Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1246000 Malus domestica HOM05D000005 ORTHO05D001748 1.1e-43 180.3 151 100.0
MD07G1243000 Malus domestica HOM05D000005 ORTHO05D000012 5.5e-30 134.8 151 87.4
MD07G1242100 Malus domestica HOM05D000005 ORTHO05D000012 1.5e-24 116.7 150 81.3
MD07G1243500 Malus domestica HOM05D000005 ORTHO05D000012 2.6e-24 115.9 143 84.6
MD07G1245600 Malus domestica HOM05D000005 ORTHO05D000012 8.8e-20 100.9 146 63.7
MD07G1244600 Malus domestica HOM05D000005 ORTHO05D000012 1.5e-19 100.1 136 83.1
MD07G1242500 Malus domestica HOM05D000005 ORTHO05D000012 5.7e-19 98.2 140 76.4
MD08G1230100 Malus domestica HOM05D003506 ORTHO05D000012 3.5e-16 89.0 137 43.1
MD07G1245100 Malus domestica HOM05D000005 ORTHO05D001748 4.5e-16 88.6 62 72.6
MD07G1261100 Malus domestica HOM05D000005 ORTHO05D000012 4.5e-16 88.6 137 43.8
MD08G1229600 Malus domestica HOM05D003506 ORTHO05D004063 3.8e-15 85.5 148 56.1
MD07G1244000 Malus domestica HOM05D000005 ORTHO05D000012 6.5e-15 84.7 126 83.3
MD07G1260700 Malus domestica HOM05D003506 ORTHO05D000012 1.2e-13 80.5 62 71.0
FAN10G3445 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.0e-12 75.9 139 38.1
Gohir.D11G295500 Gossypium hirsutum HOM05D000005 ORTHO05D000012 5.2e-12 75.1 146 56.8
Gorai.007G319000 Gossypium raimondii HOM05D000005 ORTHO05D000012 5.2e-12 75.1 146 54.1
Gohir.D11G296000 Gossypium hirsutum HOM05D000005 ORTHO05D000012 6.7e-12 74.7 146 50.0
MD01G1190700 Malus domestica HOM05D000005 ORTHO05D015660 6.7e-12 74.7 143 56.6
FAN10G0683 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.3e-11 72.4 146 43.8
Gohir.A11G283852 Gossypium hirsutum HOM05D000005 ORTHO05D000012 5.7e-11 71.6 146 33.6
MD03G1202400 Malus domestica HOM05D000005 ORTHO05D001748 2.2e-10 69.7 138 73.2
FvH4_7g28540 Fragaria vesca HOM05D000005 ORTHO05D000012 8.2e-10 67.8 62 61.3
MD01G1189200 Malus domestica HOM05D000005 ORTHO05D000012 1.1e-09 67.4 62 59.7
GSVIVG01034812001 Vitis vinifera HOM05D000005 ORTHO05D011281 1.1e-09 67.4 61 55.7
FAN20G0629 Fragaria x ananassa HOM05D000005 ORTHO05D035308 1.4e-09 67.0 62 62.9
Gohir.D11G295266 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.4e-09 67.0 62 56.5
FAN03G3405 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.8e-09 66.6 62 59.7
Gohir.D11G295925 Gossypium hirsutum HOM05D000005 ORTHO05D000012 2.4e-09 66.2 51 64.7
Gorai.007G318700 Gossypium raimondii HOM05D000005 ORTHO05D000012 3.1e-09 65.9 134 58.2
RcHm_v2.0_Chr1g0375971 Rosa chinensis HOM05D000005 ORTHO05D035308 3.1e-09 65.9 62 59.7
