Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1226900 Malus domestica HOM05D006653 ORTHO05D008346 7.5e-166 587.0 279 100.0
MD01G1158200 Malus domestica HOM05D006653 ORTHO05D008346 1.2e-147 526.6 279 90.7
Prupe.2G256500 Prunus persica HOM05D006653 ORTHO05D008346 9.5e-137 490.3 280 82.9
FAN06G1821 Fragaria x ananassa HOM05D006653 ORTHO05D008346 3.4e-118 428.7 280 73.2
FAN01G0493 Fragaria x ananassa HOM05D006653 ORTHO05D008346 5.1e-114 414.8 280 70.7
Cfa001271 Carpinus fangiana HOM05D006653 ORTHO05D008346 1.1e-108 397.1 284 66.9
QL08p063830 Quercus lobata HOM05D006653 ORTHO05D008346 8.7e-106 387.5 275 67.3
CiPaw.01G301500 Carya illinoinensis HOM05D006653 ORTHO05D008346 2.4e-103 379.4 277 65.7
FAN03G1392 Fragaria x ananassa HOM05D006653 ORTHO05D008346 9.0e-103 377.5 280 66.1
RcHm_v2.0_Chr1g0371041 Rosa chinensis HOM05D006653 ORTHO05D008346 1.5e-102 376.7 279 65.6
FAN10G0035 Fragaria x ananassa HOM05D006653 ORTHO05D008346 2.6e-102 375.9 273 66.3
Lj6g0008682 Lotus japonicus HOM05D006653 ORTHO05D008346 5.8e-102 374.8 257 66.5
Potri.008G073200 Populus trichocarpa HOM05D006653 ORTHO05D008346 9.9e-102 374.0 285 64.6
Haze_17274 Corylus avellana HOM05D006653 ORTHO05D008346 1.3e-101 373.6 316 60.4
Actinidia29724 Actinidia chinensis HOM05D006653 ORTHO05D008346 4.9e-101 371.7 276 65.2
Haze_17283 Corylus avellana HOM05D006653 ORTHO05D008346 6.4e-101 371.3 316 60.1
Glyma.18G024100 Glycine max HOM05D006653 ORTHO05D008346 1.9e-100 369.8 257 66.1
Nn2g13243 Nelumbo nucifera HOM05D006653 ORTHO05D008346 1.9e-100 369.8 273 65.2
Medtr3g071640 Medicago truncatula HOM05D006653 ORTHO05D008346 4.2e-100 368.6 255 65.1
Hma1.2p1_1013F.1_g247760 Hydrangea macrophylla HOM05D006653 ORTHO05D008346 5.5e-100 368.2 265 65.7
TWI53G0670 Tripterygium wilfordii HOM05D006653 ORTHO05D008346 9.3e-100 367.5 275 65.5
PSO339G4279 Papaver somniferum HOM05D006653 ORTHO05D008346 7.9e-99 364.4 269 63.6
Lalb_Chr23g0277111 Lupinus albus HOM05D006653 ORTHO05D008346 1.0e-98 364.0 253 65.6
PSO801G0584 Papaver somniferum HOM05D006653 ORTHO05D008346 1.3e-98 363.6 269 63.2
CSS0019013 Camellia sinensis var. sinensis HOM05D006653 ORTHO05D008346 1.8e-98 363.2 277 62.1
GSVIVG01032749001 Vitis vinifera HOM05D006653 ORTHO05D008346 2.3e-98 362.8 272 65.8
Eucgr.G03091 Eucalyptus grandis HOM05D006653 ORTHO05D008346 3.0e-98 362.5 255 67.1
Phvul.001G246100 Phaseolus vulgaris HOM05D006653 ORTHO05D008346 3.0e-98 362.5 276 60.9
Ca_15156_v3 Cicer arietinum L. HOM05D006653 ORTHO05D008346 9.6e-97 357.5 274 60.9
Thecc.10G010700 Theobroma cacao HOM05D006653 ORTHO05D008346 2.1e-96 356.3 278 62.2
