Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1144900 Malus domestica HOM05D001384 ORTHO05D001215 1.8e-34 149.1 97 100.0
Prupe.2G183500 Prunus persica HOM05D001384 ORTHO05D001215 3.7e-27 124.8 97 74.2
MD01G1076000 Malus domestica HOM05D001384 ORTHO05D001215 6.2e-27 124.0 97 86.6
FAN01G1051 Fragaria x ananassa HOM05D001384 ORTHO05D001215 2.5e-15 85.5 97 70.1
Atru.chr5.621 Acer truncatum HOM05D001384 ORTHO05D001215 1.3e-13 79.7 84 57.1
RcHm_v2.0_Chr1g0358781 Rosa chinensis HOM05D001384 ORTHO05D001215 3.9e-13 78.2 97 66.0
FAN10G3769 Fragaria x ananassa HOM05D001384 ORTHO05D001215 5.1e-13 77.8 97 67.0
FAN06G3780 Fragaria x ananassa HOM05D001384 ORTHO05D001215 8.7e-13 77.0 97 66.0
FAN10G1694 Fragaria x ananassa HOM05D001384 ORTHO05D001215 8.7e-13 77.0 97 66.0
Aa31LG10G15620 Aethionema arabicum HOM05D001384 ORTHO05D001215 1.1e-12 76.6 40 92.5
FAN06G2635 Fragaria x ananassa HOM05D001384 ORTHO05D001215 1.1e-12 76.6 97 66.0
FAN03G0436 Fragaria x ananassa HOM05D001384 ORTHO05D001215 2.5e-12 75.5 97 66.0
AL4G45630 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 4.3e-12 74.7 40 90.0
AT2G46330 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 4.3e-12 74.7 40 90.0
BcaB01g03229 Brassica carinata HOM05D001384 ORTHO05D001215 4.3e-12 74.7 40 90.0
A03p25570 Brassica napus HOM05D001384 ORTHO05D001215 4.3e-12 74.7 40 90.0
BraA03t11773Z Brassica rapa HOM05D001384 ORTHO05D001215 4.3e-12 74.7 40 90.0
Carub.0004s2903 Capsella rubella HOM05D001384 ORTHO05D001215 4.3e-12 74.7 40 90.0
Thhalv10001752m.g Eutrema salsugineum HOM05D001384 ORTHO05D001215 4.3e-12 74.7 40 90.0
Gohir.D11G099700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 4.3e-12 74.7 89 59.6
Gorai.007G105900 Gossypium raimondii HOM05D001384 ORTHO05D001215 4.3e-12 74.7 89 59.6
Sp4g28370 Schrenkiella parvula HOM05D001384 ORTHO05D001215 5.7e-12 74.3 40 90.0
C03p30500 Brassica napus HOM05D001384 ORTHO05D001215 9.7e-12 73.6 40 87.5
CiPaw.01G072100 Carya illinoinensis HOM05D001384 ORTHO05D001215 9.7e-12 73.6 90 53.3
BcaB01g03227 Brassica carinata HOM05D001384 ORTHO05D001215 1.3e-11 73.2 40 87.5
BcaC01g05077 Brassica carinata HOM05D001384 ORTHO05D001215 1.3e-11 73.2 40 87.5
CSS0003232 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 1.6e-11 72.8 83 62.7
Duzib133G0751 Durio zibethinus HOM05D001384 ORTHO05D001215 1.6e-11 72.8 90 60.0
Gohir.A10G199650 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.6e-11 72.8 89 58.4
CsaV3_3G008420 Cucumis sativus L. HOM05D001384 ORTHO05D001215 2.8e-11 72.0 92 52.2
Gohir.A10G068700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.8e-11 72.0 89 58.4
BcaB01g03224 Brassica carinata HOM05D001384 ORTHO05D001215 3.7e-11 71.6 40 87.5
BcaC01g05082 Brassica carinata HOM05D001384 ORTHO05D001215 3.7e-11 71.6 76 56.6
BcaC02g12698 Brassica carinata HOM05D001384 ORTHO05D001215 3.7e-11 71.6 40 87.5
BcaC02g12816 Brassica carinata HOM05D001384 ORTHO05D001215 3.7e-11 71.6 40 87.5
