Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1179300 Malus domestica HOM05D005755 ORTHO05D007006 1.4e-54 216.1 111 100.0
MD01G1131200 Malus domestica HOM05D005755 ORTHO05D007006 1.0e-49 199.9 111 91.0
Prupe.2G218600 Prunus persica HOM05D005755 ORTHO05D007006 8.1e-47 190.3 111 86.5
FAN10G3796 Fragaria x ananassa HOM05D005755 ORTHO05D007006 6.4e-44 180.6 111 84.7
Eucgr.G02800 Eucalyptus grandis HOM05D005755 ORTHO05D007006 3.2e-43 178.3 111 79.3
FvH4_7g20160 Fragaria vesca HOM05D005755 ORTHO05D007006 3.2e-43 178.3 111 83.8
FAN01G0677 Fragaria x ananassa HOM05D005755 ORTHO05D007006 4.2e-43 177.9 111 83.8
RcHm_v2.0_Chr1g0364121 Rosa chinensis HOM05D005755 ORTHO05D007006 7.1e-43 177.2 111 83.8
Ciclev10033129m.g Citrus clementina HOM05D005755 ORTHO05D007006 7.8e-42 173.7 111 78.4
CiPaw.15G145100 Carya illinoinensis HOM05D005755 ORTHO05D007006 1.0e-41 173.3 111 81.1
Nn5g30302 Nelumbo nucifera HOM05D005755 ORTHO05D007006 2.3e-41 172.2 111 77.5
FAN06G3582 Fragaria x ananassa HOM05D005755 ORTHO05D007006 3.0e-41 171.8 109 80.7
TAR381G1573 Trochodendron aralioides HOM05D005755 ORTHO05D007006 3.0e-41 171.8 111 74.8
Sed0018161 Sechium edule HOM05D005755 ORTHO05D007006 3.9e-41 171.4 111 76.6
QL08p056843 Quercus lobata HOM05D005755 ORTHO05D007006 5.1e-41 171.0 109 78.9
Atru.chr12.636 Acer truncatum HOM05D005755 ORTHO05D007006 6.6e-41 170.6 109 78.0
Dinv04676 Davidia involucrata HOM05D005755 ORTHO05D007006 6.6e-41 170.6 110 79.1
CsaV3_3G030820 Cucumis sativus L. HOM05D005755 ORTHO05D007006 1.1e-40 169.9 111 79.3
DCAR_015273 Daucus carota HOM05D005755 ORTHO05D007006 1.9e-40 169.1 110 76.4
FAN03G2322 Fragaria x ananassa HOM05D005755 ORTHO05D007006 3.3e-40 168.3 106 82.1
Cfa019629 Carpinus fangiana HOM05D005755 ORTHO05D007006 1.3e-39 166.4 109 76.1
Thecc.10G068000 Theobroma cacao HOM05D005755 ORTHO05D007006 1.3e-39 166.4 110 74.5
Hund18453 Selenicereus undatus HOM05D005755 ORTHO05D007006 2.8e-39 165.2 111 74.8
Dinv11808 Davidia involucrata HOM05D005755 ORTHO05D007006 3.6e-39 164.9 110 76.4
Duzib106G1131 Durio zibethinus HOM05D005755 ORTHO05D007006 3.6e-39 164.9 110 75.5
Glyma.05G164400 Glycine max HOM05D005755 ORTHO05D007006 4.8e-39 164.5 111 74.8
Glyma.08G121800 Glycine max HOM05D005755 ORTHO05D007006 6.2e-39 164.1 111 74.8
Cpa.g.sc53.20 Carica papaya HOM05D005755 ORTHO05D007006 8.1e-39 163.7 106 77.4
CANSAT11G0923 Cannabis sativa HOM05D005755 ORTHO05D007006 3.1e-38 161.8 111 73.9
Sc05g0001890 Simmondsia chinensis HOM05D005755 ORTHO05D007006 3.1e-38 161.8 111 73.0
Gohir.A01G133200 Gossypium hirsutum HOM05D005755 ORTHO05D007006 5.3e-38 161.0 110 72.7
Gorai.002G143500 Gossypium raimondii HOM05D005755 ORTHO05D007006 9.0e-38 160.2 110 72.7
Duzib114G0063 Durio zibethinus HOM05D005755 ORTHO05D007006 1.2e-37 159.8 112 72.3
Manes.10G042600 Manihot esculenta HOM05D005755 ORTHO05D007006 1.5e-37 159.5 109 73.4
