Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1152500 Malus domestica HOM05D004435 ORTHO05D005103 1.4e-26 122.1 57 100.0
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 7.4e-20 99.8 50 92.0
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 2.2e-19 98.2 49 91.8
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 9.0e-18 92.8 49 83.7
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 1.2e-17 92.4 49 83.7
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 1.5e-17 92.0 50 84.0
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.5e-17 92.0 50 84.0
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 1.5e-17 92.0 50 84.0
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 5.9e-17 90.1 49 81.6
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 5.9e-17 90.1 49 81.6
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 1.0e-16 89.4 51 78.4
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 1.3e-16 89.0 49 79.6
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 1.7e-16 88.6 50 78.0
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 1.7e-16 88.6 51 76.5
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 2.2e-16 88.2 50 80.0
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 2.9e-16 87.8 54 72.2
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 3.8e-16 87.4 54 72.2
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 6.5e-16 86.7 48 81.2
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 6.5e-16 86.7 48 81.2
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 8.5e-16 86.3 49 79.6
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 8.5e-16 86.3 50 76.0
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 8.5e-16 86.3 48 79.2
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 8.5e-16 86.3 51 74.5
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 1.1e-15 85.9 49 77.6
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 1.4e-15 85.5 51 74.5
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 1.9e-15 85.1 48 77.1
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 1.9e-15 85.1 48 79.2
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 1.9e-15 85.1 48 75.0
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 2.5e-15 84.7 48 79.2
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 2.5e-15 84.7 50 74.0
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 4.2e-15 84.0 49 69.4
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 4.2e-15 84.0 51 72.5
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 5.5e-15 83.6 53 73.6
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 5.5e-15 83.6 51 72.5
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 7.2e-15 83.2 48 75.0
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 7.2e-15 83.2 48 77.1
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 7.2e-15 83.2 50 72.0
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 9.3e-15 82.8 48 75.0
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 9.3e-15 82.8 50 70.0
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 1.2e-14 82.4 50 72.0
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 1.6e-14 82.0 48 75.0
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 1.6e-14 82.0 51 70.6
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 2.7e-14 81.3 47 72.3
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 2.7e-14 81.3 50 78.0
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 2.7e-14 81.3 50 78.0
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 2.7e-14 81.3 50 78.0
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 2.7e-14 81.3 50 78.0
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 2.7e-14 81.3 47 76.6
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 4.6e-14 80.5 47 74.5
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 4.6e-14 80.5 51 68.6
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 1.0e-13 79.3 49 69.4
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 1.0e-13 79.3 49 69.4
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.4e-13 79.0 47 74.5
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 1.4e-13 79.0 49 69.4
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 1.8e-13 78.6 48 68.8
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 1.8e-13 78.6 48 70.8
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 3.0e-13 77.8 48 64.6
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 3.9e-13 77.4 48 64.6
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 3.9e-13 77.4 48 68.8
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 3.9e-13 77.4 49 65.3
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 3.9e-13 77.4 54 70.4
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 3.9e-13 77.4 48 66.7
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 5.1e-13 77.0 48 62.5
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 6.7e-13 76.6 47 70.2
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 6.7e-13 76.6 48 68.8
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 8.8e-13 76.3 48 62.5
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 8.8e-13 76.3 48 62.5
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 8.8e-13 76.3 48 62.5
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 8.8e-13 76.3 50 66.0
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 8.8e-13 76.3 47 74.5
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 1.1e-12 75.9 48 66.7
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 1.1e-12 75.9 48 60.4
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 1.5e-12 75.5 48 62.5
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 2.5e-12 74.7 50 62.0
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 2.5e-12 74.7 48 62.5
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 2.5e-12 74.7 48 60.4
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 2.5e-12 74.7 48 60.4
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 3.3e-12 74.3 48 58.3
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 3.3e-12 74.3 49 63.3
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 5.7e-12 73.6 47 70.2
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 7.4e-12 73.2 48 62.5
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 7.4e-12 73.2 47 68.1
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 7.4e-12 73.2 47 68.1
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 9.7e-12 72.8 48 64.6
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 2.8e-11 71.2 49 61.2
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 3.7e-11 70.9 44 70.5
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 1.4e-10 68.9 48 66.7
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 1.4e-10 68.9 46 63.0
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 1.8e-10 68.6 52 57.7
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 2.4e-10 68.2 38 73.7
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 5.3e-10 67.0 52 55.8
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 9.1e-10 66.2 44 63.6
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 1.2e-09 65.9 58 53.4
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 1.5e-09 65.5 56 55.4
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 1.5e-09 65.5 50 58.0
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 1.7e-08 62.0 48 60.4
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 1.7e-08 62.0 48 60.4
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 1.6e-06 55.5 44 59.1


User provided reference genes

Program Settings