Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1239500 Malus domestica HOM05D004409 ORTHO05D005292 7.6e-58 226.9 108 100.0
RcHm_v2.0_Chr1g0328141 Rosa chinensis HOM05D004409 ORTHO05D005292 6.7e-30 134.0 101 57.4
RcHm_v2.0_Chr1g0372991 Rosa chinensis HOM05D004409 ORTHO05D005292 8.8e-30 133.7 101 57.4
FvH4_7g26430 Fragaria vesca HOM05D004409 ORTHO05D005292 2.5e-29 132.1 102 57.8
RcHm_v2.0_Chr1g0372951 Rosa chinensis HOM05D004409 ORTHO05D005292 9.7e-29 130.2 89 62.9
RcHm_v2.0_Chr1g0328171 Rosa chinensis HOM05D004409 ORTHO05D005292 2.2e-28 129.0 89 61.8
Dinv34530 Davidia involucrata HOM05D004409 ORTHO05D005292 2.8e-28 128.6 101 55.4
FAN10G4140 Fragaria x ananassa HOM05D004409 ORTHO05D005292 2.8e-28 128.6 102 57.8
COL.COLO4_37301 Corchorus olitorius HOM05D004409 ORTHO05D005292 4.8e-28 127.9 88 62.5
FvH4_7g26400 Fragaria vesca HOM05D004409 ORTHO05D005292 8.2e-28 127.1 106 52.8
FAN10G3781 Fragaria x ananassa HOM05D004409 ORTHO05D005292 8.2e-28 127.1 106 51.9
FAN06G5092 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.1e-27 126.7 99 57.6
Thecc.03G144800 Theobroma cacao HOM05D004409 ORTHO05D005292 1.1e-27 126.7 108 53.7
FAN03G2468 Fragaria x ananassa HOM05D004409 ORTHO05D005292 3.1e-27 125.2 102 52.9
FAN01G0604 Fragaria x ananassa HOM05D004409 ORTHO05D005292 4.1e-27 124.8 102 55.9
Prupe.7G057100 Prunus persica HOM05D004409 ORTHO05D005292 1.5e-26 122.9 102 56.9
Duzib205G0410 Durio zibethinus HOM05D004409 ORTHO05D005292 2.6e-26 122.1 102 53.9
CANSAT56G2887 Cannabis sativa HOM05D004409 ORTHO05D005292 7.7e-26 120.6 98 55.1
TWI39G0819 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 7.7e-26 120.6 93 53.8
Atru.chr6.1971 Acer truncatum HOM05D004409 ORTHO05D005292 1.3e-25 119.8 99 53.5
Actinidia01026 Actinidia chinensis HOM05D004409 ORTHO05D005292 1.7e-25 119.4 105 51.4
Thecc.03G144900 Theobroma cacao HOM05D004409 ORTHO05D005292 1.7e-25 119.4 103 51.5
FAN17G1151 Fragaria x ananassa HOM05D004409 ORTHO05D005292 2.2e-25 119.0 103 51.5
Thecc.03G144700 Theobroma cacao HOM05D004409 ORTHO05D005292 2.2e-25 119.0 108 51.9
TWI39G0462 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 2.2e-25 119.0 103 51.5
TWI39G0310 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 2.9e-25 118.6 103 52.4
COL.COLO4_37302 Corchorus olitorius HOM05D004409 ORTHO05D005292 5.0e-25 117.9 82 57.3
TWI39G0193 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.9e-24 115.9 103 50.5
PGR142G3629 Punica granatum HOM05D004409 ORTHO05D005292 2.5e-24 115.5 106 49.1
GSVIVG01013894001 Vitis vinifera HOM05D004409 ORTHO05D005292 3.2e-24 115.2 90 53.3
Gohir.D12G214900 Gossypium hirsutum HOM05D004409 ORTHO05D005292 1.6e-23 112.8 98 51.0
GSVIVG01024506001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.6e-23 112.8 91 52.7
Hma1.2p1_1014F.1_g247850 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 2.1e-23 112.5 106 49.1
