Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1256600 Malus domestica HOM05D007220 ORTHO05D009058 3.0e-53 211.5 99 100.0
MD01G1184500 Malus domestica HOM05D007220 ORTHO05D009058 2.6e-20 102.1 53 88.7
Sabra15G0142900 Salix brachista HOM05D007220 ORTHO05D009058 2.4e-18 95.5 64 71.9
TWI39G1186 Tripterygium wilfordii HOM05D007220 ORTHO05D009058 4.1e-18 94.7 53 81.1
Cpa.g.sc3.292 Carica papaya HOM05D007220 ORTHO05D009058 9.2e-18 93.6 53 79.2
Manes.14G034000 Manihot esculenta HOM05D007220 ORTHO05D009058 9.2e-18 93.6 53 79.2
Actinidia25024 Actinidia chinensis HOM05D007220 ORTHO05D009058 1.6e-17 92.8 53 79.2
THA.LOC104811513 Tarenaya hassleriana HOM05D007220 ORTHO05D009058 1.6e-17 92.8 53 77.4
Duzib205G1715 Durio zibethinus HOM05D007220 ORTHO05D009058 2.0e-17 92.4 53 79.2
FAN01G2832 Fragaria x ananassa HOM05D007220 ORTHO05D009058 2.0e-17 92.4 53 75.5
Potri.015G129600 Populus trichocarpa HOM05D007220 ORTHO05D009058 2.0e-17 92.4 53 79.2
ClCG05G007450 Citrullus lanatus HOM05D007220 ORTHO05D009058 2.7e-17 92.0 52 75.0
CsaV3_3G016270 Cucumis sativus L. HOM05D007220 ORTHO05D009058 2.7e-17 92.0 52 75.0
Dinv28549 Davidia involucrata HOM05D007220 ORTHO05D009058 2.7e-17 92.0 53 79.2
FvH4_7g27960 Fragaria vesca HOM05D007220 ORTHO05D009058 3.5e-17 91.7 53 75.5
FAN06G0674 Fragaria x ananassa HOM05D007220 ORTHO05D009058 3.5e-17 91.7 53 75.5
FAN06G4318 Fragaria x ananassa HOM05D007220 ORTHO05D009058 3.5e-17 91.7 53 75.5
FAN10G3220 Fragaria x ananassa HOM05D007220 ORTHO05D009058 3.5e-17 91.7 53 75.5
Gohir.D07G043100 Gossypium hirsutum HOM05D007220 ORTHO05D009058 4.6e-17 91.3 53 75.5
RcHm_v2.0_Chr1g0374911 Rosa chinensis HOM05D007220 ORTHO05D009058 4.6e-17 91.3 53 75.5
GSVIVG01018558001 Vitis vinifera HOM05D007220 ORTHO05D009058 4.6e-17 91.3 53 77.4
Dinv22967 Davidia involucrata HOM05D007220 ORTHO05D009058 7.8e-17 90.5 53 75.5
Gohir.A07G038900 Gossypium hirsutum HOM05D007220 ORTHO05D009058 7.8e-17 90.5 53 75.5
Gorai.001G046100 Gossypium raimondii HOM05D007220 ORTHO05D009058 7.8e-17 90.5 53 75.5
VMungo1127G0384 Vigna mungo HOM05D007220 ORTHO05D009058 7.8e-17 90.5 54 74.1
PGR042G1708 Punica granatum HOM05D007220 ORTHO05D009058 1.0e-16 90.1 53 73.6
vmacro09892 Vaccinium macrocarpon HOM05D007220 ORTHO05D009058 1.0e-16 90.1 53 75.5
QL09p019051 Quercus lobata HOM05D007220 ORTHO05D009058 1.3e-16 89.7 52 76.9
Eucgr.A02878 Eucalyptus grandis HOM05D007220 ORTHO05D009058 1.7e-16 89.4 53 73.6
Thecc.03G158900 Theobroma cacao HOM05D007220 ORTHO05D009058 1.7e-16 89.4 53 75.5
Haze_13838 Corylus avellana HOM05D007220 ORTHO05D009058 2.3e-16 89.0 53 73.6
FAN03G0488 Fragaria x ananassa HOM05D007220 ORTHO05D009058 2.3e-16 89.0 53 73.6