CsaV3_5G010530 Cucumis sativus L. HOM05D006653 ORTHO05D008346 3.7e-96 355.5 279 60.6
Aqoxy2G00794 Aquilegia oxysepala HOM05D006653 ORTHO05D008346 4.8e-96 355.1 281 59.4
Duzib106G1369 Durio zibethinus HOM05D006653 ORTHO05D008346 6.2e-96 354.8 272 62.5
Ciclev10032369m.g Citrus clementina HOM05D006653 ORTHO05D008346 4.0e-95 352.1 266 60.9
Cc02_g06010 Coffea canephora HOM05D006653 ORTHO05D008346 4.5e-94 348.6 278 60.4
Nitab4.5_0003391g0090 Nicotiana tabacum HOM05D006653 ORTHO05D008346 2.9e-93 345.9 269 61.0
Sed0010106 Sechium edule HOM05D006653 ORTHO05D008346 2.9e-93 345.9 282 59.2
TAR633G2597 Trochodendron aralioides HOM05D006653 ORTHO05D008346 2.9e-93 345.9 264 63.3
Nitab4.5_0000789g0140 Nicotiana tabacum HOM05D006653 ORTHO05D008346 4.9e-93 345.1 271 60.9
Migut.F00634 Erythranthe guttata HOM05D006653 ORTHO05D008346 4.2e-92 342.0 275 61.5
Gorai.011G290500 Gossypium raimondii HOM05D006653 ORTHO05D008346 7.1e-92 341.3 264 60.6
CAN.G203.2 Capsicum annuum HOM05D006653 ORTHO05D008346 2.1e-91 339.7 259 59.8
Oeu001415.1 Olea europaea HOM05D006653 ORTHO05D008346 2.1e-91 339.7 279 59.5
Sabra08G0054400 Salix brachista HOM05D006653 ORTHO05D008346 2.1e-91 339.7 342 53.5
Peaxi162Scf01149g00326 Petunia axillaris HOM05D006653 ORTHO05D008346 6.0e-91 338.2 272 58.8
THA.LOC104810122 Tarenaya hassleriana HOM05D006653 ORTHO05D008346 6.0e-91 338.2 269 59.9
Solyc05g052460.3 Solanum lycopersicum HOM05D006653 ORTHO05D008346 1.3e-90 337.0 271 59.8
Sopen05g030990 Solanum pennellii HOM05D006653 ORTHO05D008346 3.0e-90 335.9 272 59.9
HanXRQChr17g0560871 Helianthus annuus HOM05D006653 ORTHO05D008346 4.3e-89 332.0 278 56.1
MSTRG.27303 Avicennia marina HOM05D006653 ORTHO05D008346 6.3e-88 328.2 275 59.6
Lsat_1_v5_gn_8_12960 Lactuca sativa HOM05D006653 ORTHO05D008346 8.2e-88 327.8 266 56.8
SalBow3G2417 Salvia bowleyana HOM05D006653 ORTHO05D008346 1.8e-87 326.6 273 59.0
SGA_v2.0_scaffold60G20961 Striga asiatica HOM05D006653 ORTHO05D008346 2.4e-87 326.2 274 59.5
vmacro06946 Vaccinium macrocarpon HOM05D006653 ORTHO05D008346 3.1e-87 325.9 298 56.7
arahy.Tifrunner.gnm1.ann1.CC0JZ8 Arachis hypogaea HOM05D006653 ORTHO05D008346 6.9e-87 324.7 329 48.6
TPR.G27742 Trifolium pratense HOM05D006653 ORTHO05D008346 9.0e-87 324.3 372 46.2
AL4G38130 Arabidopsis lyrata HOM05D006653 ORTHO05D008346 2.6e-86 322.8 273 57.1
Duzib114G1011 Durio zibethinus HOM05D006653 ORTHO05D008346 7.6e-86 321.2 278 58.3
Thhalv10017062m.g Eutrema salsugineum HOM05D006653 ORTHO05D008346 1.0e-85 320.9 273 57.1
FvH4_7g25140 Fragaria vesca HOM05D006653 ORTHO05D008346 2.2e-85 319.7 202 75.2
