Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1156900 Malus domestica HOM05D005894 ORTHO05D007461 4.8e-174 614.4 307 100.0
Prupe.2G195400 Prunus persica HOM05D005894 ORTHO05D007461 4.1e-133 478.4 300 80.7
Haze_15704 Corylus avellana HOM05D005894 ORTHO05D007461 3.7e-118 428.7 309 66.7
FAN10G2153 Fragaria x ananassa HOM05D005894 ORTHO05D007461 3.7e-118 428.7 301 69.4
Cfa003752 Carpinus fangiana HOM05D005894 ORTHO05D007461 3.2e-117 425.6 309 66.7
FAN06G1719 Fragaria x ananassa HOM05D005894 ORTHO05D007461 1.0e-115 420.6 304 69.1
CiPaw.01G080700 Carya illinoinensis HOM05D005894 ORTHO05D007461 1.7e-115 419.9 309 64.7
FAN03G0327 Fragaria x ananassa HOM05D005894 ORTHO05D007461 2.3e-115 419.5 304 68.1
Haze_15713 Corylus avellana HOM05D005894 ORTHO05D007461 1.1e-114 417.2 309 64.7
FAN10G4192 Fragaria x ananassa HOM05D005894 ORTHO05D007461 1.1e-114 417.2 304 68.1
Thecc.01G335500 Theobroma cacao HOM05D005894 ORTHO05D007461 2.2e-110 402.9 305 64.6
QL08p046701 Quercus lobata HOM05D005894 ORTHO05D007461 5.4e-109 398.3 286 67.8
TAR375G0623 Trochodendron aralioides HOM05D005894 ORTHO05D007461 5.4e-109 398.3 311 63.0
Hma1.2p1_0309F.1_g120580 Hydrangea macrophylla HOM05D005894 ORTHO05D007461 7.1e-109 397.9 305 63.3
Nn3g18834 Nelumbo nucifera HOM05D005894 ORTHO05D007461 7.1e-109 397.9 314 62.1
ClCG06G002760 Citrullus lanatus HOM05D005894 ORTHO05D007461 9.2e-109 397.5 301 62.8
Duzib133G0870 Durio zibethinus HOM05D005894 ORTHO05D007461 1.6e-108 396.7 305 64.9
Potri.002G177500 Populus trichocarpa HOM05D005894 ORTHO05D007461 1.3e-107 393.7 289 65.7
QL08p046715 Quercus lobata HOM05D005894 ORTHO05D007461 1.3e-107 393.7 305 62.3
Lj3g0011008 Lotus japonicus HOM05D005894 ORTHO05D007461 1.2e-105 387.1 304 60.5
arahy.Tifrunner.gnm1.ann1.UMNZ42 Arachis hypogaea HOM05D005894 ORTHO05D007461 3.6e-105 385.6 323 58.8
arahy.Tifrunner.gnm1.ann1.YB3WUJ Arachis hypogaea HOM05D005894 ORTHO05D007461 3.6e-105 385.6 323 58.8
Sabra02G0136100 Salix brachista HOM05D005894 ORTHO05D007461 4.7e-105 385.2 292 63.4
arahy.Tifrunner.gnm1.ann1.IJN1JI Arachis hypogaea HOM05D005894 ORTHO05D007461 6.2e-105 384.8 311 60.8
TWI14G1398 Tripterygium wilfordii HOM05D005894 ORTHO05D007461 6.2e-105 384.8 311 61.7
HanXRQChr17g0563091 Helianthus annuus HOM05D005894 ORTHO05D007461 1.1e-104 384.0 290 62.8
VMungo0331G1846 Vigna mungo HOM05D005894 ORTHO05D007461 1.4e-104 383.6 317 58.4
Sed0016091 Sechium edule HOM05D005894 ORTHO05D007461 3.1e-104 382.5 287 64.1
arahy.Tifrunner.gnm1.ann1.FN9JYV Arachis hypogaea HOM05D005894 ORTHO05D007461 4.0e-104 382.1 323 58.2
COL.COLO4_06220 Corchorus olitorius HOM05D005894 ORTHO05D007461 5.2e-104 381.7 306 60.8
Manes.01G241500 Manihot esculenta HOM05D005894 ORTHO05D007461 5.2e-104 381.7 291 61.9
Duzib138G0081 Durio zibethinus HOM05D005894 ORTHO05D007461 1.5e-103 380.2 290 62.8