PGR142G0594 Punica granatum HOM05D005755 ORTHO05D007006 1.5e-37 159.5 111 71.2
TPR.G12499 Trifolium pratense HOM05D005755 ORTHO05D007006 1.5e-37 159.5 109 70.6
TWI15G0398 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 1.5e-37 159.5 109 75.2
AUR62004768 Chenopodium quinoa HOM05D005755 ORTHO05D007006 2.0e-37 159.1 109 73.4
Phvul.002G244400 Phaseolus vulgaris HOM05D005755 ORTHO05D007006 2.0e-37 159.1 111 70.3
Ah.04g160050 Amaranthus hybridus HOM05D005755 ORTHO05D007006 4.5e-37 157.9 107 74.8
CSS0044562 Camellia sinensis var. sinensis HOM05D005755 ORTHO05D007006 4.5e-37 157.9 108 75.9
Ca_19066_v3 Cicer arietinum L. HOM05D005755 ORTHO05D007006 9.9e-37 156.8 109 70.6
MBI19_g25006_MAGBIO Magnolia biondii HOM05D005755 ORTHO05D007006 9.9e-37 156.8 111 73.9
HPP92_016041 Vanilla planifolia HOM05D005755 ORTHO05D007006 9.9e-37 156.8 111 71.2
EL10Ac7g15953 Beta vulgaris HOM05D005755 ORTHO05D007006 1.3e-36 156.4 109 69.7
Psat1g119080 Pisum sativum HOM05D005755 ORTHO05D007006 1.3e-36 156.4 109 68.8
GSVIVG01016339001 Vitis vinifera HOM05D005755 ORTHO05D007006 1.7e-36 156.0 111 72.1
AUR62037483 Chenopodium quinoa HOM05D005755 ORTHO05D007006 2.2e-36 155.6 104 75.0
vmacro04890 Vaccinium macrocarpon HOM05D005755 ORTHO05D007006 2.2e-36 155.6 111 73.9
TWI38G1562 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 2.9e-36 155.2 108 72.2
EL10Ac3g06003 Beta vulgaris HOM05D005755 ORTHO05D007006 3.8e-36 154.8 109 68.8
Actinidia38859 Actinidia chinensis HOM05D005755 ORTHO05D007006 1.4e-35 152.9 111 70.3
Hma1.2p1_0157F.1_g068960 Hydrangea macrophylla HOM05D005755 ORTHO05D007006 1.4e-35 152.9 110 72.7
Medtr6g068850 Medicago truncatula HOM05D005755 ORTHO05D007006 2.4e-35 152.1 109 66.1
Potri.008G044200 Populus trichocarpa HOM05D005755 ORTHO05D007006 3.2e-35 151.8 111 68.5
Lalb_Chr07g0186081 Lupinus albus HOM05D005755 ORTHO05D007006 4.2e-35 151.4 113 68.1
Sabra08G0030600 Salix brachista HOM05D005755 ORTHO05D007006 5.4e-35 151.0 109 69.7
Aqoxy3G01116 Aquilegia oxysepala HOM05D005755 ORTHO05D007006 1.6e-34 149.4 109 67.9
Gohir.D01G118000 Gossypium hirsutum HOM05D005755 ORTHO05D007006 2.1e-34 149.1 128 62.5
Lj4g0006534 Lotus japonicus HOM05D005755 ORTHO05D007006 2.7e-34 148.7 111 67.6
EL10Ac6g13227 Beta vulgaris HOM05D005755 ORTHO05D007006 3.5e-34 148.3 109 66.1
Cc00_g19060 Coffea canephora HOM05D005755 ORTHO05D007006 3.5e-34 148.3 114 69.3
VMungo0251G2378 Vigna mungo HOM05D001210 ORTHO05D001036 3.5e-34 148.3 106 70.8
Peaxi162Scf00373g00210 Petunia axillaris HOM05D005755 ORTHO05D007006 1.3e-33 146.4 112 70.5
EL10Ac7g17935 Beta vulgaris HOM05D005755 ORTHO05D007006 1.8e-33 146.0 99 71.7
Peaxi162Scf00111g00718 Petunia axillaris HOM05D005755 ORTHO05D007006 2.3e-33 145.6 102 73.5
Rhsim09G0154200 Rhododendron simsii HOM05D001639 ORTHO05D004140 1.5e-32 142.9 136 60.3
ATR1096G048 Amborella trichopoda HOM05D005755 ORTHO05D007006 3.3e-32 141.7 106 64.2