A05p01460 Brassica napus HOM05D001384 ORTHO05D001215 3.7e-11 71.6 40 87.5
C04p01650 Brassica napus HOM05D001384 ORTHO05D001215 3.7e-11 71.6 40 87.5
BolC4t21817H Brassica oleracea HOM05D001384 ORTHO05D001215 3.7e-11 71.6 40 87.5
BraA05t19143Z Brassica rapa HOM05D001384 ORTHO05D001215 3.7e-11 71.6 40 87.5
CARHR141610 Cardamine hirsuta HOM05D001384 ORTHO05D001215 3.7e-11 71.6 40 87.5
Thecc.01G347500 Theobroma cacao HOM05D001384 ORTHO05D001215 3.7e-11 71.6 90 57.8
TAR636G2986 Trochodendron aralioides HOM05D001384 ORTHO05D001215 4.8e-11 71.2 39 97.4
COL.COLO4_06332 Corchorus olitorius HOM05D001384 ORTHO05D001215 8.2e-11 70.5 90 56.7
PGSC0003DMG400000207 Solanum tuberosum HOM05D001384 ORTHO05D001215 8.2e-11 70.5 40 90.0
Actinidia28493 Actinidia chinensis HOM05D001384 ORTHO05D001215 1.4e-10 69.7 83 57.8
Nitab4.5_0000305g0110 Nicotiana tabacum HOM05D001384 ORTHO05D001215 1.4e-10 69.7 40 90.0
Os01g0657000 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 1.4e-10 69.7 40 82.5
TAR375G0324 Trochodendron aralioides HOM05D001384 ORTHO05D001215 1.4e-10 69.7 83 55.4
Actinidia02805 Actinidia chinensis HOM05D001384 ORTHO05D001215 2.4e-10 68.9 38 94.7
ClCG05G001090 Citrullus lanatus HOM05D001384 ORTHO05D001215 2.4e-10 68.9 37 97.3
Dinv43894 Davidia involucrata HOM05D001384 ORTHO05D001215 2.4e-10 68.9 90 53.3
Duzib138G1328 Durio zibethinus HOM05D001384 ORTHO05D001215 2.4e-10 68.9 90 57.8
Sed0001168 Sechium edule HOM05D001384 ORTHO05D001215 2.4e-10 68.9 37 97.3
Hma1.2p1_0384F.1_g141070 Hydrangea macrophylla HOM05D001384 ORTHO05D001215 3.1e-10 68.6 90 55.6
CDE08G0321 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 4.1e-10 68.2 40 82.5
Gohir.A12G110700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 4.1e-10 68.2 86 55.8
Gohir.D12G114000 Gossypium hirsutum HOM05D001384 ORTHO05D001215 4.1e-10 68.2 86 55.8
Os05g0217000 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 4.1e-10 68.2 39 82.1
Solyc01g095515.1 Solanum lycopersicum HOM05D001384 ORTHO05D001215 4.1e-10 68.2 40 87.5
Sopen01g039270 Solanum pennellii HOM05D001384 ORTHO05D001215 4.1e-10 68.2 40 87.5
Sopen10g005520 Solanum pennellii HOM05D001384 ORTHO05D001215 4.1e-10 68.2 40 87.5
HPP92_026774 Vanilla planifolia HOM05D001384 ORTHO05D001215 4.1e-10 68.2 39 84.6
GSVIVG01027049001 Vitis vinifera HOM05D001384 ORTHO05D001215 4.1e-10 68.2 39 92.3
Aa31LG1G27700 Aethionema arabicum HOM05D001384 ORTHO05D001215 5.3e-10 67.8 80 52.5
AT3G61640 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 5.3e-10 67.8 77 58.4
Gohir.A11G210500 Gossypium hirsutum HOM05D001384 ORTHO05D001215 5.3e-10 67.8 87 55.2
Nitab4.5_0009232g0020 Nicotiana tabacum HOM05D001384 ORTHO05D001215 5.3e-10 67.8 40 87.5
Zm00001eb350580 Zea mays HOM05D001384 ORTHO05D001215 5.3e-10 67.8 39 84.6
Zm00001eb359480 Zea mays HOM05D001384 ORTHO05D001215 5.3e-10 67.8 35 91.4
A04p00990 Brassica napus HOM05D001384 ORTHO05D001215 6.9e-10 67.4 77 54.5
Sabra02G0144100 Salix brachista HOM05D001384 ORTHO05D001215 6.9e-10 67.4 39 89.7