Gohir.A07G134700 Gossypium hirsutum HOM05D005894 ORTHO05D007461 2.0e-103 379.8 298 61.7
Actinidia20275 Actinidia chinensis HOM05D005894 ORTHO05D007461 2.6e-103 379.4 302 61.9
Cpa.g.sc141.18 Carica papaya HOM05D005894 ORTHO05D007461 2.6e-103 379.4 319 57.7
PSO063G1123 Papaver somniferum HOM05D005894 ORTHO05D007461 3.4e-103 379.0 319 61.8
Atru.chr5.746 Acer truncatum HOM05D005894 ORTHO05D007461 4.4e-103 378.6 290 64.1
Aa31LG1G10550 Aethionema arabicum HOM05D005894 ORTHO05D007461 4.4e-103 378.6 285 61.4
BraA10t42349Z Brassica rapa HOM05D005894 ORTHO05D007461 5.8e-103 378.3 303 60.4
ECA234G4535 Erigeron canadensis HOM05D005894 ORTHO05D007461 5.8e-103 378.3 294 60.9
Lalb_Chr17g0342931 Lupinus albus HOM05D005894 ORTHO05D007461 5.8e-103 378.3 296 60.5
AL1G11320 Arabidopsis lyrata HOM05D005894 ORTHO05D007461 7.6e-103 377.9 303 59.1
HanXRQChr16g0524851 Helianthus annuus HOM05D005894 ORTHO05D007461 7.6e-103 377.9 278 64.0
Sp1g01110 Schrenkiella parvula HOM05D005894 ORTHO05D007461 1.3e-102 377.1 303 59.1
vmacro04295 Vaccinium macrocarpon HOM05D005894 ORTHO05D007461 1.7e-102 376.7 299 62.9
A10p00720 Brassica napus HOM05D005894 ORTHO05D007461 2.2e-102 376.3 303 59.7
Gorai.001G151400 Gossypium raimondii HOM05D005894 ORTHO05D007461 3.8e-102 375.6 298 61.1
Sc01g0002310 Simmondsia chinensis HOM05D005894 ORTHO05D007461 3.8e-102 375.6 310 60.6
Glyma.07G051400 Glycine max HOM05D005894 ORTHO05D007461 4.9e-102 375.2 310 59.7
AT1G01180 Arabidopsis thaliana HOM05D005894 ORTHO05D007461 6.4e-102 374.8 300 59.3
CARHR001290 Cardamine hirsuta HOM05D005894 ORTHO05D007461 8.4e-102 374.4 287 61.7
MBI04_g25320_MAGBIO Magnolia biondii HOM05D005894 ORTHO05D007461 8.4e-102 374.4 308 59.1
Phvul.010G118000 Phaseolus vulgaris HOM05D005894 ORTHO05D007461 1.1e-101 374.0 317 58.0
Sed0008841 Sechium edule HOM05D005894 ORTHO05D007461 1.4e-101 373.6 285 64.2
Carub.0001s0103 Capsella rubella HOM05D005894 ORTHO05D007461 4.2e-101 372.1 292 59.6
Thhalv10008287m.g Eutrema salsugineum HOM05D005894 ORTHO05D007461 5.4e-101 371.7 290 60.3
THA.LOC104801356 Tarenaya hassleriana HOM05D005894 ORTHO05D007461 5.4e-101 371.7 284 63.4
Medtr8g024680 Medicago truncatula HOM05D005894 ORTHO05D007461 9.3e-101 370.9 296 61.1
Rhsim07G0001000 Rhododendron simsii HOM05D005894 ORTHO05D007461 2.1e-100 369.8 304 60.5
Gohir.A12G115600 Gossypium hirsutum HOM05D005894 ORTHO05D007461 3.5e-100 369.0 304 60.2
Gohir.D12G119200 Gossypium hirsutum HOM05D005894 ORTHO05D007461 7.8e-100 367.9 304 60.5
MELO3C022251.2 Cucumis melo HOM05D005894 ORTHO05D007461 1.0e-99 367.5 256 65.2
C05p00760 Brassica napus HOM05D005894 ORTHO05D007461 1.3e-99 367.1 287 60.3
BolC5t28860H Brassica oleracea HOM05D005894 ORTHO05D007461 1.3e-99 367.1 287 60.3
Ca_23494_v3 Cicer arietinum L. HOM05D005894 ORTHO05D007461 1.7e-99 366.7 308 60.4
Ca_29944_v3 Cicer arietinum L. HOM05D005894 ORTHO05D007461 1.7e-99 366.7 308 60.4