MD08G1230200 Malus domestica HOM05D000005 ORTHO05D000012 4.1e-09 65.5 62 61.3
RcHm_v2.0_Chr6g0260811 Rosa chinensis HOM05D000005 ORTHO05D000012 4.1e-09 65.5 62 53.2
RcHm_v2.0_Chr4g0401031 Rosa chinensis HOM05D037337 ORTHO05D001748 5.3e-09 65.1 62 58.1
Gohir.D11G295200 Gossypium hirsutum HOM05D000005 ORTHO05D000012 7.0e-09 64.7 62 54.8
Gorai.007G318500 Gossypium raimondii HOM05D000005 ORTHO05D000012 7.0e-09 64.7 62 54.8
MD01G1189000 Malus domestica HOM05D000005 ORTHO05D001748 7.0e-09 64.7 62 56.5
MD01G1190100 Malus domestica HOM05D000005 ORTHO05D000012 7.0e-09 64.7 62 56.5
MD04G1022500 Malus domestica HOM05D000005 ORTHO05D000012 7.0e-09 64.7 65 58.5
GSVIVG01037226001 Vitis vinifera HOM05D000005 ORTHO05D011281 7.0e-09 64.7 61 55.7
Ciclev10023913m.g Citrus clementina HOM05D000005 ORTHO05D000012 9.1e-09 64.3 62 54.8
MD01G1188900 Malus domestica HOM05D000005 ORTHO05D000012 1.2e-08 63.9 62 58.1
MD07G1260000 Malus domestica HOM05D000005 ORTHO05D000012 1.2e-08 63.9 46 71.7
RcHm_v2.0_Chr6g0270391 Rosa chinensis HOM05D000005 ORTHO05D000012 1.2e-08 63.9 128 35.9
Eucgr.H01423 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.6e-08 63.5 61 52.5
FAN09G0361 Fragaria x ananassa HOM05D000005 ORTHO05D015660 1.6e-08 63.5 62 54.8
QL01p031834 Quercus lobata HOM05D000005 ORTHO05D000012 1.6e-08 63.5 62 58.1
GSVIVG01037219001 Vitis vinifera HOM05D000005 ORTHO05D011281 1.6e-08 63.5 61 54.1
Ciclev10018553m.g Citrus clementina HOM05D000005 ORTHO05D000012 2.0e-08 63.2 62 59.7
Ciclev10018572m.g Citrus clementina HOM05D000005 ORTHO05D000012 2.0e-08 63.2 62 56.5
FAN03G2805 Fragaria x ananassa HOM05D000005 ORTHO05D015660 2.0e-08 63.2 62 54.8
FAN03G3194 Fragaria x ananassa HOM05D000005 ORTHO05D015660 2.0e-08 63.2 62 54.8
RcHm_v2.0_Chr4g0387281 Rosa chinensis HOM05D000005 ORTHO05D000012 2.0e-08 63.2 148 31.1
Glyma.16G215000 Glycine max HOM05D000005 ORTHO05D000012 2.7e-08 62.8 59 55.9
FAN03G2447 Fragaria x ananassa HOM05D000005 ORTHO05D001748 3.5e-08 62.4 59 57.6
RcHm_v2.0_Chr1g0349221 Rosa chinensis HOM05D000005 ORTHO05D000012 4.5e-08 62.0 62 56.5
Glyma.16G213800 Glycine max HOM05D000005 ORTHO05D000012 5.9e-08 61.6 59 54.2
Gohir.A11G282513 Gossypium hirsutum HOM05D000005 ORTHO05D000012 5.9e-08 61.6 62 54.8
GSVIVG01025958001 Vitis vinifera HOM05D000005 ORTHO05D011281 1.0e-07 60.8 62 50.0
FvH4_7g28530 Fragaria vesca HOM05D000005 ORTHO05D000012 1.3e-07 60.5 62 54.8
FAN14G2073 Fragaria x ananassa HOM05D000005 ORTHO05D015660 1.3e-07 60.5 62 53.2
MD02G1109700 Malus domestica HOM05D000005 ORTHO05D000012 1.3e-07 60.5 62 51.6
