Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1229300 Malus domestica HOM05D002744 ORTHO05D008989 3.4e-107 391.7 204 100.0
MD01G1161400 Malus domestica HOM05D002744 ORTHO05D008989 4.9e-98 361.3 202 92.6
RcHm_v2.0_Chr1g0371481 Rosa chinensis HOM05D002744 ORTHO05D008989 2.1e-85 319.3 200 82.0
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.9e-82 308.9 200 76.5
FvH4_7g25501 Fragaria vesca HOM05D002744 ORTHO05D008989 8.4e-82 307.4 200 76.5
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.9e-81 306.2 200 76.0
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.6e-80 303.1 200 75.5
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 6.4e-74 281.2 222 66.2
Ciclev10032836m.g Citrus clementina HOM05D002744 ORTHO05D008989 2.4e-73 279.3 194 73.7
GSVIVG01032723001 Vitis vinifera HOM05D002744 ORTHO05D008989 7.1e-73 277.7 194 74.2
Dinv21809 Davidia involucrata HOM05D002744 ORTHO05D008989 4.3e-70 268.5 192 74.0
CiPaw.02G197300 Carya illinoinensis HOM05D002744 ORTHO05D008989 2.1e-69 266.2 191 71.2
QL08p064284 Quercus lobata HOM05D002744 ORTHO05D008989 1.2e-67 260.4 191 72.3
Thecc.10G007100 Theobroma cacao HOM05D002744 ORTHO05D008989 9.9e-67 257.3 191 72.3
Rhsim09G0182800 Rhododendron simsii HOM05D002744 ORTHO05D008989 1.3e-66 256.9 192 71.9
Haze_17321 Corylus avellana HOM05D002744 ORTHO05D008989 2.9e-66 255.8 191 70.2
CANSAT56G2966 Cannabis sativa HOM05D002744 ORTHO05D008989 4.9e-66 255.0 194 67.0
Cc02_g05720 Coffea canephora HOM05D002744 ORTHO05D008989 8.4e-66 254.2 191 71.2
Actinidia00986 Actinidia chinensis HOM05D002744 ORTHO05D008989 1.4e-65 253.4 187 73.3
PGR142G3983 Punica granatum HOM05D002744 ORTHO05D008989 1.9e-65 253.1 191 70.7
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 2.4e-65 252.7 169 74.6
arahy.Tifrunner.gnm1.ann1.HIE7A8 Arachis hypogaea HOM05D002744 ORTHO05D008989 7.1e-65 251.1 191 67.0
CsaV3_5G010720 Cucumis sativus L. HOM05D002744 ORTHO05D008989 7.1e-65 251.1 191 68.6
Glyma.11G234700 Glycine max HOM05D002744 ORTHO05D008989 7.1e-65 251.1 191 69.6
Gohir.D04G071200 Gossypium hirsutum HOM05D002744 ORTHO05D008989 7.1e-65 251.1 169 74.6
Eucgr.G03110 Eucalyptus grandis HOM05D002744 ORTHO05D008989 1.2e-64 250.4 191 69.6
Glyma.18G022300 Glycine max HOM05D002744 ORTHO05D008989 2.1e-64 249.6 194 68.6
Hma1.2p1_1240F.1_g269640 Hydrangea macrophylla HOM05D002744 ORTHO05D008989 2.7e-64 249.2 156 81.4
TWI38G2197 Tripterygium wilfordii HOM05D002744 ORTHO05D008989 4.6e-64 248.4 190 67.4
Manes.10G008400 Manihot esculenta HOM05D002744 ORTHO05D008989 1.3e-63 246.9 191 69.6
Sed0024728 Sechium edule HOM05D002744 ORTHO05D008989 1.3e-63 246.9 191 67.5
Gohir.A05G332500 Gossypium hirsutum HOM05D002744 ORTHO05D008989 3.0e-63 245.7 171 73.7
EL10Ac2g04293 Beta vulgaris HOM05D002744 ORTHO05D008989 6.6e-63 244.6 190 69.5
Nn2g11068 Nelumbo nucifera HOM05D002744 ORTHO05D008989 6.6e-63 244.6 188 70.7
Duzib114G0765 Durio zibethinus HOM05D002744 ORTHO05D008989 8.7e-63 244.2 193 69.9
arahy.Tifrunner.gnm1.ann1.N80L0Z Arachis hypogaea HOM05D002744 ORTHO05D008989 1.5e-62 243.4 190 65.3
arahy.Tifrunner.gnm1.ann1.B5C26Y Arachis hypogaea HOM05D002744 ORTHO05D008989 1.9e-62 243.0 190 65.3
Phvul.001G248100 Phaseolus vulgaris HOM05D002744 ORTHO05D008989 1.9e-62 243.0 194 64.4
Peaxi162Scf00284g00123 Petunia axillaris HOM05D002744 ORTHO05D008989 3.3e-62 242.3 192 66.7
