO05D010872 9.6e-08 63.9 1164 23.8
C09p42020 Brassica napus HOM05D008661 ORTHO05D010872 4.8e-07 61.6 333 26.4
BolC9t57085H Brassica oleracea HOM05D008661 ORTHO05D010872 4.8e-07 61.6 333 26.4
ECA233G3260 Erigeron canadensis HOM05D001089 ORTHO05D000920 2.4e-06 59.3 661 25.6
HanXRQChr14g0462471 Helianthus annuus HOM05D029832 ORTHO05D007753 3.1e-06 58.9 332 26.5
BcaC04g20569 Brassica carinata HOM05D008661 ORTHO05D010872 6.9e-06 57.8 248 27.8


User provided reference genes

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