Prupe.2G055200 Prunus persica HOM05D000005 ORTHO05D000012 1.3e-07 60.5 62 53.2
RcHm_v2.0_Chr1g0375911 Rosa chinensis HOM05D000005 ORTHO05D000012 1.3e-07 60.5 62 53.2
GSVIVG01037218001 Vitis vinifera HOM05D000005 ORTHO05D011281 1.3e-07 60.5 62 51.6
MD02G1260400 Malus domestica HOM05D000005 ORTHO05D000012 1.7e-07 60.1 62 50.0
Prupe.2G057100 Prunus persica HOM05D000005 ORTHO05D020377 1.7e-07 60.1 62 56.5
RcHm_v2.0_Chr1g0335971 Rosa chinensis HOM05D000005 ORTHO05D001748 1.7e-07 60.1 62 54.8
RcHm_v2.0_Chr6g0287571 Rosa chinensis HOM05D000005 ORTHO05D001748 1.7e-07 60.1 62 50.0
arahy.Tifrunner.gnm1.ann1.7J0RKL Arachis hypogaea HOM05D000005 ORTHO05D000012 2.2e-07 59.7 62 46.8
Eucgr.E03288 Eucalyptus grandis HOM05D000005 ORTHO05D000012 2.2e-07 59.7 61 50.8
Eucgr.H01427 Eucalyptus grandis HOM05D000005 ORTHO05D000012 2.2e-07 59.7 61 49.2
FvH4_6g01690 Fragaria vesca HOM05D000005 ORTHO05D015660 2.2e-07 59.7 59 54.2
FAN14G2148 Fragaria x ananassa HOM05D000005 ORTHO05D015660 2.2e-07 59.7 59 54.2
Lj2g0012327 Lotus japonicus HOM05D000005 ORTHO05D000012 2.2e-07 59.7 61 42.6
Prupe.5G019000 Prunus persica HOM05D000005 ORTHO05D000012 2.2e-07 59.7 62 53.2
QL09p052060 Quercus lobata HOM05D000005 ORTHO05D000012 2.2e-07 59.7 62 53.2
GSVIVG01022979001 Vitis vinifera HOM05D000005 ORTHO05D000012 2.2e-07 59.7 141 57.4
Carub.0005s1032 Capsella rubella HOM05D000005 ORTHO05D000449 2.9e-07 59.3 146 30.8
Ciclev10007011m.g Citrus clementina HOM05D000005 ORTHO05D000012 2.9e-07 59.3 134 65.7
Ciclev10024485m.g Citrus clementina HOM05D000005 ORTHO05D000012 2.9e-07 59.3 62 54.8
Gohir.A11G284200 Gossypium hirsutum HOM05D000005 ORTHO05D000012 2.9e-07 59.3 62 56.5
QL03p017067 Quercus lobata HOM05D000005 ORTHO05D000012 2.9e-07 59.3 56 57.1
QL07p006276 Quercus lobata HOM05D000005 ORTHO05D000012 2.9e-07 59.3 62 51.6
Eucgr.E03289 Eucalyptus grandis HOM05D000005 ORTHO05D000012 3.8e-07 58.9 61 49.2
FAN10G0934 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.8e-07 58.9 62 51.6
Gohir.D11G296948 Gossypium hirsutum HOM05D000005 ORTHO05D000012 3.8e-07 58.9 62 56.5
Gorai.007G321800 Gossypium raimondii HOM05D000005 ORTHO05D000012 3.8e-07 58.9 62 56.5
Prupe.1G160500 Prunus persica HOM05D000005 ORTHO05D000012 3.8e-07 58.9 62 50.0
Prupe.2G066600 Prunus persica HOM05D000005 ORTHO05D000012 3.8e-07 58.9 59 57.6
Prupe.2G068100 Prunus persica HOM05D000005 ORTHO05D000012 3.8e-07 58.9 62 53.2
GSVIVG01037222001 Vitis vinifera HOM05D000005 ORTHO05D011281 3.8e-07 58.9 61 52.5
