Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 2228.8 1213 100.0
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 2108.6 1228 94.6
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1999.9 1217 90.2
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1903.6 1218 86.3
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1850.9 1214 81.8
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1828.1 1231 80.4
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1814.7 1153 82.7
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1804.3 1161 81.9
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1798.9 1161 81.8
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1793.9 1231 79.3
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1665.2 1154 75.9
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1630.5 1216 72.9
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1608.6 1149 74.2
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1590.9 1172 71.8
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1582.0 1175 71.7
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1574.3 1218 69.5
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1573.1 1143 73.1
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1569.7 1216 69.5
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1567.7 1149 71.7
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1553.1 1149 71.6
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1552.3 1154 71.2
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1549.3 1142 72.9
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1549.3 1150 71.7
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1545.8 1148 71.1
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1542.3 1146 70.4
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1538.1 1144 71.7
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1537.7 1152 71.9
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1536.2 1219 68.4
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1534.2 1150 70.9
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1527.3 1216 68.8
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1525.0 1147 71.1
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1523.5 1140 69.8
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1520.4 1156 70.2
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1517.7 1142 70.7
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1514.6 1150 69.2
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1509.6 1154 69.1
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1498.4 1226 68.2
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1498.0 1142 69.5
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1497.3 1148 69.0
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1486.9 1215 69.2
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1486.1 1156 69.0
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1484.2 1145 69.6
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1477.2 1158 68.6
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1472.6 1150 69.3
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1460.3 1140 67.3
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1458.7 1157 68.4
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1453.7 1151 68.1
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1453.7 1151 68.1
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1453.3 1146 68.0
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1450.3 1149 67.8
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1446.4 1139 67.9
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1446.0 1216 64.2
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1443.7 1157 67.9
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1442.6 1139 67.5
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1441.0 1179 66.5
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1440.6 1157 68.5
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1439.5 1141 67.2
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1436.8 1351 59.7
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1434.9 1157 68.1
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 1432.5 1139 67.2
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1431.0 1139 67.2
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1430.2 1139 67.3
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1427.5 1139 67.3
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1419.1 1141 67.0
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1416.7 1156 66.1
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1413.3 1164 65.4
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1412.1 1217 63.2
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1412.1 1156 65.6
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1411.7 1217 63.4
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1410.2 1217 63.2
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1407.5 1156 65.8
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1404.4 1183 64.8
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1404.4 1183 64.8
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1401.7 1169 65.4
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1400.6 1183 64.6
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1400.2 1155 65.6
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1387.5 1229 60.9
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1383.2 1140 64.5
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1381.3 1142 64.5
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1379.8 1141 65.6
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1379.8 1222 63.6
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1379.0 1143 65.1
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1367.8 1118 65.0
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1366.7 1131 65.3
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1361.7 1158 64.0
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1359.7 1131 65.3
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1349.3 1172 62.9
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1342.8 1164 62.7
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1321.6 1070 67.0
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1303.1 1231 59.9
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1302.0 1086 65.3
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1262.3 1023 65.5
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 1211.8 1070 61.5
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1203.0 1066 61.4
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1202.2 1136 58.3
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1191.8 1123 57.9
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1184.9 1178 57.7
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1171.8 1121 58.7
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 0.0e+00 1165.6 832 75.5
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1151.0 1155 57.5
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1102.8 981 61.4
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 0.0e+00 1083.2 1142 55.3
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 8.3e-312 1074.3 1146 53.4
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.2e-307 1059.3 674 82.3
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 4.4e-295 1018.5 1187 52.1
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 8.6e-275 951.0 1100 51.3
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 4.2e-274 948.7 680 72.5
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 9.2e-269 931.0 701 70.6
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 4.6e-268 928.7 745 66.0
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 4.1e-261 905.6 943 54.4
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 7.6e-239 831.6 1216 43.1
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 9.9e-231 804.7 633 66.5
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 1.1e-226 791.2 636 66.8
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 1.1e-226 791.2 1217 41.2
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 2.1e-220 770.4 665 62.0
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.9e-214 750.0 1155 41.6
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 1.1e-210 738.0 594 67.2
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 4.8e-209 732.6 613 63.5
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 1.9e-205 720.7 689 59.4
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.6e-183 647.1 591 61.1
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 1.7e-182 644.4 1105 39.5
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 4.0e-171 606.7 519 62.6
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 2.3e-163 580.9 456 66.7
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 5.4e-160 569.7 455 67.0
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 8.6e-150 535.8 431 66.1
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 7.5e-138 496.1 1457 29.1
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.1e-136 489.6 1134 35.2
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 2.2e-129 468.0 312 78.5
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 1.3e-118 432.2 315 72.1
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 2.3e-118 431.4 323 70.3
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.3e-105 389.0 397 56.2
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 2.1e-100 371.7 422 50.9
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.0e-94 352.8 256 75.0
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 5.1e-94 350.5 311 62.1
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 1.5e-93 349.0 342 58.2
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 9.1e-75 286.6 293 51.9
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.0e-70 271.6 210 71.9
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.9e-70 271.2 208 72.6
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.0e-69 268.9 208 72.1
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 9.7e-69 266.5 241 59.3
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.3e-68 263.8 205 71.7
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 7.7e-66 256.9 262 54.2
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.0e-62 246.5 202 63.9
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 4.4e-61 241.1 202 67.8
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.8e-60 237.7 284 52.5
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.2e-54 217.6 134 81.3
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.4e-53 214.5 130 83.1
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 1.1e-51 209.9 180 58.9
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 1.4e-51 209.5 130 81.5
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 1.4e-51 209.5 127 82.7
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.8e-46 192.6 136 77.9
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.2e-45 189.9 181 55.8
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 1.7e-44 186.0 166 62.0
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-39 169.9 111 78.4
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 9.5e-32 143.7 106 67.9
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.7e-31 141.4 110 69.1
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 7.0e-27 127.5 227 41.4
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 4.4e-21 108.2 184 40.8
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.9e-20 105.5 64 81.2
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 1.1e-16 93.6 64 70.3
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 1.5e-16 93.2 57 82.5
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.6e-15 89.7 248 30.2
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 3.1e-14 85.5 128 42.2
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 9.2e-11 73.9 121 34.7
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 1.3e-09 70.1 74 51.4


User provided reference genes

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