Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 6.4e-246 853.6 420 100.0
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 3.1e-184 648.7 371 85.4
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 3.5e-175 618.6 369 81.3
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 2.7e-159 565.8 365 74.8
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.5e-159 565.5 385 73.2
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 2.4e-155 552.7 365 74.0
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.7e-153 546.6 368 72.3
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 2.4e-152 542.7 329 78.1
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 3.2e-152 542.3 379 71.8
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 9.2e-152 540.8 361 73.1
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 8.6e-150 534.3 367 71.4
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 9.6e-149 530.8 368 71.7
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.2e-148 530.4 398 68.8
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.8e-148 529.3 397 67.0
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 4.7e-148 528.5 330 75.5
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 4.7e-148 528.5 365 70.1
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 9.0e-147 524.2 390 69.0
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.4e-144 515.0 401 66.8
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 2.7e-143 512.7 373 67.0
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 3.5e-143 512.3 370 67.3
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.3e-142 510.4 505 57.0
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 8.7e-142 507.7 365 68.8
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 9.6e-141 504.2 367 67.3
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 2.1e-140 503.1 329 72.6
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.1e-140 503.1 370 66.8
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 2.8e-140 502.7 372 66.9
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 4.8e-140 501.9 373 68.4
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 4.8e-140 501.9 330 72.7
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 6.2e-140 501.5 370 66.5
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 6.9e-139 498.0 364 66.5
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 7.6e-138 494.6 328 71.6
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.4e-136 490.3 330 71.8
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 9.3e-136 487.6 364 66.2
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 2.7e-135 486.1 351 68.7
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 3.0e-134 482.6 334 69.5
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 6.7e-134 481.5 358 67.0
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 1.9e-133 479.9 365 64.9
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 1.3e-132 477.2 369 64.8
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 6.2e-132 474.9 357 64.7
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 6.2e-132 474.9 334 68.9
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.4e-131 473.8 329 69.6
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 2.4e-131 473.0 366 63.9
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 9.0e-131 471.1 328 69.2
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 5.8e-130 468.4 341 68.0
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 9.9e-130 467.6 329 67.5
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 1.7e-129 466.8 370 61.9
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 2.2e-129 466.5 337 69.1
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 2.9e-129 466.1 357 63.6
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 1.1e-128 464.2 340 65.3
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.4e-128 463.8 329 68.4
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 1.9e-128 463.4 330 66.1
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.4e-128 463.0 340 66.5
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 3.2e-128 462.6 330 67.0
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 3.2e-128 462.6 359 63.8
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 7.1e-128 461.5 357 63.0
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.2e-127 460.7 338 66.6
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 1.2e-127 460.7 328 68.9
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 2.7e-127 459.5 362 62.2
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 3.5e-127 459.1 359 62.1
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 3.5e-127 459.1 355 62.5
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 4.6e-127 458.8 330 66.4
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 6.0e-127 458.4 342 65.5
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 7.9e-127 458.0 346 63.3
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 1.0e-126 457.6 366 62.3
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 1.3e-126 457.2 330 66.4
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 1.8e-126 456.8 330 66.4
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 1.8e-126 456.8 342 65.2
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 2.3e-126 456.4 345 64.3
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 3.9e-126 455.7 348 64.4
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 6.7e-126 454.9 366 64.8
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 6.7e-126 454.9 331 64.4
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 8.7e-126 454.5 353 63.2
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 1.1e-125 454.1 333 66.7
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 1.1e-125 454.1 325 69.2
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 1.5e-125 453.8 360 62.8
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 1.5e-125 453.8 364 63.2
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 1.9e-125 453.4 330 66.7
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 1.9e-125 453.4 330 66.7
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 4.3e-125 452.2 370 61.6
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 9.6e-125 451.1 330 66.4
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 1.3e-124 450.7 330 65.5
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 1.6e-124 450.3 373 60.9
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 3.7e-124 449.1 348 63.2
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 4.8e-124 448.7 327 65.4
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 8.2e-124 448.0 381 59.6
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 8.2e-124 448.0 526 48.5
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 3.1e-123 446.0 346 61.3
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 5.3e-123 445.3 341 63.3
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 6.9e-123 444.9 368 63.6
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 9.0e-123 444.5 341 63.3
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 9.0e-123 444.5 357 62.7
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 1.2e-122 444.1 366 60.1
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 2.6e-122 443.0 342 59.6
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 4.5e-122 442.2 336 64.9
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 4.5e-122 442.2 349 63.9
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 4.5e-122 442.2 343 62.1
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.9e-121 439.5 337 66.2
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 1.1e-120 437.6 272 80.1
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 1.4e-120 437.2 366 59.0
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.5e-120 436.4 364 61.5
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 3.2e-120 436.0 395 57.7
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 7.1e-120 434.9 359 61.6
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 9.3e-120 434.5 367 61.3
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 2.1e-119 433.3 357 60.8
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 4.6e-119 432.2 346 62.1
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 7.9e-119 431.4 328 62.8
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 3.9e-118 429.1 359 60.4
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 3.3e-117 426.0 345 61.7
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 7.4e-117 424.9 352 59.1
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 2.2e-116 423.3 326 64.7
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.2e-114 417.5 354 61.3
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 5.9e-114 415.2 270 73.7
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 1.7e-113 413.7 327 60.2
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 1.0e-110 404.4 344 57.6
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 1.1e-107 394.4 294 63.9
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 1.1e-107 394.4 328 61.3
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 9.1e-107 391.3 260 71.9
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 2.0e-106 390.2 357 56.3
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.4e-102 377.5 362 55.0
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.1e-101 374.4 330 59.7
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.3e-101 372.9 326 57.4
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 6.3e-100 368.6 373 51.2
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 2.9e-97 359.8 389 51.2
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 3.2e-96 356.3 294 58.8
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 7.2e-96 355.1 334 56.6
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.3e-93 346.3 340 52.4
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 8.2e-92 341.7 237 69.2
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 8.2e-92 341.7 265 64.9
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.1e-91 339.7 385 49.9
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.2e-89 333.6 362 50.8
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 3.3e-85 319.7 308 55.2
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 7.0e-83 312.0 339 47.2
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.5e-80 303.5 323 52.9
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 2.1e-79 300.4 359 44.3
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 1.0e-78 298.1 358 47.5
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.4e-78 297.7 270 59.3
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 1.5e-77 294.3 243 60.1
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 2.2e-76 290.4 539 35.4
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 9.5e-72 275.0 331 44.4
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 9.5e-72 275.0 228 59.6
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 1.9e-64 250.8 188 66.0
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 2.5e-64 250.4 183 66.1
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 6.8e-62 242.3 298 44.6
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 8.9e-54 215.3 247 49.0
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 1.2e-53 214.9 195 51.3
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 8.6e-41 172.2 173 55.5
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 3.3e-40 170.2 114 70.2
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 5.4e-35 152.9 360 32.5
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 1.3e-33 148.3 312 32.1
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 6.2e-31 139.4 313 30.0
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 1.6e-26 124.8 96 62.5
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 1.6e-23 114.8 81 66.7
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 1.5e-21 108.2 56 85.7
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.6e-18 98.2 63 69.8
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.6e-18 98.2 102 49.0
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 1.2e-13 82.0 123 43.1
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 1.5e-08 65.1 35 74.3
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 5.6e-08 63.2 29 89.7
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 8.2e-07 59.3 31 80.6
SEGI_35437 Sequoiadendron giganteum HOM05D004534 ORTHO05D005413 1.8e-06 58.2 54 55.6


User provided reference genes

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