Eucgr.L02373 Eucalyptus grandis HOM05D000005 ORTHO05D000012 5.0e-07 58.5 61 45.9
FAN03G2217 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.0e-07 58.5 54 59.3
Gohir.A11G283600 Gossypium hirsutum HOM05D000005 ORTHO05D000012 5.0e-07 58.5 62 53.2
Gohir.A11G283813 Gossypium hirsutum HOM05D000005 ORTHO05D000012 5.0e-07 58.5 52 57.7
Gohir.A11G284400 Gossypium hirsutum HOM05D000005 ORTHO05D000012 5.0e-07 58.5 62 56.5
Potri.019G002500 Populus trichocarpa HOM05D000005 ORTHO05D000012 5.0e-07 58.5 62 46.8
Prupe.8G176400 Prunus persica HOM05D000005 ORTHO05D000012 5.0e-07 58.5 59 49.2
RcHm_v2.0_Chr3g0451581 Rosa chinensis HOM05D000005 ORTHO05D000012 5.0e-07 58.5 56 51.8
PGSC0003DMG400029415 Solanum tuberosum HOM05D000005 ORTHO05D000012 5.0e-07 58.5 62 48.4
CiPaw.15G118900 Carya illinoinensis HOM05D000005 ORTHO05D000012 6.5e-07 58.2 62 51.6
Ciclev10018528m.g Citrus clementina HOM05D000005 ORTHO05D000012 6.5e-07 58.2 62 56.5
Medtr8g042650 Medicago truncatula HOM05D000005 ORTHO05D000012 6.5e-07 58.2 59 54.2
Prupe.2G057600 Prunus persica HOM05D000005 ORTHO05D000012 6.5e-07 58.2 62 51.6
QL08p044305 Quercus lobata HOM05D000005 ORTHO05D000012 6.5e-07 58.2 62 46.8
VMungo0464G1965 Vigna mungo HOM05D000005 ORTHO05D000012 6.5e-07 58.2 56 55.4
Glyma.16G214000 Glycine max HOM05D000005 ORTHO05D000012 8.5e-07 57.8 59 52.5
MD02G1260000 Malus domestica HOM05D000005 ORTHO05D000012 8.5e-07 57.8 62 53.2
Medtr6g077460 Medicago truncatula HOM05D000005 ORTHO05D000012 8.5e-07 57.8 60 51.7
QL03p016978 Quercus lobata HOM05D000005 ORTHO05D000012 8.5e-07 57.8 55 56.4
QL03p017232 Quercus lobata HOM05D000005 ORTHO05D000012 8.5e-07 57.8 55 56.4
QL09p051938 Quercus lobata HOM05D000005 ORTHO05D000012 8.5e-07 57.8 61 55.7
QL09p052750 Quercus lobata HOM05D000005 ORTHO05D000012 8.5e-07 57.8 62 54.8
THA.LOC104811195 Tarenaya hassleriana HOM05D000005 ORTHO05D000012 8.5e-07 57.8 62 51.6
Glyma.08G301200 Glycine max HOM05D000005 ORTHO05D000012 1.1e-06 57.4 59 47.5
Gohir.D11G296916 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.1e-06 57.4 62 54.8
QL07p003457 Quercus lobata HOM05D000005 ORTHO05D000012 1.1e-06 57.4 62 48.4
Sed0000589 Sechium edule HOM05D000005 ORTHO05D000012 1.1e-06 57.4 62 51.6
Sed0001473 Sechium edule HOM05D000005 ORTHO05D000012 1.1e-06 57.4 62 51.6
Ca_00381_v3 Cicer arietinum L. HOM05D000005 ORTHO05D000012 1.5e-06 57.0 59 54.2
MD02G1278900 Malus domestica HOM05D000005 ORTHO05D000012 1.5e-06 57.0 62 51.6
Medtr8g042660 Medicago truncatula HOM05D000005 ORTHO05D000012 1.5e-06 57.0 59 50.8
