Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 9.8e-175 616.7 310 100.0
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 6.0e-124 448.0 346 72.3
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 1.9e-117 426.4 344 68.0
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 1.3e-99 367.1 344 61.6
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 1.9e-98 363.2 347 57.3
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 2.5e-98 362.8 345 61.2
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 3.3e-98 362.5 345 60.6
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 2.6e-95 352.8 347 57.1
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 4.7e-92 342.0 347 55.0
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 7.9e-92 341.3 347 54.8
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 1.0e-91 340.9 348 55.5
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 1.0e-91 340.9 348 55.5
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 8.8e-91 337.8 347 54.5
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 1.7e-89 333.6 347 55.6
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 2.4e-88 329.7 347 52.7
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 1.5e-87 327.0 348 54.3
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 2.0e-87 326.6 346 52.9
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 4.5e-87 325.5 347 55.3
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 1.7e-86 323.6 346 54.0
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 2.2e-86 323.2 347 53.3
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.5e-86 321.6 345 55.7
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.4e-85 320.5 345 55.7
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.9e-85 320.1 345 55.4
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.9e-85 320.1 345 55.4
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 3.2e-85 319.3 342 53.5
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 4.2e-85 318.9 346 53.2
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 4.2e-85 318.9 347 52.7
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.5e-85 318.5 345 55.4
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 1.2e-84 317.4 347 52.4
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 1.6e-84 317.0 348 54.6
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 2.7e-84 316.2 346 51.7
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 6.1e-84 315.1 345 53.6
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 8.0e-84 314.7 346 51.2
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 1.0e-83 314.3 346 51.7
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 2.3e-83 313.2 345 53.9
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 2.3e-83 313.2 346 50.6
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 3.0e-83 312.8 346 51.4
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 3.0e-83 312.8 348 53.2
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 3.9e-83 312.4 349 51.3
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 6.7e-83 311.6 348 51.4
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 8.8e-83 311.2 346 52.3
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 2.0e-82 310.1 326 52.8
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 2.6e-82 309.7 346 52.0
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 3.3e-82 309.3 348 51.4
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 5.7e-82 308.5 347 51.3
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.3e-81 307.4 346 54.0
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 1.3e-81 307.4 345 51.6
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 1.7e-81 307.0 347 51.0
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 4.8e-81 305.4 346 51.4
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 4.8e-81 305.4 345 51.6
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 6.3e-81 305.1 348 50.9
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 8.2e-81 304.7 348 51.1
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 1.8e-80 303.5 346 52.3
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 1.8e-80 303.5 345 51.9
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 4.1e-80 302.4 345 50.1
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 4.1e-80 302.4 345 51.0
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 2.6e-79 299.7 346 50.3
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 4.5e-79 298.9 354 50.3
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 7.7e-79 298.1 340 50.6
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 7.7e-79 298.1 346 50.0
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 7.7e-79 298.1 354 50.3
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 6.5e-78 295.0 346 51.2
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 6.5e-78 295.0 342 49.4
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.1e-77 294.3 347 49.3
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 1.5e-77 293.9 347 48.7
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 1.5e-77 293.9 347 48.7
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 1.9e-77 293.5 348 48.6
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 4.2e-77 292.4 345 50.1
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 9.4e-77 291.2 346 47.4
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 1.2e-76 290.8 348 47.7
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 2.7e-76 289.7 348 48.3
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 2.7e-76 289.7 349 50.1
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 3.6e-76 289.3 348 48.0
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 3.6e-76 289.3 349 49.6
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 4.7e-76 288.9 347 49.3
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 6.1e-76 288.5 346 47.4
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 5.2e-75 285.4 345 47.2
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 5.2e-75 285.4 347 49.0
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 6.7e-75 285.0 344 49.4
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 1.2e-74 284.3 337 50.1
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 1.5e-74 283.9 344 49.1
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 1.5e-74 283.9 344 49.1
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 3.3e-74 282.7 347 47.0
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 2.2e-73 280.0 346 46.0
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 2.2e-73 280.0 347 45.8
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 6.3e-73 278.5 333 49.8
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.4e-72 277.3 351 49.6
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 1.8e-72 276.9 346 48.6
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 4.1e-72 275.8 351 47.0
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 5.3e-72 275.4 351 48.7
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 9.1e-72 274.6 351 46.7
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 2.9e-70 269.6 345 45.5
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 1.5e-69 267.3 348 45.7
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 1.6e-68 263.8 340 45.9
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 1.6e-68 263.8 343 46.6
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 4.7e-68 262.3 338 45.9
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 6.1e-68 261.9 333 45.9
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 8.8e-67 258.1 318 49.1
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 8.8e-67 258.1 326 50.0
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 1.2e-66 257.7 314 49.7
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 5.4e-64 248.8 348 43.7
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 2.7e-63 246.5 348 44.0
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 1.7e-62 243.8 344 43.0
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 3.8e-62 242.7 348 44.0
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 6.1e-60 235.3 334 44.6
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 6.8e-59 231.9 325 43.4
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 5.0e-54 215.7 349 39.5
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.1e-53 214.5 350 39.7
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 2.1e-52 210.3 350 38.6
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 2.7e-47 193.4 212 50.0
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 3.6e-44 183.0 346 36.1
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 6.2e-44 182.2 273 43.6
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 6.4e-41 172.2 215 45.6
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 5.4e-40 169.1 210 46.7
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 9.2e-40 168.3 259 40.5
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 1.2e-39 167.9 343 33.5
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 9.5e-37 158.3 322 35.7
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 1.2e-36 157.9 332 36.7
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 4.7e-36 156.0 322 35.1
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 8.1e-36 155.2 264 41.3
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 1.8e-35 154.1 113 71.7
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 1.8e-35 154.1 118 66.1
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 8.9e-35 151.8 100 75.0
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 3.4e-34 149.8 347 30.8
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 1.9e-32 144.1 365 30.1
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 1.2e-31 141.4 95 73.7
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.6e-31 141.0 100 71.0
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 6.0e-31 139.0 342 30.1
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 1.7e-30 137.5 205 47.3
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 1.6e-28 131.0 115 55.7
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 8.1e-28 128.6 168 49.4
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 1.3e-25 121.3 114 57.0
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 1.6e-23 114.4 193 40.9
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 5.8e-18 95.9 85 60.0
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 4.9e-17 92.8 141 41.8
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 3.2e-16 90.1 91 56.0
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 3.3e-13 80.1 158 32.3
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 9.6e-13 78.6 122 43.4
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 1.1e-11 75.1 165 32.7
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 2.6e-10 70.5 229 29.3
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 1.1e-08 65.1 83 44.6
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 1.6e-07 61.2 173 27.2
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 2.1e-07 60.8 44 59.1


User provided reference genes

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