CANSAT56G4079 Cannabis sativa HOM05D004409 ORTHO05D005292 4.7e-23 111.3 102 50.0
Gohir.A12G212400 Gossypium hirsutum HOM05D004409 ORTHO05D005292 4.7e-23 111.3 98 49.0
CANSAT56G0658 Cannabis sativa HOM05D004409 ORTHO05D005292 6.1e-23 110.9 102 50.0
Gorai.008G230500 Gossypium raimondii HOM05D004409 ORTHO05D005292 6.1e-23 110.9 98 49.0
Eucgr.K00114 Eucalyptus grandis HOM05D004409 ORTHO05D005292 7.9e-23 110.5 86 54.7
CANSAT56G2756 Cannabis sativa HOM05D004409 ORTHO05D005292 1.0e-22 110.2 102 49.0
MD07G1239700 Malus domestica HOM05D004409 ORTHO05D005292 1.4e-22 109.8 110 50.9
GSVIVG01013816001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.4e-22 109.8 89 51.7
Atru.chr9.1196 Acer truncatum HOM05D004409 ORTHO05D005292 1.8e-22 109.4 85 54.1
Cpa.g.sc13.213 Carica papaya HOM05D004409 ORTHO05D005292 1.8e-22 109.4 102 49.0
Oeu019420.1 Olea europaea HOM05D004409 ORTHO05D005292 1.8e-22 109.4 101 46.5
GSVIVG01013815001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.8e-22 109.4 112 42.0
Atru.chr9.1197 Acer truncatum HOM05D004409 ORTHO05D005292 2.3e-22 109.0 105 48.6
Potri.003G084000 Populus trichocarpa HOM05D004409 ORTHO05D005292 3.0e-22 108.6 101 48.5
TWI60G0543 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 3.0e-22 108.6 98 45.9
GSVIVG01004836001 Vitis vinifera HOM05D004409 ORTHO05D005292 3.0e-22 108.6 96 49.0
Ciclev10022894m.g Citrus clementina HOM05D004409 ORTHO05D005292 3.9e-22 108.2 78 51.3
Ciclev10030379m.g Citrus clementina HOM05D004409 ORTHO05D005292 3.9e-22 108.2 80 55.0
Peaxi162Scf00102g00085 Petunia axillaris HOM05D004409 ORTHO05D005292 3.9e-22 108.2 93 48.4
Thecc.03G239100 Theobroma cacao HOM05D004409 ORTHO05D005292 5.1e-22 107.8 98 46.9
Aqoxy6G00065 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 8.8e-22 107.1 102 43.1
DCAR_008327 Daucus carota HOM05D004409 ORTHO05D005292 1.1e-21 106.7 80 55.0
MD07G1239800 Malus domestica HOM05D004409 ORTHO05D005292 1.1e-21 106.7 115 50.4
Dinv28881 Davidia involucrata HOM05D004409 ORTHO05D005292 1.5e-21 106.3 88 51.1
Actinidia10866 Actinidia chinensis HOM05D004409 ORTHO05D005292 2.0e-21 105.9 101 48.5
Ciclev10022946m.g Citrus clementina HOM05D004409 ORTHO05D005292 2.0e-21 105.9 83 53.0
Hma1.2p1_1014F.1_g247830 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 2.6e-21 105.5 86 50.0
Actinidia31492 Actinidia chinensis HOM05D004409 ORTHO05D005292 3.3e-21 105.1 100 47.0
ECA240G0589 Erigeron canadensis HOM05D004409 ORTHO05D005292 3.3e-21 105.1 105 40.0
HanXRQChr13g0419051 Helianthus annuus HOM05D004409 ORTHO05D005292 3.3e-21 105.1 98 41.8
Ciclev10033339m.g Citrus clementina HOM05D004409 ORTHO05D005292 4.4e-21 104.8 80 52.5
Dinv25140 Davidia involucrata HOM05D004409 ORTHO05D005292 4.4e-21 104.8 106 48.1
Duzib205G0528 Durio zibethinus HOM05D004409 ORTHO05D005292 4.4e-21 104.8 98 44.9