CDE10G1261 Ceratophyllum demersum HOM05D005755 ORTHO05D007006 4.3e-32 141.4 111 61.3
Lsat_1_v5_gn_2_46180 Lactuca sativa HOM05D005755 ORTHO05D007006 4.3e-32 141.4 109 67.0
THA.LOC104799357 Tarenaya hassleriana HOM05D005755 ORTHO05D007006 4.3e-32 141.4 111 63.1
EL10Ac5g11654 Beta vulgaris HOM05D005755 ORTHO05D007006 1.6e-31 139.4 96 70.8
ECA238G0308 Erigeron canadensis HOM05D005755 ORTHO05D007006 2.1e-31 139.0 108 66.7
Nitab4.5_0001721g0080 Nicotiana tabacum HOM05D005755 ORTHO05D007006 2.1e-31 139.0 112 67.0
Nitab4.5_0000061g0170 Nicotiana tabacum HOM05D005755 ORTHO05D007006 4.8e-31 137.9 112 67.0
PSO675G6920 Papaver somniferum HOM05D005755 ORTHO05D007006 4.8e-31 137.9 104 63.5
Potri.010G217300 Populus trichocarpa HOM05D005755 ORTHO05D007006 6.2e-31 137.5 104 65.4
arahy.Tifrunner.gnm1.ann1.FL0JYU Arachis hypogaea HOM05D005755 ORTHO05D007006 8.1e-31 137.1 107 63.6
arahy.Tifrunner.gnm1.ann1.QA5RE0 Arachis hypogaea HOM05D005755 ORTHO05D007006 8.1e-31 137.1 107 63.6
Sopen07g033930 Solanum pennellii HOM05D005755 ORTHO05D007006 8.1e-31 137.1 102 67.6
Sp6g14210 Schrenkiella parvula HOM05D005755 ORTHO05D007006 1.1e-30 136.7 111 65.8
Sopen04g020610 Solanum pennellii HOM05D005755 ORTHO05D007006 1.1e-30 136.7 102 69.6
PGSC0003DMG400022164 Solanum tuberosum HOM05D005755 ORTHO05D007006 1.1e-30 136.7 102 67.6
CARHR264900 Cardamine hirsuta HOM05D005755 ORTHO05D007006 1.4e-30 136.3 111 64.0
Solyc07g065720.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 1.4e-30 136.3 101 68.3
Solyc04g049970.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 1.8e-30 136.0 101 70.3
Oeu017232.1 Olea europaea HOM05D005755 ORTHO05D007006 2.4e-30 135.6 99 69.7
CAN.G79.77 Capsicum annuum HOM05D005755 ORTHO05D007006 3.1e-30 135.2 102 68.6
Thhalv10015092m.g Eutrema salsugineum HOM05D005755 ORTHO05D007006 5.3e-30 134.4 111 65.8
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 5.3e-30 134.4 101 68.3
BcaB08g35550 Brassica carinata HOM05D005755 ORTHO05D007006 9.0e-30 133.7 111 66.7
Oeu057236.1 Olea europaea HOM05D005755 ORTHO05D007006 9.0e-30 133.7 99 67.7
MSTRG.8164 Avicennia marina HOM05D005755 ORTHO05D007006 1.5e-29 132.9 101 70.3
AT5G51960 Arabidopsis thaliana HOM05D005755 ORTHO05D007006 2.0e-29 132.5 111 63.1
A10p09750 Brassica napus HOM05D005755 ORTHO05D007006 3.4e-29 131.7 111 65.8
Aa31LG7G12880 Aethionema arabicum HOM05D005755 ORTHO05D007006 4.5e-29 131.3 110 62.7
AL8G32330 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 7.6e-29 130.6 111 63.1
BraA10t43055Z Brassica rapa HOM05D005755 ORTHO05D007006 9.9e-29 130.2 111 64.9
Carub.0008s1205 Capsella rubella HOM05D005755 ORTHO05D007006 9.9e-29 130.2 109 62.4
BcaC04g20616 Brassica carinata HOM05D005755 ORTHO05D007006 1.7e-28 129.4 111 64.9
C09p41470 Brassica napus HOM05D005755 ORTHO05D007006 1.7e-28 129.4 111 64.9
BolC9t57024H Brassica oleracea HOM05D005755 ORTHO05D007006 1.7e-28 129.4 111 64.9