BcaB02g08150 Brassica carinata HOM05D001384 ORTHO05D001215 9.0e-10 67.0 76 55.3
Manes.05G026100 Manihot esculenta HOM05D001384 ORTHO05D001215 9.0e-10 67.0 97 61.9
Nitab4.5_0008261g0010 Nicotiana tabacum HOM05D001384 ORTHO05D001215 9.0e-10 67.0 40 85.0
Actinidia20196 Actinidia chinensis HOM05D001384 ORTHO05D001215 1.2e-09 66.6 38 92.1
Gohir.A11G094700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.2e-09 66.6 89 60.7
Gohir.D07G144700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.2e-09 66.6 77 55.8
Nitab4.5_0000522g0080 Nicotiana tabacum HOM05D001384 ORTHO05D001215 1.2e-09 66.6 40 85.0
Aqoxy5G04117 Aquilegia oxysepala HOM05D001384 ORTHO05D001215 1.5e-09 66.2 38 86.8
CAN.G986.43 Capsicum annuum HOM05D001384 ORTHO05D001215 1.5e-09 66.2 40 87.5
DCAR_006964 Daucus carota HOM05D001384 ORTHO05D001215 1.5e-09 66.2 40 82.5
Gohir.A07G139600 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.5e-09 66.2 77 55.8
Gorai.001G156700 Gossypium raimondii HOM05D001384 ORTHO05D001215 1.5e-09 66.2 77 55.8
Gorai.008G123500 Gossypium raimondii HOM05D001384 ORTHO05D001215 1.5e-09 66.2 86 55.8
Peaxi162Scf01012g00121 Petunia axillaris HOM05D001384 ORTHO05D001215 1.5e-09 66.2 40 85.0
THA.LOC104817336 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 1.5e-09 66.2 76 53.9
Dinv32554 Davidia involucrata HOM05D001384 ORTHO05D001215 2.0e-09 65.9 38 94.7
MBI07_g20448_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 2.0e-09 65.9 35 88.6
Potri.014G094800 Populus trichocarpa HOM05D001384 ORTHO05D001215 2.0e-09 65.9 97 56.7
PGSC0003DMG400019380 Solanum tuberosum HOM05D001384 ORTHO05D001215 2.0e-09 65.9 38 86.8
Sed0020989 Sechium edule HOM05D001384 ORTHO05D001215 2.6e-09 65.5 40 87.5
THA.LOC104802055 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 2.6e-09 65.5 38 84.2
TWI59G0487 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 2.6e-09 65.5 38 89.5
Carub.0005s2833 Capsella rubella HOM05D001384 ORTHO05D001215 3.4e-09 65.1 82 51.2
CDE02G4026 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 3.4e-09 65.1 40 77.5
Ciclev10023364m.g Citrus clementina HOM05D001384 ORTHO05D001215 3.4e-09 65.1 84 54.8
Cpa.g.sc194.9 Carica papaya HOM05D001384 ORTHO05D001215 4.5e-09 64.7 90 53.3
Manes.01G249100 Manihot esculenta HOM05D001384 ORTHO05D001215 4.5e-09 64.7 39 89.7
Os02g0264800 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 4.5e-09 64.7 38 84.2
PGR031G3192 Punica granatum HOM05D001384 ORTHO05D001215 4.5e-09 64.7 78 51.3
Zm00001eb237880 Zea mays HOM05D001384 ORTHO05D001215 4.5e-09 64.7 38 84.2
QL04p058637 Quercus lobata HOM05D001384 ORTHO05D001215 5.9e-09 64.3 37 89.2
Rhsim01G0169300 Rhododendron simsii HOM05D001384 ORTHO05D001215 5.9e-09 64.3 38 92.1
BraA04t15816Z Brassica rapa HOM05D001384 ORTHO05D001215 7.6e-09 63.9 77 51.9
CANSAT56G0949 Cannabis sativa HOM05D001384 ORTHO05D001215 7.6e-09 63.9 34 91.2