BcaB03g13563 Brassica carinata HOM05D005894 ORTHO05D007461 2.3e-99 366.3 303 59.7
Lj2g0016031 Lotus japonicus HOM05D005894 ORTHO05D007461 2.3e-99 366.3 300 60.0
Lsat_1_v5_gn_4_31980 Lactuca sativa HOM05D005894 ORTHO05D007461 3.0e-99 365.9 292 59.6
Ciclev10023878m.g Citrus clementina HOM05D005894 ORTHO05D007461 8.7e-99 364.4 300 60.0
Lsat_1_v5_gn_4_31960 Lactuca sativa HOM05D005894 ORTHO05D007461 2.5e-98 362.8 298 58.4
MSTRG.20917 Avicennia marina HOM05D005894 ORTHO05D007461 3.3e-98 362.5 298 58.1
CsaV3_6G008930 Cucumis sativus L. HOM05D005894 ORTHO05D007461 3.3e-98 362.5 253 64.4
Potri.014G103800 Populus trichocarpa HOM05D005894 ORTHO05D007461 4.3e-98 362.1 244 68.4
Psat4g216640 Pisum sativum HOM05D005894 ORTHO05D007461 1.6e-97 360.1 311 55.9
AUR62004546 Chenopodium quinoa HOM05D005894 ORTHO05D007461 4.8e-97 358.6 310 57.1
Oeu042964.1 Olea europaea HOM05D005894 ORTHO05D007461 3.4e-95 352.4 292 58.2
PSO782G1789 Papaver somniferum HOM05D005894 ORTHO05D007461 2.2e-94 349.7 328 58.8
TPR.G14294 Trifolium pratense HOM05D005894 ORTHO05D007461 4.9e-94 348.6 292 56.5
Nitab4.5_0000307g0270 Nicotiana tabacum HOM05D005894 ORTHO05D007461 7.1e-93 344.7 306 55.2
Haze_15705 Corylus avellana HOM05D005894 ORTHO05D007461 9.3e-93 344.4 267 62.9
ATR0090G035 Amborella trichopoda HOM05D005894 ORTHO05D007461 1.2e-92 344.0 303 56.4
Cc02_g39840 Coffea canephora HOM05D005894 ORTHO05D007461 1.0e-91 340.9 325 54.5
Ah.05g179110 Amaranthus hybridus HOM05D005894 ORTHO05D007461 1.3e-91 340.5 300 54.7
Peaxi162Scf00767g00044 Petunia axillaris HOM05D005894 ORTHO05D007461 1.5e-90 337.0 307 52.8
Dinv32633 Davidia involucrata HOM05D005894 ORTHO05D007461 1.9e-90 336.7 300 57.0
Solyc01g096380.1 Solanum lycopersicum HOM05D005894 ORTHO05D007461 2.5e-90 336.3 295 55.9
PGSC0003DMG400018381 Solanum tuberosum HOM05D005894 ORTHO05D007461 2.5e-90 336.3 298 56.0
AUR62022660 Chenopodium quinoa HOM05D005894 ORTHO05D007461 3.3e-90 335.9 225 67.6
Sopen00g010520 Solanum pennellii HOM05D005894 ORTHO05D007461 5.6e-90 335.1 298 55.7
Gorai.008G129200 Gossypium raimondii HOM05D005894 ORTHO05D007461 8.1e-89 331.3 303 59.1
MSTRG.20916 Avicennia marina HOM05D005894 ORTHO05D007461 1.1e-88 330.9 306 53.9
CAN.G1045.39 Capsicum annuum HOM05D005894 ORTHO05D007461 1.5e-87 327.0 289 54.0
Ah.07g207870 Amaranthus hybridus HOM05D005894 ORTHO05D007461 9.9e-87 324.3 297 53.9
Lj9P603T40 Lonicera japonica HOM05D005894 ORTHO05D007461 9.9e-87 324.3 212 71.2
Sc01g0000420 Simmondsia chinensis HOM05D005894 ORTHO05D007461 1.4e-85 320.5 307 51.1
Sc01g0002320 Simmondsia chinensis HOM05D005894 ORTHO05D007461 4.2e-85 318.9 309 50.8
MBI04_g22377_MAGBIO Magnolia biondii HOM05D005894 ORTHO05D007461 9.3e-85 317.8 286 56.3
FAN01G2899 Fragaria x ananassa HOM05D005894 ORTHO05D007461 6.0e-84 315.1 217 67.3
SEGI_06461 Sequoiadendron giganteum HOM05D005894 ORTHO05D007461 6.0e-84 315.1 311 50.2