Aa31LG5G19250 Aethionema arabicum HOM05D006653 ORTHO05D008346 2.9e-85 319.3 271 58.3
EL10Ac2g04898 Beta vulgaris HOM05D006653 ORTHO05D008346 2.9e-85 319.3 268 55.6
Carub.0004s2256 Capsella rubella HOM05D006653 ORTHO05D008346 5.0e-85 318.5 273 57.9
Rhsim03G0147300 Rhododendron simsii HOM05D006653 ORTHO05D008346 8.5e-85 317.8 336 50.6
Sp4g22650 Schrenkiella parvula HOM05D006653 ORTHO05D008346 1.4e-84 317.0 274 55.1
Sc10g0002660 Simmondsia chinensis HOM05D006653 ORTHO05D008346 1.9e-84 316.6 274 55.1
PGR142G3637 Punica granatum HOM05D006653 ORTHO05D008346 4.2e-84 315.5 247 59.9
SalBow3G2982 Salvia bowleyana HOM05D006653 ORTHO05D008346 1.2e-83 313.9 295 54.6
BcaC02g12146 Brassica carinata HOM05D006653 ORTHO05D008346 6.1e-83 311.6 271 56.1
ECA233G2660 Erigeron canadensis HOM05D006653 ORTHO05D008346 1.0e-82 310.8 258 56.6
Dinv21781 Davidia involucrata HOM05D006653 ORTHO05D008346 5.1e-82 308.5 221 67.9
C04p07070 Brassica napus HOM05D006653 ORTHO05D008346 1.5e-81 307.0 272 55.9
ATR0174G059 Amborella trichopoda HOM05D006653 ORTHO05D008346 4.3e-81 305.4 261 54.4
Lsat_1_v5_gn_9_60841 Lactuca sativa HOM05D006653 ORTHO05D008346 4.3e-81 305.4 268 54.1
Ah.10g036190 Amaranthus hybridus HOM05D006653 ORTHO05D008346 2.8e-80 302.8 244 55.7
HanXRQChr09g0253161 Helianthus annuus HOM05D006653 ORTHO05D008346 2.4e-79 299.7 257 54.9
BcaB02g09031 Brassica carinata HOM05D006653 ORTHO05D008346 6.9e-79 298.1 272 53.3
A05p06130 Brassica napus HOM05D006653 ORTHO05D008346 6.9e-79 298.1 272 54.0
ClCG07G004590 Citrullus lanatus HOM05D006653 ORTHO05D008346 8.5e-77 291.2 275 55.6
ECA232G4592 Erigeron canadensis HOM05D006653 ORTHO05D008346 4.2e-76 288.9 309 47.6
CANSAT56G3810 Cannabis sativa HOM05D006653 ORTHO05D008346 1.0e-74 284.3 207 67.1
MELO3C034224.2 Cucumis melo HOM05D006653 ORTHO05D008346 1.1e-73 280.8 207 64.7
Psat5g130600 Pisum sativum HOM05D006653 ORTHO05D008346 1.1e-73 280.8 202 63.9
HPP92_000719 Vanilla planifolia HOM05D006653 ORTHO05D008346 1.1e-73 280.8 235 55.7
AUR62022948 Chenopodium quinoa HOM05D006653 ORTHO05D008346 2.0e-73 280.0 256 54.7
Hund13903 Selenicereus undatus HOM05D006653 ORTHO05D008346 7.4e-73 278.1 235 54.5
arahy.Tifrunner.gnm1.ann1.WF4WBF Arachis hypogaea HOM05D006653 ORTHO05D008346 9.7e-73 277.7 280 51.1
BolC4t22332H Brassica oleracea HOM05D006653 ORTHO05D008346 9.7e-73 277.7 253 54.5
Glyma.11G233000 Glycine max HOM05D006653 ORTHO05D008346 1.7e-72 276.9 210 63.8
VMungo1383G0363 Vigna mungo HOM05D006653 ORTHO05D008346 3.7e-72 275.8 329 47.7
Manes.10G008100 Manihot esculenta HOM05D006653 ORTHO05D008346 4.1e-71 272.3 207 65.7
