Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 0.0e+00 1369.8 701 100.0
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 0.0e+00 1174.5 701 86.9
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 0.0e+00 1094.3 702 82.1
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 4.5e-276 954.5 703 73.7
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 9.7e-255 883.6 703 70.6
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 4.8e-254 881.3 701 70.6
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.8e-240 836.3 706 67.6
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 6.3e-238 827.8 701 67.3
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 6.3e-238 827.8 697 67.9
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.9e-234 816.2 701 67.0
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 1.1e-200 704.1 717 58.7
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 6.8e-200 701.4 708 59.2
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 1.7e-198 696.8 716 58.2
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 3.0e-195 686.0 713 58.3
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.9e-195 685.6 560 70.0
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 3.3e-194 682.6 706 58.5
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 2.8e-193 679.5 704 57.5
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 5.8e-191 671.8 714 55.2
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 1.2e-188 664.1 708 54.8
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.0e-187 661.0 709 56.3
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 2.3e-187 659.8 711 56.8
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 8.7e-187 657.9 713 55.8
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 7.3e-186 654.8 708 55.5
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 1.3e-185 654.1 712 55.6
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 1.6e-185 653.7 711 54.1
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 4.8e-185 652.1 698 56.4
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 6.9e-184 648.3 705 55.5
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 1.6e-180 637.1 692 55.1
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 2.1e-180 636.7 707 53.9
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 2.7e-180 636.3 707 53.7
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 1.7e-179 633.6 710 54.1
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 3.3e-178 629.4 697 54.7
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 5.6e-178 628.6 637 57.8
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 9.6e-178 627.9 700 54.0
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 9.0e-176 621.3 760 52.1
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 1.5e-175 620.5 711 53.3
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 5.8e-175 618.6 701 53.1
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 1.4e-173 614.0 710 53.2
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 7.9e-172 608.2 710 52.8
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 6.7e-171 605.1 690 53.3
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 1.3e-169 600.9 709 52.3
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.3e-169 600.9 716 52.9
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 8.1e-169 598.2 713 52.6
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.8e-168 597.0 690 53.0
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 4.0e-168 595.9 733 51.7
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 7.6e-167 591.7 705 52.1
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 1.0e-166 591.3 823 48.2
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 9.3e-165 584.7 713 51.9
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 2.1e-164 583.6 711 51.6
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.7e-164 583.2 721 52.6
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 3.5e-164 582.8 703 50.4
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 4.6e-164 582.4 708 51.6
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 5.1e-163 578.9 729 49.8
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 7.4e-162 575.1 725 50.2
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 2.8e-161 573.2 702 51.7
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.1e-160 571.2 643 54.9
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 6.9e-160 568.5 717 50.2
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 2.2e-158 563.5 704 51.3
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 6.5e-158 562.0 725 51.9
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 7.1e-157 558.5 723 50.1
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 1.0e-155 554.7 713 49.9
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 2.5e-154 550.1 712 50.7
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 4.3e-154 549.3 774 45.9
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 1.7e-150 537.3 702 48.6
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 5.0e-150 535.8 707 48.5
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 1.2e-148 531.2 618 53.9
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 2.7e-148 530.0 723 49.9
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 4.6e-148 529.3 707 47.0
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 2.3e-147 526.9 729 48.8
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 3.7e-145 519.6 647 52.4
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 3.4e-143 513.1 710 47.2
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 3.4e-143 513.1 706 47.9
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 1.4e-141 507.7 741 43.9
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 2.5e-141 506.9 730 46.6
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 2.5e-141 506.9 706 46.2
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 4.2e-141 506.1 717 46.4
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 4.2e-141 506.1 720 46.2
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 5.5e-141 505.8 790 43.7
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 3.9e-139 499.6 707 47.2
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 7.4e-138 495.4 759 45.7
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 7.0e-136 488.8 717 45.7
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 3.5e-135 486.5 522 55.9
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 5.5e-133 479.2 637 47.7
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 5.5e-133 479.2 702 45.4
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 2.7e-132 476.9 705 44.3
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 2.7e-132 476.9 709 43.9
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 7.4e-130 468.8 705 47.0
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 4.8e-129 466.1 701 44.2
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 1.4e-128 464.5 707 44.3
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 2.4e-128 463.8 721 42.7
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.2e-127 461.5 710 43.5
