Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 1.3e-175 619.8 317 100.0
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 3.8e-151 538.5 319 87.8
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 1.2e-131 473.8 317 77.9
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 2.1e-125 453.0 317 73.8
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 9.2e-121 437.6 317 72.9
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 7.8e-120 434.5 317 72.6
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 9.9e-115 417.5 342 67.5
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 3.7e-114 415.6 356 65.4
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 1.9e-113 413.3 331 68.3
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 2.7e-112 409.5 356 65.2
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 6.0e-112 408.3 333 68.8
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 1.0e-111 407.5 347 66.6
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 6.6e-111 404.8 353 63.5
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 8.6e-111 404.4 329 65.7
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 8.6e-111 404.4 329 65.7
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 4.3e-110 402.1 330 65.8
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 5.6e-110 401.7 249 80.7
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 5.6e-110 401.7 346 65.6
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 5.6e-110 401.7 346 64.5
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 7.3e-110 401.4 330 65.8
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 7.3e-110 401.4 332 69.0
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 1.2e-109 400.6 262 76.0
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 2.8e-109 399.4 321 67.3
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 3.6e-109 399.1 346 63.9
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 6.2e-109 398.3 360 62.8
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 6.2e-109 398.3 342 65.8
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 8.1e-109 397.9 347 64.3
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 1.4e-108 397.1 248 81.9
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 2.4e-108 396.4 346 63.3
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 2.4e-108 396.4 319 67.1
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 3.1e-108 396.0 347 64.6
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 3.1e-108 396.0 320 67.2
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 3.1e-108 396.0 252 77.8
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 5.2e-108 395.2 284 71.5
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 6.8e-108 394.8 266 76.7
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 6.8e-108 394.8 341 66.6
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 8.9e-108 394.4 266 76.7
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 1.2e-107 394.0 348 63.5
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 1.5e-107 393.7 273 73.3
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 1.5e-107 393.7 253 76.3
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 2.6e-107 392.9 247 78.5
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 2.6e-107 392.9 291 71.1
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 3.4e-107 392.5 352 62.8
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 4.4e-107 392.1 274 73.4
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 5.8e-107 391.7 320 66.2
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 7.6e-107 391.3 318 66.4
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 7.6e-107 391.3 318 66.4
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 1.3e-106 390.6 321 66.4
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 1.3e-106 390.6 252 77.0
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 2.2e-106 389.8 330 65.2
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 3.8e-106 389.0 244 78.3
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 3.8e-106 389.0 244 78.3
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 4.9e-106 388.7 337 64.7
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 1.1e-105 387.5 252 76.2
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 1.1e-105 387.5 275 72.0
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 1.4e-105 387.1 345 64.3
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 1.9e-105 386.7 303 69.3
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 9.3e-105 384.4 315 65.1
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 9.3e-105 384.4 359 59.6
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 9.3e-105 384.4 354 62.7
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 1.2e-104 384.0 345 63.8
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 2.1e-104 383.3 339 62.8
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 3.5e-104 382.5 294 68.4
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 3.5e-104 382.5 294 68.4
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 3.5e-104 382.5 342 62.3
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 6.0e-104 381.7 246 78.5
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 6.0e-104 381.7 247 75.7
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 7.8e-104 381.3 256 75.8
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 1.3e-103 380.6 333 61.6
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 1.7e-103 380.2 311 65.9
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 2.3e-103 379.8 363 60.3
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 3.0e-103 379.4 338 63.0
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 3.9e-103 379.0 238 78.6
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 5.1e-103 378.6 338 62.7
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 6.6e-103 378.3 363 60.3
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 8.7e-103 377.9 372 57.5
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 8.7e-103 377.9 245 76.3
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 8.7e-103 377.9 245 75.9
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 1.1e-102 377.5 343 62.1
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 1.5e-102 377.1 288 68.4
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.5e-102 376.3 340 60.6
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 4.3e-102 375.6 340 61.5
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 7.3e-102 374.8 304 66.1
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 1.3e-101 374.0 368 57.9