CARHR135400 Cardamine hirsuta HOM05D006653 ORTHO05D008346 1.0e-69 267.7 219 58.9
BraA05t19578Z Brassica rapa HOM05D006653 ORTHO05D008346 1.7e-69 266.9 269 50.2
DCAR_011848 Daucus carota HOM05D006653 ORTHO05D008346 1.4e-68 263.8 202 63.4
Atru.chr12.104 Acer truncatum HOM05D006653 ORTHO05D008346 4.2e-68 262.3 193 65.8
AT2G40316 Arabidopsis thaliana HOM05D006653 ORTHO05D008346 6.7e-66 255.0 210 58.1
PGSC0003DMG400027171 Solanum tuberosum HOM05D006653 ORTHO05D008346 1.5e-65 253.8 271 48.7
Gohir.D10G250100 Gossypium hirsutum HOM05D006653 ORTHO05D008346 4.4e-65 252.3 200 59.0
Gohir.A10G238200 Gossypium hirsutum HOM05D006653 ORTHO05D008346 1.3e-64 250.8 200 58.5
Lj8C62G17 Lonicera japonica HOM05D006653 ORTHO05D008346 3.5e-62 242.7 186 65.1
PGR142G1681 Punica granatum HOM05D006653 ORTHO05D008346 3.1e-55 219.5 183 57.9
AUR62012309 Chenopodium quinoa HOM05D000043 ORTHO05D003538 2.0e-54 216.9 224 49.6
Zm00001eb013720 Zea mays HOM05D006653 ORTHO05D008346 1.7e-53 213.8 188 54.3
MBI03_g37948_MAGBIO Magnolia biondii HOM05D006653 ORTHO05D008346 3.0e-50 203.0 354 35.3
Pp3c11_970 Physcomitrium patens HOM05D006653 ORTHO05D008346 3.7e-48 196.1 237 41.8
CDE06G2038 Ceratophyllum demersum HOM05D006653 ORTHO05D008346 3.8e-45 186.0 201 48.8
Pp3c2_28750 Physcomitrium patens HOM05D006653 ORTHO05D008346 3.8e-45 186.0 265 38.1
Mapoly0095s0003 Marchantia polymorpha HOM05D006653 ORTHO05D008346 1.9e-44 183.7 254 38.6
COL.COLO4_25792 Corchorus olitorius HOM05D006653 ORTHO05D008346 2.3e-42 176.8 182 52.7
Dinv10585 Davidia involucrata HOM05D006653 ORTHO05D008346 3.4e-41 172.9 140 62.9
AagrBONN_evm.TU.Sc2ySwM_362.1315 Anthoceros agrestis HOM05D006653 ORTHO05D008346 7.8e-30 135.2 187 35.3
HanXRQChr08g0221951 Helianthus annuus HOM05D006653 ORTHO05D008346 2.8e-27 126.7 170 41.2
Cpa.g.sc19.127 Carica papaya HOM05D006653 ORTHO05D008346 4.7e-27 125.9 122 51.6
Manes.07G134901 Manihot esculenta HOM05D006653 ORTHO05D008346 2.9e-24 116.7 152 47.4
SMO203G0248 Selaginella moellendorffii HOM05D006653 ORTHO05D008346 1.0e-21 108.2 179 33.5
SHI28813 Sapria himalayana HOM05D006653 ORTHO05D008346 8.1e-19 98.6 252 29.4
Manes.07G074522 Manihot esculenta HOM05D006653 ORTHO05D008346 6.8e-18 95.5 93 58.1
SEGI_38425 Sequoiadendron giganteum HOM05D006653 ORTHO05D008346 1.0e-13 81.6 78 39.7
Manes.04G030750 Manihot esculenta HOM05D006653 ORTHO05D008346 1.5e-09 67.8 55 56.4
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 1.2e-06 58.2 73 47.9


User provided reference genes

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