QL07p014356 Quercus lobata HOM05D000005 ORTHO05D000012 1.5e-06 57.0 56 50.0
QL09p051998 Quercus lobata HOM05D000005 ORTHO05D000012 1.5e-06 57.0 62 51.6
Ciclev10023686m.g Citrus clementina HOM05D000005 ORTHO05D000012 1.9e-06 56.6 62 54.8
Ciclev10023938m.g Citrus clementina HOM05D000005 ORTHO05D000012 1.9e-06 56.6 62 53.2
Eucgr.H01449 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.9e-06 56.6 61 47.5
MD04G1022900 Malus domestica HOM05D000005 ORTHO05D000012 1.9e-06 56.6 54 55.6
MD10G1131200 Malus domestica HOM05D000005 ORTHO05D000012 1.9e-06 56.6 133 32.3
RcHm_v2.0_Chr7g0223661 Rosa chinensis HOM05D000005 ORTHO05D000012 1.9e-06 56.6 62 48.4
CARHR176940 Cardamine hirsuta HOM05D000005 ORTHO05D012152 2.5e-06 56.2 60 56.7
Ca_25369_v3 Cicer arietinum L. HOM05D009465 ORTHO05D012186 2.5e-06 56.2 58 44.8
Ciclev10024735m.g Citrus clementina HOM05D000005 ORTHO05D000012 2.5e-06 56.2 62 51.6
Glyma.10G184400 Glycine max HOM05D000005 ORTHO05D000012 2.5e-06 56.2 58 48.3
Gohir.D11G296800 Gossypium hirsutum HOM05D000005 ORTHO05D000012 2.5e-06 56.2 62 54.8
arahy.Tifrunner.gnm1.ann1.VF2B86 Arachis hypogaea HOM05D000005 ORTHO05D000012 3.2e-06 55.8 62 46.8
Duzib268G0652 Durio zibethinus HOM05D000005 ORTHO05D000012 3.2e-06 55.8 62 51.6
Eucgr.E03278 Eucalyptus grandis HOM05D000005 ORTHO05D000012 3.2e-06 55.8 61 47.5
Gohir.A11G284300 Gossypium hirsutum HOM05D000005 ORTHO05D000012 3.2e-06 55.8 62 54.8
Gohir.A11G285360 Gossypium hirsutum HOM05D000005 ORTHO05D000012 3.2e-06 55.8 62 53.2
QL05p008400 Quercus lobata HOM05D000005 ORTHO05D000012 3.2e-06 55.8 60 55.0
QL09p052923 Quercus lobata HOM05D000005 ORTHO05D000012 3.2e-06 55.8 60 51.7
Ciclev10024297m.g Citrus clementina HOM05D000005 ORTHO05D000012 4.2e-06 55.5 62 51.6
Eucgr.E03077 Eucalyptus grandis HOM05D000005 ORTHO05D000012 4.2e-06 55.5 61 47.5
Gohir.A01G064200 Gossypium hirsutum HOM05D000005 ORTHO05D000012 4.2e-06 55.5 60 53.3
MD10G1137400 Malus domestica HOM05D000005 ORTHO05D000012 4.2e-06 55.5 59 49.2
QL03p017352 Quercus lobata HOM05D000005 ORTHO05D000012 4.2e-06 55.5 56 51.8
QL10p051133 Quercus lobata HOM05D000005 ORTHO05D001748 4.2e-06 55.5 57 56.1
QL11p042647 Quercus lobata HOM05D000005 ORTHO05D000012 4.2e-06 55.5 56 51.8
QL11p043122 Quercus lobata HOM05D000005 ORTHO05D000012 4.2e-06 55.5 56 51.8
RcHm_v2.0_Chr7g0225191 Rosa chinensis HOM05D000005 ORTHO05D000012 4.2e-06 55.5 62 48.4
RcHm_v2.0_Chr7g0237431 Rosa chinensis HOM05D000005 ORTHO05D011727 4.2e-06 55.5 55 54.5
TPR.G6207 Trifolium pratense HOM05D000005 ORTHO05D000012 4.2e-06 55.5 62 51.6