CSS0044628 Camellia sinensis var. sinensis HOM05D004409 ORTHO05D005292 5.7e-21 104.4 98 45.9
DCAR_003519 Daucus carota HOM05D004409 ORTHO05D005292 5.7e-21 104.4 77 51.9
Manes.01G089900 Manihot esculenta HOM05D004409 ORTHO05D005292 5.7e-21 104.4 97 48.5
Sabra03G0054600 Salix brachista HOM05D004409 ORTHO05D005292 5.7e-21 104.4 101 46.5
Cc06_g12260 Coffea canephora HOM05D004409 ORTHO05D005292 7.4e-21 104.0 90 48.9
Nitab4.5_0000185g0190 Nicotiana tabacum HOM05D004409 ORTHO05D005292 7.4e-21 104.0 98 45.9
CANSAT21G0033 Cannabis sativa HOM05D004409 ORTHO05D005292 1.3e-20 103.2 106 45.3
QL12p008592 Quercus lobata HOM05D004409 ORTHO05D005292 1.3e-20 103.2 83 51.8
GSVIVG01004838001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.3e-20 103.2 91 48.4
Cc08_g11210 Coffea canephora HOM05D004409 ORTHO05D005292 1.7e-20 102.8 105 44.8
HanXRQChr13g0419061 Helianthus annuus HOM05D004409 ORTHO05D005292 2.2e-20 102.4 105 42.9
CANSAT21G0737 Cannabis sativa HOM05D004409 ORTHO05D005292 3.7e-20 101.7 103 45.6
Aqoxy3G02644 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 4.8e-20 101.3 106 44.3
Cfa012333 Carpinus fangiana HOM05D004409 ORTHO05D005292 6.3e-20 100.9 79 51.9
COL.COLO4_21695 Corchorus olitorius HOM05D004409 ORTHO05D005292 6.3e-20 100.9 80 50.0
ECA240G1407 Erigeron canadensis HOM05D004409 ORTHO05D005292 6.3e-20 100.9 84 46.4
HanXRQChr03g0089681 Helianthus annuus HOM05D004409 ORTHO05D005292 6.3e-20 100.9 105 41.0
Thecc.07G180600 Theobroma cacao HOM05D004409 ORTHO05D005292 6.3e-20 100.9 100 42.0
GSVIVG01004835001 Vitis vinifera HOM05D004409 ORTHO05D005292 6.3e-20 100.9 102 41.2
Hma1.2p1_3159F.1_g333389 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 8.2e-20 100.5 97 46.4
Hund27103 Selenicereus undatus HOM05D004409 ORTHO05D005292 8.2e-20 100.5 106 38.7
Lsat_1_v5_gn_6_94501 Lactuca sativa HOM05D004409 ORTHO05D005292 1.1e-19 100.1 105 41.9
Duzib068G1042 Durio zibethinus HOM05D004409 ORTHO05D005292 1.8e-19 99.4 104 42.3
Hma1.2p1_1014F.1_g247840 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 1.8e-19 99.4 106 45.3
EL10Ac1g00121 Beta vulgaris HOM05D004409 ORTHO05D005292 3.1e-19 98.6 107 43.0
GSVIVG01024502001 Vitis vinifera HOM05D004409 ORTHO05D005292 3.1e-19 98.6 112 39.3
COL.COLO4_06685 Corchorus olitorius HOM05D004409 ORTHO05D005292 5.3e-19 97.8 80 48.8
GSVIVG01004822001 Vitis vinifera HOM05D004409 ORTHO05D005292 5.3e-19 97.8 83 45.8
GSVIVG01004827001 Vitis vinifera HOM05D004409 ORTHO05D005292 5.3e-19 97.8 83 45.8
Migut.H01907 Erythranthe guttata HOM05D004409 ORTHO05D005292 6.9e-19 97.4 112 42.9
Peaxi162Scf00391g00715 Petunia axillaris HOM05D004409 ORTHO05D005292 6.9e-19 97.4 77 46.8
PGSC0003DMG400026212 Solanum tuberosum HOM05D004409 ORTHO05D005292 6.9e-19 97.4 88 45.5
CAN.G845.22 Capsicum annuum HOM05D004409 ORTHO05D005292 9.1e-19 97.1 85 44.7
Oeu056339.1 Olea europaea HOM05D004409 ORTHO05D005292 9.1e-19 97.1 98 41.8