FAN03G2818 Fragaria x ananassa HOM05D007220 ORTHO05D009058 2.3e-16 89.0 53 73.6
CSS0026352 Camellia sinensis var. sinensis HOM05D007220 ORTHO05D009058 3.0e-16 88.6 53 75.5
MELO3C006826.2 Cucumis melo HOM05D007220 ORTHO05D009058 3.0e-16 88.6 52 71.2
Cfa008220 Carpinus fangiana HOM05D007220 ORTHO05D009058 5.0e-16 87.8 53 71.7
Aa31LG3G7960 Aethionema arabicum HOM05D007220 ORTHO05D009058 1.1e-15 86.7 53 73.6
Cc02_g04040 Coffea canephora HOM05D007220 ORTHO05D009058 1.1e-15 86.7 53 71.7
COL.COLO4_14153 Corchorus olitorius HOM05D007220 ORTHO05D009058 1.1e-15 86.7 51 74.5
Phvul.011G004500 Phaseolus vulgaris HOM05D007220 ORTHO05D009058 1.1e-15 86.7 54 72.2
arahy.Tifrunner.gnm1.ann1.0IXC5E Arachis hypogaea HOM05D007220 ORTHO05D009058 1.5e-15 86.3 53 73.6
AUR62016183 Chenopodium quinoa HOM05D007220 ORTHO05D009058 1.9e-15 85.9 53 73.6
EL10Ac3g05813 Beta vulgaris HOM05D007220 ORTHO05D009058 2.5e-15 85.5 64 64.1
CiPaw.04G061800 Carya illinoinensis HOM05D007220 ORTHO05D009058 2.5e-15 85.5 53 71.7
Glyma.09G232600 Glycine max HOM05D007220 ORTHO05D009058 3.3e-15 85.1 53 71.7
PSO478G4327 Papaver somniferum HOM05D007220 ORTHO05D009058 3.3e-15 85.1 49 77.6
Atru.chr1.664 Acer truncatum HOM05D007220 ORTHO05D009058 4.3e-15 84.7 64 65.6
Ciclev10005924m.g Citrus clementina HOM05D007220 ORTHO05D009058 4.3e-15 84.7 53 71.7
Nn4g26358 Nelumbo nucifera HOM05D007220 ORTHO05D009058 7.3e-15 84.0 49 73.5
Sc19g0001910 Simmondsia chinensis HOM05D007220 ORTHO05D009058 7.3e-15 84.0 53 67.9
unitig_46.g18768 Utricularia gibba HOM05D007220 ORTHO05D009058 7.3e-15 84.0 47 74.5
AL8G25850 Arabidopsis lyrata HOM05D007220 ORTHO05D009058 9.5e-15 83.6 53 66.0
AUR62035102 Chenopodium quinoa HOM05D007220 ORTHO05D009058 9.5e-15 83.6 50 76.0
Solyc03g083570.3 Solanum lycopersicum HOM05D007220 ORTHO05D009058 9.5e-15 83.6 53 69.8
Sopen03g023380 Solanum pennellii HOM05D007220 ORTHO05D009058 9.5e-15 83.6 53 69.8
Rhsim09G0192800 Rhododendron simsii HOM05D007220 ORTHO05D009058 1.2e-14 83.2 51 68.6
SGA_v2.0_scaffold2G01175 Striga asiatica HOM05D007220 ORTHO05D009058 1.2e-14 83.2 53 69.8
BcaB01g04168 Brassica carinata HOM05D007220 ORTHO05D009058 1.6e-14 82.8 53 69.8
BcaC01g06128 Brassica carinata HOM05D007220 ORTHO05D009058 1.6e-14 82.8 53 69.8
C03p18980 Brassica napus HOM05D007220 ORTHO05D009058 1.6e-14 82.8 53 69.8
BolC3t14287H Brassica oleracea HOM05D007220 ORTHO05D009058 1.6e-14 82.8 53 69.8
Nitab4.5_0000072g0560 Nicotiana tabacum HOM05D007220 ORTHO05D009058 1.6e-14 82.8 53 69.8
Nitab4.5_0001548g0050 Nicotiana tabacum HOM05D007220 ORTHO05D009058 1.6e-14 82.8 53 69.8
PSO782G3417 Papaver somniferum HOM05D007220 ORTHO05D009058 1.6e-14 82.8 49 75.5