BcaC03g14561 Brassica carinata HOM05D005755 ORTHO05D007006 4.9e-28 127.9 110 63.6
C02p20090 Brassica napus HOM05D005755 ORTHO05D007006 4.9e-28 127.9 110 63.6
BolC2t08139H Brassica oleracea HOM05D005755 ORTHO05D007006 4.9e-28 127.9 110 63.6
Migut.F01798 Erythranthe guttata HOM05D005755 ORTHO05D007006 6.4e-28 127.5 100 65.0
AL8G26290 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 8.4e-28 127.1 109 62.4
BraA02t06267Z Brassica rapa HOM05D005755 ORTHO05D007006 1.9e-27 125.9 103 66.0
SalBow1G5334 Salvia bowleyana HOM05D005755 ORTHO05D007006 3.2e-27 125.2 112 60.7
SalBow1G7067 Salvia bowleyana HOM05D005755 ORTHO05D007006 3.2e-27 125.2 112 60.7
SEGI_41538 Sequoiadendron giganteum HOM05D005755 ORTHO05D007006 7.1e-27 124.0 104 57.7
SalBow3G2244 Salvia bowleyana HOM05D005755 ORTHO05D007006 9.3e-27 123.6 112 59.8
SalBow3G3619 Salvia bowleyana HOM05D005755 ORTHO05D007006 9.3e-27 123.6 112 59.8
BcaB05g23952 Brassica carinata HOM05D005755 ORTHO05D007006 7.9e-26 120.6 103 63.1
Os11g0133900 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 3.9e-25 118.2 99 61.6
unitig_8.g3685 Utricularia gibba HOM05D005755 ORTHO05D007006 8.7e-25 117.1 99 65.7
Zm00001eb163500 Zea mays HOM05D005755 ORTHO05D007006 5.6e-24 114.4 103 57.3
Zm00001eb235420 Zea mays HOM05D005755 ORTHO05D007006 5.6e-24 114.4 103 59.2
SGA_v2.0_scaffold71G24037 Striga asiatica HOM05D005755 ORTHO05D007006 1.6e-23 112.8 100 59.0
Glyma.19G087500 Glycine max HOM05D005755 ORTHO05D007006 8.2e-23 110.5 111 55.9
Haze_18895 Corylus avellana HOM05D005755 ORTHO05D007006 3.4e-21 105.1 86 65.1
SMO207G0003 Selaginella moellendorffii HOM05D005755 ORTHO05D007006 4.5e-21 104.8 104 55.8
TPR.G31353 Trifolium pratense HOM05D005755 ORTHO05D007006 6.5e-20 100.9 55 87.3
Os12g0131266 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 1.4e-19 99.8 83 60.2
AagrBONN_evm.TU.Sc2ySwM_362.2659 Anthoceros agrestis HOM05D005755 ORTHO05D007006 3.2e-19 98.6 95 52.6
Mapoly0006s0175 Marchantia polymorpha HOM05D005755 ORTHO05D007006 5.5e-19 97.8 99 49.5
Lj3g0006677 Lotus japonicus HOM05D005755 ORTHO05D007006 7.1e-19 97.4 74 63.5
Lj3g0023846 Lotus japonicus HOM05D005755 ORTHO05D007006 3.7e-15 85.1 73 58.9
Prupe.2G218400 Prunus persica HOM05D005755 ORTHO05D007006 4.8e-15 84.7 117 53.0
Pp3c3_10790 Physcomitrium patens HOM05D005755 ORTHO05D007006 4.1e-14 81.6 102 43.1
HanXRQChr14g0436521 Helianthus annuus HOM05D005755 ORTHO05D007006 3.8e-12 75.1 72 52.8
ClCG08G001190 Citrullus lanatus HOM05D005755 ORTHO05D007006 1.4e-11 73.2 64 56.2
Oeu057237.1 Olea europaea HOM05D005755 ORTHO05D007006 4.6e-10 68.2 65 52.3
AL792U10010 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 1.8e-09 66.2 73 50.7
SEGI_15077 Sequoiadendron giganteum HOM05D002017 ORTHO05D007006 1.3e-07 60.1 55 54.5
A02p12030 Brassica napus HOM05D005755 ORTHO05D007006 6.3e-07 57.8 67 49.3


User provided reference genes

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