MSTRG.26254 Avicennia marina HOM05D005894 ORTHO05D007461 1.3e-81 307.4 285 53.3
Migut.B01913 Erythranthe guttata HOM05D005894 ORTHO05D007461 4.8e-81 305.4 305 51.8
Gohir.D07G139300 Gossypium hirsutum HOM05D005894 ORTHO05D007461 1.2e-76 290.8 247 58.3
TPR.G25260 Trifolium pratense HOM05D005894 ORTHO05D007461 1.2e-76 290.8 186 69.9
Pp3c23_20890 Physcomitrium patens HOM05D005894 ORTHO05D007461 3.5e-76 289.3 241 56.8
SGA_v2.0_scaffold5G03060 Striga asiatica HOM05D005894 ORTHO05D007461 8.7e-75 284.6 227 57.3
Pp3c20_5150 Physcomitrium patens HOM05D005894 ORTHO05D007461 4.3e-74 282.3 241 55.2
SalBow6G4791 Salvia bowleyana HOM05D005894 ORTHO05D007461 2.4e-72 276.6 287 49.1
Os09g0518900 Oryza sativa ssp. japonica HOM05D005894 ORTHO05D007461 3.1e-72 276.2 241 56.8
Mapoly0044s0088 Marchantia polymorpha HOM05D005894 ORTHO05D007461 9.0e-72 274.6 241 51.9
Zm00001eb102910 Zea mays HOM05D005894 ORTHO05D007461 5.9e-71 271.9 311 49.2
Zm00001eb102940 Zea mays HOM05D005894 ORTHO05D007461 5.9e-71 271.9 311 49.2
AagrBONN_evm.TU.Sc2ySwM_228.2264 Anthoceros agrestis HOM05D005894 ORTHO05D007461 1.7e-70 270.4 237 51.5
EL10Ac5g10561 Beta vulgaris HOM05D005894 ORTHO05D007461 8.5e-70 268.1 289 46.4
unitig_52.g17564 Utricularia gibba HOM05D005894 ORTHO05D007461 2.5e-69 266.5 227 52.9
SalBow3G0292 Salvia bowleyana HOM05D005894 ORTHO05D007461 5.5e-69 265.4 213 54.9
SalBow3G4666 Salvia bowleyana HOM05D005894 ORTHO05D007461 5.5e-69 265.4 213 54.9
unitig_744.g24593 Utricularia gibba HOM05D005894 ORTHO05D007461 5.5e-61 238.8 289 43.6
Oeu022737.1 Olea europaea HOM05D005894 ORTHO05D007461 1.2e-60 237.7 154 70.1
unitig_744.g24591 Utricularia gibba HOM05D005894 ORTHO05D007461 2.7e-60 236.5 289 43.3
unitig_21.g20086 Utricularia gibba HOM05D005894 ORTHO05D007461 7.4e-58 228.4 290 41.7
RcHm_v2.0_Chr1g0360831 Rosa chinensis HOM05D005894 ORTHO05D007461 6.3e-57 225.3 194 60.8
FAN06G4171 Fragaria x ananassa HOM05D005894 ORTHO05D007461 1.2e-55 221.1 134 75.4
unitig_744.g24581 Utricularia gibba HOM05D005894 ORTHO05D007461 6.7e-51 205.3 244 44.7
EL10Ac1g00202 Beta vulgaris HOM05D005894 ORTHO05D007461 7.0e-48 195.3 137 67.9
RcHm_v2.0_Chr1g0360821 Rosa chinensis HOM05D005894 ORTHO05D007461 1.0e-46 191.4 105 83.8
Sc17g0001460 Simmondsia chinensis HOM05D005894 ORTHO05D387453 3.8e-46 189.5 292 37.7
SMO367G0414 Selaginella moellendorffii HOM05D005894 ORTHO05D007461 3.6e-44 183.0 137 60.6
unitig_21.g20129 Utricularia gibba HOM05D005894 ORTHO05D007461 2.0e-26 124.0 103 53.4
Sc22g0003370 Simmondsia chinensis HOM05D005894 ORTHO05D007461 7.0e-24 115.5 164 39.0
unitig_21.g20130 Utricularia gibba HOM05D005894 ORTHO05D007461 3.1e-11 73.6 132 34.8
unitig_52.g17562 Utricularia gibba HOM05D005894 ORTHO05D420364 8.6e-06 55.5 47 46.8


User provided reference genes

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