THA.LOC104809923 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 9.1e-19 97.1 83 45.8
TAR375G0026 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.2e-18 96.7 103 44.7
Gohir.D13G124300 Gossypium hirsutum HOM05D004409 ORTHO05D005292 1.5e-18 96.3 77 48.1
TAR375G0498 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.5e-18 96.3 101 44.6
SGA_v2.0_scaffold91G28102 Striga asiatica HOM05D004409 ORTHO05D005292 2.0e-18 95.9 105 45.7
TAR636G0884 Trochodendron aralioides HOM05D004409 ORTHO05D005292 2.0e-18 95.9 98 42.9
GSVIVG01013825001 Vitis vinifera HOM05D004409 ORTHO05D005292 2.0e-18 95.9 97 43.3
Cfa012334 Carpinus fangiana HOM05D004409 ORTHO05D005292 2.6e-18 95.5 79 50.6
CAN.G572.17 Capsicum annuum HOM05D004409 ORTHO05D005292 3.4e-18 95.1 92 43.5
COL.COLO4_32251 Corchorus olitorius HOM05D004409 ORTHO05D005292 3.4e-18 95.1 104 41.3
Migut.H01906 Erythranthe guttata HOM05D004409 ORTHO05D005292 5.9e-18 94.4 107 41.1
DCAR_005587 Daucus carota HOM05D004409 ORTHO05D005292 1.0e-17 93.6 100 43.0
Duzib068G0789 Durio zibethinus HOM05D004409 ORTHO05D005292 1.3e-17 93.2 94 42.6
Dinv28880 Davidia involucrata HOM05D001887 ORTHO05D003756 1.7e-17 92.8 100 43.0
MELO3C014170.2 Cucumis melo HOM05D004409 ORTHO05D005292 2.2e-17 92.4 100 39.0
Prupe.5G054600 Prunus persica HOM05D004409 ORTHO05D005292 2.2e-17 92.4 90 42.2
TAR375G0484 Trochodendron aralioides HOM05D004409 ORTHO05D005292 3.8e-17 91.7 101 40.6
GSVIVG01004832001 Vitis vinifera HOM05D004409 ORTHO05D005292 3.8e-17 91.7 85 41.2
HanXRQChr13g0418291 Helianthus annuus HOM05D004409 ORTHO05D005292 5.0e-17 91.3 84 41.7
Lsat_1_v5_gn_6_94401 Lactuca sativa HOM05D004409 ORTHO05D005292 5.0e-17 91.3 101 41.6
PGR042G3450 Punica granatum HOM05D004409 ORTHO05D005292 6.5e-17 90.9 98 42.9
Thecc.08G189000 Theobroma cacao HOM05D004409 ORTHO05D005292 6.5e-17 90.9 76 46.1
Actinidia25914 Actinidia chinensis HOM05D004409 ORTHO05D005292 1.1e-16 90.1 104 38.5
CsaV3_3G004710 Cucumis sativus L. HOM05D004409 ORTHO05D005292 1.1e-16 90.1 83 42.2
Sed0027041 Sechium edule HOM05D004409 ORTHO05D005292 1.4e-16 89.7 108 38.0
HanXRQChr03g0089691 Helianthus annuus HOM05D004409 ORTHO05D005292 1.9e-16 89.4 101 39.6
Oeu006074.1 Olea europaea HOM05D004409 ORTHO05D005292 2.5e-16 89.0 80 46.2
THA.LOC104816486 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 4.2e-16 88.2 92 39.1
MELO3C013895.2 Cucumis melo HOM05D004409 ORTHO05D005292 5.5e-16 87.8 100 38.0
ECA240G4009 Erigeron canadensis HOM05D004409 ORTHO05D005292 5.5e-16 87.8 80 41.2
Eucgr.K00115 Eucalyptus grandis HOM05D004409 ORTHO05D005292 5.5e-16 87.8 88 48.9
TAR375G0880 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.2e-15 86.7 97 41.2
CsaV3_3G002240 Cucumis sativus L. HOM05D004409 ORTHO05D005292 1.6e-15 86.3 78 42.3
ATR1136G026 Amborella trichopoda HOM05D004409 ORTHO05D005292 2.1e-15 85.9 73 45.2