Hund13513 Selenicereus undatus HOM05D002744 ORTHO05D008989 5.6e-62 241.5 191 66.0
MSTRG.12212 Avicennia marina HOM05D002744 ORTHO05D008989 9.6e-62 240.7 178 70.8
Migut.A01076 Erythranthe guttata HOM05D002744 ORTHO05D008989 9.6e-62 240.7 191 66.5
Gorai.012G080100 Gossypium raimondii HOM05D002744 ORTHO05D008989 6.2e-61 238.0 181 69.6
Nitab4.5_0000928g0050 Nicotiana tabacum HOM05D002744 ORTHO05D008989 8.1e-61 237.7 191 67.0
Potri.008G075600 Populus trichocarpa HOM05D002744 ORTHO05D008989 4.0e-60 235.3 183 68.9
AUR62022976 Chenopodium quinoa HOM05D002744 ORTHO05D008989 5.3e-60 235.0 188 69.1
Sopen02g021690 Solanum pennellii HOM05D002744 ORTHO05D008989 9.0e-60 234.2 191 63.9
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.5e-59 233.4 156 76.9
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 3.4e-59 232.3 166 69.9
Atru.BG.256.p Acer truncatum HOM05D002744 ORTHO05D008989 4.5e-59 231.9 154 77.3
DCAR_011891 Daucus carota HOM05D002744 ORTHO05D008989 5.8e-59 231.5 152 76.3
HanXRQChr17g0560791 Helianthus annuus HOM05D002744 ORTHO05D008989 5.8e-59 231.5 192 64.6
Prupe.2G259500 Prunus persica HOM05D002744 ORTHO05D008989 1.7e-58 229.9 137 87.6
Lju41C22T0 Lonicera japonica HOM05D002744 ORTHO05D008989 2.9e-58 229.2 156 77.6
Lj6g0011522 Lotus japonicus HOM05D002744 ORTHO05D008989 3.8e-58 228.8 193 63.7
AUR62012334 Chenopodium quinoa HOM05D002744 ORTHO05D008989 4.9e-58 228.4 153 76.5
Lj8C58T1 Lonicera japonica HOM05D002744 ORTHO05D008989 8.4e-58 227.6 156 76.9
PSO017G6389 Papaver somniferum HOM05D002744 ORTHO05D008989 8.4e-58 227.6 198 60.6
vmacro09984 Vaccinium macrocarpon HOM05D002744 ORTHO05D008989 1.4e-57 226.9 224 58.5
Nitab4.5_0000263g0100 Nicotiana tabacum HOM05D002744 ORTHO05D008989 2.4e-57 226.1 172 68.6
Sabra08G0056200 Salix brachista HOM05D002744 ORTHO05D008989 2.4e-57 226.1 193 65.3
BcaB08g34630 Brassica carinata HOM05D002744 ORTHO05D008989 3.2e-57 225.7 187 62.6
Carub.0005s2299 Capsella rubella HOM05D002744 ORTHO05D008989 3.2e-57 225.7 187 61.5
ECA233G4001 Erigeron canadensis HOM05D002744 ORTHO05D008989 3.2e-57 225.7 195 62.6
Thhalv10006252m.g Eutrema salsugineum HOM05D002744 ORTHO05D008989 3.2e-57 225.7 187 63.1
PSO170G0776 Papaver somniferum HOM05D002744 ORTHO05D008989 3.2e-57 225.7 198 60.1
Sp5g06290 Schrenkiella parvula HOM05D002744 ORTHO05D008989 5.5e-57 224.9 187 62.6
Ca_15179_v3 Cicer arietinum L. HOM05D002744 ORTHO05D008989 7.1e-57 224.6 191 62.3
THA.LOC104824346 Tarenaya hassleriana HOM05D002744 ORTHO05D008989 1.6e-56 223.4 187 61.5
Medtr3g072120 Medicago truncatula HOM05D002744 ORTHO05D008989 2.1e-56 223.0 192 63.5
AL5G37530 Arabidopsis lyrata HOM05D002744 ORTHO05D008989 2.7e-56 222.6 187 61.0
Lalb_Chr08g0231351 Lupinus albus HOM05D002744 ORTHO05D008989 2.7e-56 222.6 191 61.8
TPR.G28641 Trifolium pratense HOM05D002744 ORTHO05D008989 3.5e-56 222.2 191 61.8
SGA_v2.0_scaffold36G14267 Striga asiatica HOM05D002744 ORTHO05D008989 3.9e-55 218.8 175 69.7
SalBow3G4547 Salvia bowleyana HOM05D002744 ORTHO05D008989 6.7e-55 218.0 181 63.5
VMungo1383G3724 Vigna mungo HOM05D002744 ORTHO05D008989 1.5e-54 216.9 159 67.3
A09p49190 Brassica napus HOM05D002744 ORTHO05D008989 1.9e-54 216.5 188 60.6
Lsat_1_v5_gn_8_13401 Lactuca sativa HOM05D002744 ORTHO05D008989 1.9e-54 216.5 152 71.1
CARHR166360 Cardamine hirsuta HOM05D002744 ORTHO05D008989 2.5e-54 216.1 162 64.8