CDE02G0411 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 7.6e-09 63.9 40 82.5
Haze_15620 Corylus avellana HOM05D001384 ORTHO05D001215 1.0e-08 63.5 93 55.9
arahy.Tifrunner.gnm1.ann1.1BHK1H Arachis hypogaea HOM05D001384 ORTHO05D001215 1.3e-08 63.2 33 93.9
arahy.Tifrunner.gnm1.ann1.57RBBI Arachis hypogaea HOM05D001384 ORTHO05D001215 1.3e-08 63.2 33 90.9
vmacro22519 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 1.3e-08 63.2 83 50.6
AL5G44040 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 1.7e-08 62.8 33 90.9
Os06g0505700 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 1.7e-08 62.8 38 81.6
Solyc10g011730.3 Solanum lycopersicum HOM05D001384 ORTHO05D001215 1.7e-08 62.8 88 52.3
MELO3C006062.2 Cucumis melo HOM05D001384 ORTHO05D001215 2.2e-08 62.4 31 100.0
Lalb_Chr04g0261751 Lupinus albus HOM05D001384 ORTHO05D001215 2.2e-08 62.4 37 89.2
MBI06_g32761_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 2.2e-08 62.4 40 75.0
Sp5g01770 Schrenkiella parvula HOM05D001384 ORTHO05D001215 2.2e-08 62.4 33 90.9
CSS0021424 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 2.9e-08 62.0 36 83.3
arahy.Tifrunner.gnm1.ann1.JZQU6N Arachis hypogaea HOM05D001384 ORTHO05D001215 3.8e-08 61.6 33 90.9
arahy.Tifrunner.gnm1.ann1.XBFI6K Arachis hypogaea HOM05D001384 ORTHO05D001215 3.8e-08 61.6 33 90.9
C04p31180 Brassica napus HOM05D001384 ORTHO05D001215 3.8e-08 61.6 85 47.1
BolC4t24669H Brassica oleracea HOM05D001384 ORTHO05D001215 3.8e-08 61.6 85 47.1
CDE09G1367 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 3.8e-08 61.6 40 80.0
Zm00001eb203920 Zea mays HOM05D001384 ORTHO05D001215 3.8e-08 61.6 37 81.1
PGR042G2194 Punica granatum HOM05D001384 ORTHO05D001215 5.0e-08 61.2 86 51.2
Rhsim07G0006800 Rhododendron simsii HOM05D001384 ORTHO05D001215 6.5e-08 60.8 88 48.9
arahy.Tifrunner.gnm1.ann1.246EX0 Arachis hypogaea HOM05D001384 ORTHO05D001215 8.5e-08 60.5 32 90.6
BcaC02g10241 Brassica carinata HOM05D001384 ORTHO05D001215 1.4e-07 59.7 89 47.2
Manes.02G013300 Manihot esculenta HOM05D001384 ORTHO05D001215 1.4e-07 59.7 82 50.0
Potri.001G094700 Populus trichocarpa HOM05D001384 ORTHO05D001215 1.4e-07 59.7 35 85.7
QL04p059433 Quercus lobata HOM05D001384 ORTHO05D001215 1.4e-07 59.7 95 55.8
vmacro13148 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 1.9e-07 59.3 90 47.8
CiPaw.11G124600 Carya illinoinensis HOM05D001384 ORTHO05D001215 3.2e-07 58.5 36 80.6
Glyma.03G255700 Glycine max HOM05D001384 ORTHO05D001215 3.2e-07 58.5 87 46.0
unitig_62.g23800 Utricularia gibba HOM05D001384 ORTHO05D001215 3.2e-07 58.5 38 73.7
Peaxi162Scf00099g01816 Petunia axillaris HOM05D001384 ORTHO05D001215 4.2e-07 58.2 90 43.3
QL02p031550 Quercus lobata HOM05D001384 ORTHO05D001215 4.2e-07 58.2 33 87.9
TWI15G0052 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 4.2e-07 58.2 31 90.3
Lj1g0002747 Lotus japonicus HOM05D001384 ORTHO05D001215 5.5e-07 57.8 34 82.4
MELO3C032818.2 Cucumis melo HOM05D001384 ORTHO05D001215 7.2e-07 57.4 33 84.8