MSTRG.27238 Avicennia marina HOM05D004409 ORTHO05D005292 2.1e-15 85.9 104 42.3
ATR1136G211 Amborella trichopoda HOM05D004409 ORTHO05D005292 8.0e-15 84.0 100 40.0
Aa31LG9G14800 Aethionema arabicum HOM05D004409 ORTHO05D005292 1.4e-14 83.2 100 36.0
ClCG10G002150 Citrullus lanatus HOM05D004409 ORTHO05D005292 1.4e-14 83.2 96 36.5
Migut.J00932 Erythranthe guttata HOM05D004409 ORTHO05D005292 6.7e-14 80.9 101 41.6
ATR1136G215 Amborella trichopoda HOM05D004409 ORTHO05D005292 1.1e-13 80.1 95 34.7
Ciclev10033338m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.5e-13 79.7 91 36.3
Haze_08359 Corylus avellana HOM05D004409 ORTHO05D005292 2.2e-12 75.9 89 39.3
Sp6g08250 Schrenkiella parvula HOM05D004409 ORTHO05D005292 3.1e-11 72.0 95 33.7
BcaB04g18966 Brassica carinata HOM05D004409 ORTHO05D005292 5.3e-11 71.2 102 33.3
Gorai.013G138900 Gossypium raimondii HOM05D004409 ORTHO05D005292 5.3e-11 71.2 60 46.7
BcaC01g03728 Brassica carinata HOM05D004409 ORTHO05D005292 1.2e-10 70.1 102 34.3
ATR0745G048 Amborella trichopoda HOM05D004409 ORTHO05D005292 3.5e-10 68.6 100 32.0
Carub.0006s2782 Capsella rubella HOM05D004409 ORTHO05D005292 3.5e-10 68.6 94 33.0
PSO339G0161 Papaver somniferum HOM05D002739 ORTHO05D002877 7.7e-10 67.4 103 35.9
A03p40420 Brassica napus HOM05D004409 ORTHO05D005292 1.7e-09 66.2 100 33.0
C03p49230 Brassica napus HOM05D004409 ORTHO05D005292 1.7e-09 66.2 102 31.4
BolC3t17205H Brassica oleracea HOM05D004409 ORTHO05D005292 1.7e-09 66.2 100 33.0
BraA03t13197Z Brassica rapa HOM05D004409 ORTHO05D005292 1.7e-09 66.2 100 33.0
CARHR260260 Cardamine hirsuta HOM05D004409 ORTHO05D005292 2.2e-09 65.9 94 29.8
SMO134G0054 Selaginella moellendorffii HOM05D004409 ORTHO05D005292 5.0e-09 64.7 96 31.2
PSO339G6632 Papaver somniferum HOM05D002739 ORTHO05D002877 1.2e-07 60.1 102 33.3
BcaB01g02799 Brassica carinata HOM05D004409 ORTHO05D005292 2.1e-07 59.3 107 29.9
C09p37510 Brassica napus HOM05D004489 ORTHO05D032456 2.1e-07 59.3 93 30.1
BolC9t56581H Brassica oleracea HOM05D004489 ORTHO05D032456 2.1e-07 59.3 93 30.1
THA.LOC104800444 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 2.1e-07 59.3 101 33.7
Nn7g36457 Nelumbo nucifera HOM05D002739 ORTHO05D002877 3.6e-07 58.5 108 28.7
Nn2g15045 Nelumbo nucifera HOM05D002739 ORTHO05D002877 6.1e-07 57.8 110 30.0
Nn7g36442 Nelumbo nucifera HOM05D002739 ORTHO05D002877 6.1e-07 57.8 105 29.5
Nn7g36459 Nelumbo nucifera HOM05D002739 ORTHO05D002877 6.1e-07 57.8 106 31.1
Nn7g38448 Nelumbo nucifera HOM05D002739 ORTHO05D002877 6.1e-07 57.8 105 29.5
BcaC04g20961 Brassica carinata HOM05D004489 ORTHO05D032456 8.0e-07 57.4 92 29.3
Dinv34529 Davidia involucrata HOM05D004409 ORTHO05D005292 8.0e-07 57.4 41 58.5
PSO384G1869 Papaver somniferum HOM05D002739 ORTHO05D002877 6.7e-06 54.3 103 32.0


User provided reference genes

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