BraA09t40372Z Brassica rapa HOM05D002744 ORTHO05D008989 7.4e-54 214.5 196 58.7
AT3G56210 Arabidopsis thaliana HOM05D002744 ORTHO05D008989 2.8e-53 212.6 186 60.2
Os03g0665800 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D008989 3.7e-53 212.2 164 65.2
Oeu026180.1 Olea europaea HOM05D002744 ORTHO05D008989 3.1e-52 209.1 137 78.1
HPP92_013966 Vanilla planifolia HOM05D002744 ORTHO05D008989 9.0e-52 207.6 176 60.8
TAR369G0133 Trochodendron aralioides HOM05D000826 ORTHO05D001831 6.5e-50 201.4 150 70.7
ATR0681G046 Amborella trichopoda HOM05D000826 ORTHO05D008989 1.0e-47 194.1 189 56.6
ClCG07G004800 Citrullus lanatus HOM05D002744 ORTHO05D008989 2.3e-47 193.0 191 58.6
Hma1.2p1_1240F.1_g269630 Hydrangea macrophylla HOM05D002744 ORTHO05D008989 3.0e-47 192.6 133 76.7
unitig_32.g11706 Utricularia gibba HOM05D002744 ORTHO05D008989 3.9e-47 192.2 161 60.9
unitig_33.g30211 Utricularia gibba HOM05D002744 ORTHO05D008989 3.9e-47 192.2 161 60.9
C08p31530 Brassica napus HOM05D002744 ORTHO05D008989 6.7e-47 191.4 152 67.1
BcaC07g39936 Brassica carinata HOM05D002744 ORTHO05D008989 1.5e-46 190.3 149 67.1
EL10Ac2g04295 Beta vulgaris HOM05D002744 ORTHO05D008989 4.8e-45 185.3 146 69.2
Lj1A963T49 Lonicera japonica HOM05D002744 ORTHO05D008989 1.2e-43 180.6 111 82.0
BcaB01g00016 Brassica carinata HOM05D002744 ORTHO05D008989 2.2e-42 176.4 152 60.5
SEGI_09795 Sequoiadendron giganteum HOM05D002744 ORTHO05D008989 1.9e-41 173.3 170 55.3
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 2.5e-41 172.9 121 70.2
PGSC0003DMG400010239 Solanum tuberosum HOM05D002744 ORTHO05D008989 2.1e-40 169.9 121 73.6
TAR623G0678 Trochodendron aralioides HOM05D002744 ORTHO05D008989 3.6e-40 169.1 117 76.1
CDE02G4284 Ceratophyllum demersum HOM05D002744 ORTHO05D008989 1.0e-39 167.5 119 69.7
Solyc02g076790.4 Solanum lycopersicum HOM05D002744 ORTHO05D008989 1.8e-39 166.8 121 71.1
MELO3C020107.2 Cucumis melo HOM05D002744 ORTHO05D008989 6.7e-39 164.9 191 49.7
BolC8t50775H Brassica oleracea HOM05D002744 ORTHO05D008989 5.7e-38 161.8 187 47.6
BcaB01g00017 Brassica carinata HOM05D002744 ORTHO05D008989 1.6e-37 160.2 167 54.5
Aa31LG10G11120 Aethionema arabicum HOM05D002744 ORTHO05D008989 6.3e-37 158.3 117 66.7
Gohir.A10G240750 Gossypium hirsutum HOM05D002744 ORTHO05D008989 1.9e-33 146.7 120 65.0
Hma1.2p1_0322F.1_g124790 Hydrangea macrophylla HOM05D002744 ORTHO05D008989 1.1e-30 137.5 152 50.0
SEGI_38813 Sequoiadendron giganteum HOM05D002744 ORTHO05D008989 8.2e-29 131.3 107 60.7
Mapoly0001s0439 Marchantia polymorpha HOM05D002744 ORTHO05D008989 5.3e-28 128.6 159 46.5
Psat5g130160 Pisum sativum HOM05D002744 ORTHO05D008989 1.0e-23 114.4 105 59.0
Sc10g0002800 Simmondsia chinensis HOM05D002744 ORTHO05D008989 3.0e-23 112.8 134 51.5
CDE01G0559 Ceratophyllum demersum HOM05D002744 ORTHO05D008989 2.6e-22 109.8 141 46.1
Pp3c8_1670 Physcomitrium patens HOM05D002744 ORTHO05D008989 2.1e-16 90.1 98 45.9
SMO147G0318 Selaginella moellendorffii HOM05D002744 ORTHO05D008989 2.8e-13 79.7 145 34.5
C06p23580 Brassica napus HOM05D002744 ORTHO05D008989 1.9e-09 67.0 47 63.8
CAN.G118.19 Capsicum annuum HOM05D002744 ORTHO05D008989 4.7e-08 62.4 46 65.2
Psat5g125520 Pisum sativum HOM05D002744 ORTHO05D008989 1.8e-07 60.5 59 49.2


User provided reference genes

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