Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1231300 Malus domestica HOM05D007902 ORTHO05D009839 3.4e-126 454.9 217 100.0
MD01G1163300 Malus domestica HOM05D007902 ORTHO05D009839 2.6e-81 305.8 208 76.9
Prupe.2G261300 Prunus persica HOM05D007902 ORTHO05D009839 3.2e-71 272.3 213 63.8
RcHm_v2.0_Chr1g0371741 Rosa chinensis HOM05D007902 ORTHO05D009839 3.8e-64 248.8 208 63.0
FAN01G1070 Fragaria x ananassa HOM05D001122 ORTHO05D001877 6.4e-56 221.5 213 56.8
FAN03G2841 Fragaria x ananassa HOM05D001122 ORTHO05D001877 7.1e-55 218.0 236 53.0
FvH4_7g25601 Fragaria vesca HOM05D007902 ORTHO05D009839 3.9e-53 212.2 153 69.9
FAN06G1561 Fragaria x ananassa HOM05D007902 ORTHO05D009839 3.1e-50 202.6 168 66.1
Dinv21823 Davidia involucrata HOM05D007902 ORTHO05D009839 5.1e-37 158.7 185 48.6
Potri.019G049100 Populus trichocarpa HOM05D007902 ORTHO05D009839 6.2e-35 151.8 171 49.1
Actinidia07804 Actinidia chinensis HOM05D007902 ORTHO05D009839 1.1e-34 151.0 174 51.1
Sabra19G0058600 Salix brachista HOM05D007902 ORTHO05D009839 6.9e-34 148.3 185 46.5
Haze_17334 Corylus avellana HOM05D007902 ORTHO05D009839 7.6e-33 144.8 178 47.8
TAR623G0347 Trochodendron aralioides HOM05D007902 ORTHO05D009839 7.6e-33 144.8 174 48.9
QL08p064506 Quercus lobata HOM05D007902 ORTHO05D009839 1.0e-32 144.4 175 50.3
Cpa.g.sc19.89 Carica papaya HOM05D007902 ORTHO05D009839 1.7e-32 143.7 189 43.9
Hma1.2p1_0292F.1_g115760 Hydrangea macrophylla HOM05D007902 ORTHO05D009839 2.2e-32 143.3 169 47.3
vmacro09979 Vaccinium macrocarpon HOM05D007902 ORTHO05D009839 4.9e-32 142.1 180 44.4
Manes.07G138200 Manihot esculenta HOM05D007902 ORTHO05D009839 6.5e-32 141.7 192 44.3
Migut.F00588 Erythranthe guttata HOM05D007902 ORTHO05D009839 1.1e-31 141.0 161 49.1
CiPaw.01G304600 Carya illinoinensis HOM05D007902 ORTHO05D009839 4.2e-31 139.0 160 50.0
Ciclev10032767m.g Citrus clementina HOM05D007902 ORTHO05D009839 5.5e-31 138.7 205 44.9
Cc02_g05590 Coffea canephora HOM05D007902 ORTHO05D009839 2.7e-30 136.3 180 48.9
Nn2g10362 Nelumbo nucifera HOM05D007902 ORTHO05D009839 3.0e-29 132.9 175 42.9
Eucgr.G03123 Eucalyptus grandis HOM05D007902 ORTHO05D009839 2.5e-28 129.8 160 46.9
Rhsim09G0183800 Rhododendron simsii HOM05D007902 ORTHO05D009839 1.3e-27 127.5 209 39.7
Peaxi162Scf00464g00015 Petunia axillaris HOM05D007902 ORTHO05D009839 1.8e-26 123.6 165 45.5
HanXRQChr09g0251491 Helianthus annuus HOM05D007902 ORTHO05D009839 4.1e-26 122.5 153 44.4
Lsat_1_v5_gn_9_59200 Lactuca sativa HOM05D007902 ORTHO05D009839 4.1e-26 122.5 159 43.4
Gohir.A13G005700 Gossypium hirsutum HOM05D007902 ORTHO05D009839 6.9e-26 121.7 171 44.4
EL10Ac2g04265 Beta vulgaris HOM05D007902 ORTHO05D009839 9.0e-26 121.3 190 40.0
Gohir.D13G005400 Gossypium hirsutum HOM05D007902 ORTHO05D009839 2.0e-25 120.2 171 43.9
CANSAT56G3130 Cannabis sativa HOM05D007902 ORTHO05D009839 2.6e-25 119.8 187 41.2
Gorai.013G006100 Gossypium raimondii HOM05D007902 ORTHO05D009839 2.6e-25 119.8 197 41.1