Duzib205G1079 Durio zibethinus HOM05D001384 ORTHO05D001215 7.2e-07 57.4 77 50.6
Potri.003G136600 Populus trichocarpa HOM05D001384 ORTHO05D001215 7.2e-07 57.4 35 80.0
SMO143G0078 Selaginella moellendorffii HOM05D001384 ORTHO05D001215 7.2e-07 57.4 37 81.1
GSVIVG01028741001 Vitis vinifera HOM05D001384 ORTHO05D001215 7.2e-07 57.4 76 52.6
CDE03G0448 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 9.3e-07 57.0 33 84.8
ClCG07G014860 Citrullus lanatus HOM05D001384 ORTHO05D001215 9.3e-07 57.0 86 47.7
Duzib084G1120 Durio zibethinus HOM05D001384 ORTHO05D001215 9.3e-07 57.0 79 50.6
Migut.E01230 Erythranthe guttata HOM05D001384 ORTHO05D001215 1.2e-06 56.6 36 72.2
Ca_17497_v3 Cicer arietinum L. HOM05D001384 ORTHO05D001215 1.6e-06 56.2 82 43.9
Thecc.03G292300 Theobroma cacao HOM05D001384 ORTHO05D001215 1.6e-06 56.2 86 48.8
CsaV3_4G006390 Cucumis sativus L. HOM05D001384 ORTHO05D001215 2.1e-06 55.8 31 87.1
Gohir.A12G234600 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.1e-06 55.8 74 52.7
Manes.14G018800 Manihot esculenta HOM05D001384 ORTHO05D001215 2.1e-06 55.8 71 53.5
SalBow1G1836 Salvia bowleyana HOM05D001384 ORTHO05D001215 2.1e-06 55.8 35 77.1
SalBow1G7997 Salvia bowleyana HOM05D001384 ORTHO05D001215 2.1e-06 55.8 35 77.1
CARHR189480 Cardamine hirsuta HOM05D001384 ORTHO05D001215 2.7e-06 55.5 28 96.4
Gohir.D11G023500 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.7e-06 55.5 36 77.8
Mapoly0079s0002 Marchantia polymorpha HOM05D001384 ORTHO05D001215 2.7e-06 55.5 36 69.4
SEGI_03889 Sequoiadendron giganteum HOM05D001384 ORTHO05D001215 2.7e-06 55.5 89 44.9
SEGI_03997 Sequoiadendron giganteum HOM05D001384 ORTHO05D001215 2.7e-06 55.5 89 44.9
unitig_899.g14812 Utricularia gibba HOM05D001384 ORTHO05D001215 2.7e-06 55.5 38 76.3
Duzib068G0580 Durio zibethinus HOM05D001384 ORTHO05D001215 3.6e-06 55.1 80 48.8
HanXRQChr04g0121001 Helianthus annuus HOM05D001384 ORTHO05D001215 3.6e-06 55.1 80 45.0
Gorai.008G252400 Gossypium raimondii HOM05D001384 ORTHO05D001215 4.6e-06 54.7 74 52.7
Lj1g0015216 Lotus japonicus HOM05D001384 ORTHO05D001215 4.6e-06 54.7 78 47.4
unitig_736.g22817 Utricularia gibba HOM05D001384 ORTHO05D001215 4.6e-06 54.7 38 71.1
AagrBONN_evm.TU.Sc2ySwM_117.409 Anthoceros agrestis HOM05D001384 ORTHO05D001215 6.1e-06 54.3 71 47.9
Gohir.D12G235700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 6.1e-06 54.3 74 51.4
Mapoly0024s0017 Marchantia polymorpha HOM05D001384 ORTHO05D001215 6.1e-06 54.3 35 74.3
Phvul.002G296000 Phaseolus vulgaris HOM05D001384 ORTHO05D001215 6.1e-06 54.3 88 40.9
Lj4g0006841 Lotus japonicus HOM05D001384 ORTHO05D001215 7.9e-06 53.9 82 47.6
Phvul.006G110400 Phaseolus vulgaris HOM05D001384 ORTHO05D001215 7.9e-06 53.9 81 48.1
Psat7g027760 Pisum sativum HOM05D001384 ORTHO05D001215 7.9e-06 53.9 79 44.3
Sed0009789 Sechium edule HOM05D001384 ORTHO05D001215 7.9e-06 53.9 78 44.9


User provided reference genes

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