SalBow4G2286 Salvia bowleyana HOM05D007220 ORTHO05D009058 1.6e-14 82.8 50 76.0
CAN.G152.17 Capsicum annuum HOM05D007220 ORTHO05D009058 2.1e-14 82.4 53 67.9
MSTRG.27183 Avicennia marina HOM05D007220 ORTHO05D009058 2.8e-14 82.0 53 69.8
Lj8A39T34 Lonicera japonica HOM05D007220 ORTHO05D009058 2.8e-14 82.0 53 69.8
Medtr4g035825 Medicago truncatula HOM05D007220 ORTHO05D009058 2.8e-14 82.0 53 67.9
Peaxi162Scf00241g00624 Petunia axillaris HOM05D007220 ORTHO05D009058 4.7e-14 81.3 53 67.9
SGA_v2.0_scaffold486G52391 Striga asiatica HOM05D007220 ORTHO05D009058 4.7e-14 81.3 46 78.3
A03p16110 Brassica napus HOM05D007220 ORTHO05D009058 6.2e-14 80.9 53 67.9
BraA03t10902Z Brassica rapa HOM05D007220 ORTHO05D009058 6.2e-14 80.9 53 67.9
Ca_30916_v3 Cicer arietinum L. HOM05D007220 ORTHO05D009058 6.2e-14 80.9 53 67.9
Psat7g150000 Pisum sativum HOM05D007220 ORTHO05D009058 6.2e-14 80.9 53 67.9
Sp6g13740 Schrenkiella parvula HOM05D007220 ORTHO05D009058 6.2e-14 80.9 53 66.0
HanXRQChr08g0223851 Helianthus annuus HOM05D007220 ORTHO05D009058 1.1e-13 80.1 47 74.5
Lsat_1_v5_gn_8_9340 Lactuca sativa HOM05D007220 ORTHO05D009058 1.1e-13 80.1 47 74.5
Lj3g0016008 Lotus japonicus HOM05D007220 ORTHO05D009058 1.4e-13 79.7 53 66.0
MBI12_g20320_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 1.8e-13 79.3 44 79.5
AT5G51545 Arabidopsis thaliana HOM05D007220 ORTHO05D009058 2.3e-13 79.0 53 64.2
Carub.0008s1158 Capsella rubella HOM05D007220 ORTHO05D009058 2.3e-13 79.0 53 64.2
ECA233G2338 Erigeron canadensis HOM05D007220 ORTHO05D009058 2.3e-13 79.0 47 74.5
Aqoxy7G00673 Aquilegia oxysepala HOM05D007220 ORTHO05D009058 4.0e-13 78.2 48 68.8
Zm00001eb230760 Zea mays HOM05D007220 ORTHO05D009058 4.0e-13 78.2 49 67.3
CARHR264320 Cardamine hirsuta HOM05D007220 ORTHO05D009058 6.8e-13 77.4 50 64.0
PGSC0003DMG400023001 Solanum tuberosum HOM05D007220 ORTHO05D009058 1.5e-12 76.3 47 70.2
Migut.F00451 Erythranthe guttata HOM05D007220 ORTHO05D009058 3.4e-12 75.1 41 78.0
CDE09G0763 Ceratophyllum demersum HOM05D007220 ORTHO05D009058 4.4e-12 74.7 49 65.3
TPR.G15117 Trifolium pratense HOM05D007220 ORTHO05D009058 4.4e-12 74.7 49 69.4
SEGI_29714 Sequoiadendron giganteum HOM05D007220 ORTHO05D009058 7.5e-12 73.9 43 72.1
Mapoly0002s0242 Marchantia polymorpha HOM05D007220 ORTHO05D009058 9.9e-12 73.6 51 56.9
HPP92_002073 Vanilla planifolia HOM05D007220 ORTHO05D009058 3.7e-11 71.6 43 67.4
ATR0730G016 Amborella trichopoda HOM05D007220 ORTHO05D009058 1.4e-10 69.7 44 68.2
Pp3c26_11240 Physcomitrium patens HOM05D007220 ORTHO05D009058 1.9e-10 69.3 55 60.0
AagrBONN_evm.TU.Sc2ySwM_228.5821 Anthoceros agrestis HOM05D007220 ORTHO05D009058 6.0e-09 64.3 42 59.5


User provided reference genes

Program Settings