SalBow5G2004 Salvia bowleyana HOM05D007902 ORTHO05D009839 3.4e-25 119.4 175 42.9
Hund13474 Selenicereus undatus HOM05D007902 ORTHO05D009839 3.4e-25 119.4 189 41.3
Ca_06023_v3 Cicer arietinum L. HOM05D007902 ORTHO05D009839 4.5e-25 119.0 171 43.3
TWI53G0910 Tripterygium wilfordii HOM05D007902 ORTHO05D009839 4.5e-25 119.0 153 50.3
BraA10t45132Z Brassica rapa HOM05D007902 ORTHO05D009839 1.3e-24 117.5 175 45.1
Sp6g37500 Schrenkiella parvula HOM05D007902 ORTHO05D009839 1.3e-24 117.5 171 43.9
C09p71380 Brassica napus HOM05D007902 ORTHO05D009839 3.8e-24 115.9 172 44.8
arahy.Tifrunner.gnm1.ann1.C7E7HV Arachis hypogaea HOM05D007902 ORTHO05D009839 5.0e-24 115.5 165 41.2
BcaC03g13156 Brassica carinata HOM05D007902 ORTHO05D009839 5.0e-24 115.5 172 45.3
arahy.Tifrunner.gnm1.ann1.0H4UJT Arachis hypogaea HOM05D007902 ORTHO05D009839 8.5e-24 114.8 165 41.2
BcaC06g32241 Brassica carinata HOM05D007902 ORTHO05D009839 8.5e-24 114.8 180 43.3
COL.COLO4_26867 Corchorus olitorius HOM05D005928 ORTHO05D007500 1.1e-23 114.4 156 47.4
BcaB05g21722 Brassica carinata HOM05D007902 ORTHO05D009839 7.2e-23 111.7 175 43.4
Aqoxy4G02352 Aquilegia oxysepala HOM05D007902 ORTHO05D009839 1.2e-22 110.9 190 38.4
BraA02t04842Z Brassica rapa HOM05D007902 ORTHO05D009839 1.6e-22 110.5 170 43.5
C02p02280 Brassica napus HOM05D007902 ORTHO05D009839 2.7e-22 109.8 172 44.2
AT5G05330 Arabidopsis thaliana HOM05D007902 ORTHO05D009839 4.6e-22 109.0 177 40.7
BolC9t59901H Brassica oleracea HOM05D007902 ORTHO05D009839 1.0e-21 107.8 171 42.7
PGR142G4074 Punica granatum HOM05D007902 ORTHO05D009839 1.8e-21 107.1 195 37.9
CAN.G591.5 Capsicum annuum HOM05D007902 ORTHO05D009839 3.0e-21 106.3 172 41.3
CARHR207920 Cardamine hirsuta HOM05D007902 ORTHO05D009839 3.0e-21 106.3 166 41.0
Sopen06g015820 Solanum pennellii HOM05D007902 ORTHO05D009839 6.7e-21 105.1 153 44.4
AL6G15200 Arabidopsis lyrata HOM05D007902 ORTHO05D009839 1.5e-20 104.0 177 40.1
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 1.5e-20 104.0 202 36.6
unitig_52.g16781 Utricularia gibba HOM05D007902 ORTHO05D009839 3.3e-20 102.8 160 38.8
Atru.chr12.150 Acer truncatum HOM05D005928 ORTHO05D007500 4.3e-20 102.4 172 38.4
Carub.0006s0425 Capsella rubella HOM05D007902 ORTHO05D009839 1.6e-19 100.5 167 39.5
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 3.7e-19 99.4 145 42.1
Nitab4.5_0002713g0030 Nicotiana tabacum HOM05D007902 ORTHO05D009839 3.1e-18 96.3 149 44.3
Thhalv10014946m.g Eutrema salsugineum HOM05D007902 ORTHO05D009839 4.1e-18 95.9 138 42.0
BolC2t06195H Brassica oleracea HOM05D007902 ORTHO05D009839 5.9e-17 92.0 171 40.4
Psat1g014880 Pisum sativum HOM05D007902 ORTHO05D009839 7.7e-17 91.7 149 38.3
Medtr0191s0020 Medicago truncatula HOM05D007902 ORTHO05D009839 2.9e-16 89.7 152 38.8
Oeu054429.1 Olea europaea HOM05D007902 ORTHO05D009839 2.9e-16 89.7 138 38.4
PSO017G6410 Papaver somniferum HOM05D007902 ORTHO05D009839 3.8e-16 89.4 170 37.6