VMungo0464G1714 Vigna mungo HOM05D000005 ORTHO05D000012 4.2e-06 55.5 47 53.2
arahy.Tifrunner.gnm1.ann1.WVJ4GZ Arachis hypogaea HOM05D000005 ORTHO05D000012 5.5e-06 55.1 58 39.7
Eucgr.E03292 Eucalyptus grandis HOM05D000005 ORTHO05D000012 5.5e-06 55.1 61 47.5
Glyma.16G159600 Glycine max HOM05D000005 ORTHO05D000012 5.5e-06 55.1 62 48.4
Glyma.16G213900 Glycine max HOM05D000005 ORTHO05D000012 5.5e-06 55.1 60 50.0
Glyma.16G214669 Glycine max HOM05D000005 ORTHO05D000012 5.5e-06 55.1 48 58.3
Glyma.16G214900 Glycine max HOM05D000005 ORTHO05D000012 5.5e-06 55.1 59 49.2
Lj4g0004538 Lotus japonicus HOM05D000005 ORTHO05D017065 5.5e-06 55.1 62 48.4
QL03p004867 Quercus lobata HOM05D000005 ORTHO05D000012 5.5e-06 55.1 56 51.8
RcHm_v2.0_Chr1g0375941 Rosa chinensis HOM05D000005 ORTHO05D000012 5.5e-06 55.1 62 51.6
AT3G44480 Arabidopsis thaliana HOM05D000005 ORTHO05D000449 7.2e-06 54.7 149 28.9
CiPaw.15G170600 Carya illinoinensis HOM05D000005 ORTHO05D000012 7.2e-06 54.7 62 50.0
FAN06G2483 Fragaria x ananassa HOM05D000005 ORTHO05D001748 7.2e-06 54.7 62 46.8
MD10G1136400 Malus domestica HOM05D000005 ORTHO05D000012 7.2e-06 54.7 59 49.2
RcHm_v2.0_Chr5g0013881 Rosa chinensis HOM05D000005 ORTHO05D000012 7.2e-06 54.7 55 47.3
GSVIVG01020962001 Vitis vinifera HOM05D000005 ORTHO05D000012 7.2e-06 54.7 63 49.2
CiPaw.15G177500 Carya illinoinensis HOM05D000005 ORTHO05D000012 9.4e-06 54.3 62 48.4
Ca_27388_v3 Cicer arietinum L. HOM05D000005 ORTHO05D000012 9.4e-06 54.3 62 46.8
FvH4_5g39160 Fragaria vesca HOM05D000005 ORTHO05D000294 9.4e-06 54.3 63 52.4
Glyma.16G127900 Glycine max HOM05D000005 ORTHO05D000012 9.4e-06 54.3 59 50.8
Glyma.16G159700 Glycine max HOM05D000005 ORTHO05D000012 9.4e-06 54.3 62 46.8
Lj1g0020006 Lotus japonicus HOM05D000005 ORTHO05D000012 9.4e-06 54.3 59 47.5
Lj4g0013302 Lotus japonicus HOM05D000005 ORTHO05D000012 9.4e-06 54.3 62 48.4
MD02G1260200 Malus domestica HOM05D000005 ORTHO05D000012 9.4e-06 54.3 45 62.2
Medtr6g072460 Medicago truncatula HOM05D000005 ORTHO05D000012 9.4e-06 54.3 62 43.5
Prupe.6G152300 Prunus persica HOM05D000005 ORTHO05D000012 9.4e-06 54.3 62 48.4
QL07p002752 Quercus lobata HOM05D000005 ORTHO05D000012 9.4e-06 54.3 62 46.8
RcHm_v2.0_Chr6g0270371 Rosa chinensis HOM05D000005 ORTHO05D001748 9.4e-06 54.3 62 50.0
TPR.G27686 Trifolium pratense HOM05D000005 ORTHO05D000012 9.4e-06 54.3 62 48.4
TPR.G6261 Trifolium pratense HOM05D000005 ORTHO05D000012 9.4e-06 54.3 62 48.4


User provided reference genes

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