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 1.7e-126 457.6 644 48.0
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 1.1e-125 454.9 707 43.7
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 2.5e-125 453.8 708 43.8
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 1.2e-124 451.4 696 45.5
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 3.6e-124 449.9 655 46.3
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 4.0e-123 446.4 704 42.9
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 1.7e-121 441.0 707 43.7
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 2.8e-121 440.3 718 41.6
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 2.8e-121 440.3 735 42.0
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 3.5e-119 433.3 710 42.1
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.7e-118 431.0 711 42.5
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 1.9e-117 427.6 656 43.6
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 2.1e-116 424.1 569 47.1
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 1.5e-114 417.9 779 37.5
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 2.6e-114 417.2 759 39.9
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 1.1e-112 411.8 795 39.2
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 1.3e-110 404.8 697 41.5
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 2.8e-108 397.1 649 43.6
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 5.7e-106 389.4 641 42.6
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 7.5e-106 389.0 717 40.3
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 8.3e-105 385.6 639 42.4
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 1.4e-104 384.8 683 41.6
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 3.5e-103 380.2 634 42.1
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 1.1e-101 375.2 299 66.9
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 1.6e-100 371.3 683 40.4
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 8.0e-100 369.0 696 40.8
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 1.0e-99 368.6 583 43.7
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 5.2e-99 366.3 880 35.0
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 3.4e-98 363.6 695 38.6
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 4.9e-97 359.8 695 39.9
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 4.9e-97 359.8 709 39.2
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 8.3e-97 359.0 616 41.1
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 1.1e-96 358.6 706 39.5
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 5.4e-96 356.3 681 38.2
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 1.6e-95 354.8 691 39.9
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 4.6e-95 353.2 687 39.6
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 1.0e-94 352.1 704 36.9
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 1.2e-92 345.1 626 40.3
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 1.6e-92 344.7 685 38.5
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 1.6e-92 344.7 691 38.2
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.8e-92 344.0 343 59.5
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 2.3e-91 340.9 682 37.0
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 5.2e-91 339.7 688 38.1
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 2.6e-90 337.4 690 38.7
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 7.5e-90 335.9 705 37.0
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 1.9e-85 321.2 685 36.2
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 5.2e-83 313.2 299 59.5
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 1.5e-82 311.6 345 54.8
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 3.7e-81 307.0 873 32.1
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 2.7e-79 300.8 322 54.7
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 3.0e-78 297.4 693 36.5
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 5.6e-77 293.1 578 37.4
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 4.7e-76 290.0 587 38.3
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 1.4e-75 288.5 381 47.0
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 6.6e-70 269.6 280 53.6
CSS0005394 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 7.3e-69 266.2 434 43.3
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 2.6e-66 257.7 404 44.6
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 1.3e-65 255.4 461 39.7
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 1.1e-64 252.3 268 50.0
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 2.4e-64 251.1 619 36.2
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 7.9e-63 246.1 703 32.1
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 7.3e-61 239.6 505 40.2
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 1.2e-58 232.3 628 35.2
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 4.9e-49 200.3 142 74.6
Ca_13872_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 2.0e-42 178.3 457 36.1
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 8.4e-41 172.9 238 50.4
CSS0041965 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 1.4e-40 172.2 139 64.7
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 4.3e-37 160.6 207 45.9
MBI17_g24687_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 1.1e-35 156.0 472 34.1
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 2.9e-33 147.9 331 36.3
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 9.4e-32 142.9 127 59.8
MBI18_g29423_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 1.2e-31 142.5 485 34.0
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 6.1e-31 140.2 207 42.0
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 8.2e-28 129.8 120 64.2
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 3.4e-26 124.4 299 32.8
PGSC0003DMG400029919 Solanum tuberosum HOM05D003626 ORTHO05D004255 1.4e-24 119.0 454 30.8
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 1.2e-23 115.9 282 36.9
FAN06G0571 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.7e-23 114.8 92 67.4
TAR375G0736 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.8e-19 102.1 106 53.8
Rhsim05G0045800 Rhododendron simsii HOM05D003626 ORTHO05D004255 1.8e-14 85.5 349 30.1
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 4.4e-13 80.9 99 49.5
HPP92_028446 Vanilla planifolia HOM05D003626 ORTHO05D004255 2.4e-11 75.1 96 46.9
HPP92_001484 Vanilla planifolia HOM05D003626 ORTHO05D004255 4.5e-10 70.9 70 50.0
TAR375G0355 Trochodendron aralioides HOM05D003626 ORTHO05D004255 5.5e-08 63.9 63 60.3
HPP92_001477 Vanilla planifolia HOM05D003626 ORTHO05D004255 5.5e-08 63.9 56 55.4
ECA233G5443 Erigeron canadensis HOM05D003626 ORTHO05D004255 1.2e-07 62.8 67 53.7
TAR636G0984 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.2e-07 62.8 54 66.7
BraA01t01640Z Brassica rapa HOM05D002456 ORTHO05D002994 1.6e-07 62.4 211 34.6
SHI13766 Sapria himalayana HOM05D003626 ORTHO05D004255 2.7e-07 61.6 184 32.1


User provided reference genes

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