Nitab4.5_0000263g0270 Nicotiana tabacum HOM05D007902 ORTHO05D009839 1.9e-15 87.0 148 39.9
Thecc.10G175100 Theobroma cacao HOM05D007902 ORTHO05D009839 1.6e-14 84.0 171 36.8
PGSC0003DMG400029078 Solanum tuberosum HOM05D007902 ORTHO05D009839 3.9e-13 79.3 113 40.7
TAR623G0840 Trochodendron aralioides HOM05D007902 ORTHO05D009839 3.9e-13 79.3 54 66.7
LjContig00357g0001230 Lotus japonicus HOM05D007902 ORTHO05D009839 2.0e-12 77.0 150 36.7
Sc10g0002880 Simmondsia chinensis HOM05D007902 ORTHO05D009839 2.0e-12 77.0 81 54.3
PSO407G0011 Papaver somniferum HOM05D007902 ORTHO05D009839 4.4e-12 75.9 154 36.4
Dinv02932 Davidia involucrata HOM05D000727 ORTHO05D000541 5.3e-10 68.9 179 30.2
HanXRQChr17g0540661 Helianthus annuus HOM05D000727 ORTHO05D000541 9.1e-10 68.2 182 29.7
Duzib132G0609 Durio zibethinus HOM05D000727 ORTHO05D000541 2.6e-09 66.6 181 29.8
CDE07G0481 Ceratophyllum demersum HOM05D007902 ORTHO05D009839 5.9e-09 65.5 121 34.7
COL.COLO4_08802 Corchorus olitorius HOM05D000576 ORTHO05D000368 7.7e-09 65.1 59 59.3
Thecc.02G153200 Theobroma cacao HOM05D000727 ORTHO05D000541 1.3e-08 64.3 183 28.4
Lj1C1068T20 Lonicera japonica HOM05D007902 ORTHO05D009839 1.7e-08 63.9 74 44.6
Os08g0101100 Oryza sativa ssp. japonica HOM05D000727 ORTHO05D000541 2.2e-08 63.5 144 30.6
Duzib248G1122 Durio zibethinus HOM05D000727 ORTHO05D000541 2.9e-08 63.2 173 29.5
Peaxi162Scf00329g00121 Petunia axillaris HOM05D000727 ORTHO05D000541 3.8e-08 62.8 143 32.9
Hma1.2p1_0513F.1_g169510 Hydrangea macrophylla HOM05D000727 ORTHO05D000541 5.0e-08 62.4 182 30.8
Lj1A965T42 Lonicera japonica HOM05D007902 ORTHO05D009839 6.5e-08 62.0 73 43.8
Lalb_Chr17g0347071 Lupinus albus HOM05D007902 ORTHO05D009839 1.1e-07 61.2 91 39.6
SGA_v2.0_scaffold127G33972 Striga asiatica HOM05D000727 ORTHO05D000541 1.1e-07 61.2 170 29.4
ECA246G0005 Erigeron canadensis HOM05D000727 ORTHO05D000541 1.4e-07 60.8 185 28.6
AUR62032906 Chenopodium quinoa HOM05D000727 ORTHO05D000541 5.5e-07 58.9 191 25.7
MBI03_g40382_MAGBIO Magnolia biondii HOM05D034203 ORTHO05D009839 5.5e-07 58.9 74 39.2
CsaV3_5G021890 Cucumis sativus L. HOM05D000727 ORTHO05D000541 7.2e-07 58.5 175 28.6
AUR62012352 Chenopodium quinoa HOM05D038520 ORTHO05D009839 1.2e-06 57.8 151 31.8
AUR62017747 Chenopodium quinoa HOM05D000727 ORTHO05D000541 1.6e-06 57.4 191 25.7
Hund09512 Selenicereus undatus HOM05D000727 ORTHO05D000541 2.7e-06 56.6 182 26.9
MSTRG.13668 Avicennia marina HOM05D000727 ORTHO05D000541 3.6e-06 56.2 185 27.0
Gorai.008G147700 Gossypium raimondii HOM05D000727 ORTHO05D000541 3.6e-06 56.2 195 28.2
Cc11_g04510 Coffea canephora HOM05D000727 ORTHO05D000541 6.1e-06 55.5 162 27.8
SalBow2G1580 Salvia bowleyana HOM05D000727 ORTHO05D000541 6.1e-06 55.5 162 27.2
Sc25g0001400 Simmondsia chinensis HOM05D000727 ORTHO05D000541 7.9e-06 55.1 190 26.3


User provided reference genes

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