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 1.6e-101 373.6 363 58.1
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 2.8e-101 372.9 254 70.9
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 3.6e-101 372.5 252 73.4
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 4.8e-101 372.1 224 80.4
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 2.4e-100 369.8 214 83.2
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 3.1e-100 369.4 334 63.2
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 5.3e-100 368.6 332 62.3
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 9.0e-100 367.9 253 72.7
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 2.0e-99 366.7 221 81.0
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 4.4e-99 365.5 341 61.6
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 1.3e-98 364.0 376 56.1
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 1.3e-98 364.0 229 75.5
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 2.2e-98 363.2 321 61.7
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 2.2e-98 363.2 323 62.2
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 3.8e-98 362.5 326 63.2
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 2.4e-97 359.8 225 77.8
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 1.0e-95 354.4 270 67.8
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 1.7e-95 353.6 330 58.5
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 1.5e-94 350.5 241 71.8
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 9.6e-94 347.8 311 61.4
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 3.4e-91 339.3 212 75.5
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 2.7e-88 329.7 189 83.1
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 3.7e-85 319.3 345 54.2
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 8.1e-85 318.2 329 53.8
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 8.1e-85 318.2 178 87.1
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 1.1e-84 317.8 252 63.5
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 4.0e-84 315.8 178 88.2
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 2.6e-83 313.2 318 57.9
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 5.8e-83 312.0 254 62.2
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 7.6e-83 311.6 177 85.3
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 7.6e-83 311.6 223 68.2
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 1.3e-79 300.8 345 53.6
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.3e-79 300.8 223 65.5
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.1e-77 293.5 211 70.1
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 2.6e-75 286.6 248 63.7
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 5.8e-75 285.4 230 61.3
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.0e-74 284.6 229 61.1
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 3.8e-74 282.7 223 61.4
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.6e-72 277.3 285 56.8
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 2.9e-66 256.5 147 82.3
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 2.3e-63 246.9 146 78.8
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 8.2e-61 238.4 146 78.8
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 7.7e-59 231.9 130 85.4
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 2.0e-54 217.2 126 80.2
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 1.1e-52 211.5 356 43.3
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.0e-51 207.2 213 48.4
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 5.9e-51 205.7 213 47.9
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 4.7e-48 196.1 339 41.0
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 8.2e-45 185.3 101 87.1
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 1.1e-44 184.9 101 87.1
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 1.1e-44 184.9 101 88.1
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 4.1e-44 183.0 101 86.1
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 9.1e-44 181.8 101 86.1
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 9.1e-44 181.8 101 86.1
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 3.5e-43 179.9 101 85.1
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 3.5e-43 179.9 101 85.1
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 4.5e-43 179.5 101 85.1
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 1.0e-42 178.3 101 84.2
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 1.0e-42 178.3 101 84.2
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 1.0e-42 178.3 234 42.3
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 1.1e-41 174.9 336 39.9
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.6e-38 163.7 165 58.8
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 5.7e-38 162.5 255 37.3
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 1.5e-33 147.9 91 79.1
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 2.3e-31 140.6 101 70.3
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 5.7e-30 136.0 73 91.8
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 5.7e-30 136.0 73 91.8
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 5.7e-30 136.0 73 91.8
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.3e-29 134.8 203 48.8
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 3.7e-29 133.3 160 51.9
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 5.4e-28 129.4 226 42.5
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.6e-27 127.9 110 64.5
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 1.6e-27 127.9 117 59.0
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.9e-25 120.9 205 43.4
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 3.6e-24 116.7 82 67.1
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 1.7e-21 107.8 82 61.0
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 7.0e-20 102.4 54 90.7
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 1.6e-19 101.3 63 73.0
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 1.7e-18 97.8 227 29.1
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 6.6e-18 95.9 56 76.8
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 5.8e-14 82.8 44 90.9
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 7.5e-14 82.4 49 75.5
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 1.1e-12 78.6 48 79.2
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 3.2e-12 77.0 71 59.2


User provided reference genes

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