Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 0.0e+00 1324.7 769 100.0
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 2.0e-293 1012.3 771 81.7
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 9.6e-264 913.7 789 71.2
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 7.9e-258 894.0 779 69.2
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.8e-254 882.9 778 68.1
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 1.9e-251 872.8 778 68.3
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.7e-250 869.0 778 68.0
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.8e-246 856.3 778 66.8
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.2e-245 853.6 778 66.5
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 4.5e-245 851.7 802 65.7
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 6.1e-234 814.7 797 63.0
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 5.3e-230 801.6 798 61.3
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 2.1e-226 789.6 786 63.4
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 3.6e-226 788.9 796 61.6
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 1.0e-225 787.3 794 61.5
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 2.3e-225 786.2 785 63.3
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 9.7e-224 780.8 787 63.0
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 8.5e-220 767.7 802 62.3
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 4.7e-218 761.9 794 58.7
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 9.7e-216 754.2 785 59.5
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.3e-212 743.8 783 58.9
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 2.2e-212 743.0 784 59.1
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 2.5e-211 739.6 789 58.3
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 2.3e-209 733.0 793 59.0
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 3.4e-208 729.2 790 58.1
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 6.3e-207 724.9 795 57.0
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 2.9e-204 716.1 791 56.9
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 2.8e-202 709.5 829 56.0
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 1.5e-200 703.7 793 55.4
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 1.4e-198 697.2 797 55.2
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 1.7e-196 690.3 812 53.6
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 1.0e-193 681.0 798 55.1
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 2.3e-193 679.9 822 53.8
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 5.2e-193 678.7 801 55.6
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.2e-192 677.6 783 58.5
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 2.0e-192 676.8 786 58.1
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 3.4e-192 676.0 798 54.4
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 3.4e-192 676.0 807 54.9
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 3.7e-191 672.5 799 55.4
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 3.2e-190 669.5 794 53.1
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 5.4e-190 668.7 806 56.6
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 3.5e-189 666.0 801 54.7
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 4.6e-189 665.6 767 56.3
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 9.5e-187 657.9 797 54.2
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 6.2e-186 655.2 734 57.8
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 1.8e-185 653.7 776 54.9
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 7.5e-184 648.3 804 52.9
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 1.4e-182 644.0 768 58.2
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 1.9e-182 643.7 774 55.8
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.0e-180 637.9 944 47.1
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 1.0e-180 637.9 786 52.3
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 1.7e-180 637.1 774 55.9
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 3.0e-180 636.3 822 51.7
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 3.9e-180 636.0 787 52.2
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 1.9e-179 633.6 804 51.6
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 2.5e-179 633.3 805 54.0
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 9.5e-179 631.3 779 52.0
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 1.1e-177 627.9 606 64.0
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 3.1e-177 626.3 606 63.9
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 1.5e-176 624.0 836 49.8
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.3e-175 620.9 784 55.4
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 1.7e-175 620.5 858 50.7
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 1.4e-174 617.5 797 54.2
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 1.2e-173 614.4 779 56.1
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 6.0e-173 612.1 786 51.3
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 9.5e-171 604.7 797 50.4
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 1.2e-170 604.4 784 51.7
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 2.8e-170 603.2 788 51.8
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 6.2e-170 602.1 789 51.5
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 2.4e-169 600.1 785 53.0
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 1.5e-168 597.4 706 54.1
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 2.6e-168 596.7 794 54.2
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 5.8e-168 595.5 786 52.9
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 9.9e-168 594.7 790 52.9
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 1.7e-167 594.0 812 52.3
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 1.7e-167 594.0 790 49.7
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 6.4e-167 592.0 786 52.2
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 1.1e-166 591.3 784 53.8
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 1.4e-166 590.9 803 52.1
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 4.7e-162 575.9 821 51.0
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 5.8e-160 568.9 790 51.8
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 3.2e-158 563.1 820 49.1
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 7.1e-158 562.0 800 50.6
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 7.8e-157 558.5 786 49.7
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 8.7e-156 555.1 627 56.0
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 3.6e-154 549.7 610 59.0
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 6.2e-154 548.9 777 49.9
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 2.6e-152 543.5 804 50.2
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 1.1e-150 538.1 812 46.8
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 3.2e-150 536.6 788 50.9
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 4.6e-149 532.7 701 52.8
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 6.0e-149 532.3 786 48.2
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 5.1e-148 529.3 785 45.0
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 1.1e-147 528.1 786 45.9
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 4.3e-147 526.2 793 48.9
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 3.8e-143 513.1 789 47.3
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 5.5e-142 509.2 747 47.9
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 9.3e-142 508.4 529 59.7
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 1.6e-141 507.7 788 44.9
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 1.6e-141 507.7 788 44.9
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 1.6e-141 507.7 788 44.9
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 4.6e-141 506.1 699 50.6
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 6.7e-140 502.3 787 45.1
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 8.7e-140 501.9 787 45.0
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 1.5e-139 501.1 787 44.9
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 2.5e-139 500.4 802 48.3
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 5.6e-139 499.2 781 45.8
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 1.3e-138 498.0 787 46.9
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 1.4e-137 494.6 798 44.9
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 1.8e-137 494.2 793 48.0
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 2.0e-136 490.7 787 47.9
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 6.5e-135 485.7 781 45.7
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 1.0e-132 478.4 779 43.1
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 3.9e-132 476.5 777 43.4
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 1.1e-131 474.9 785 43.9
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 1.9e-131 474.2 493 58.8
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.4e-129 468.0 780 42.9
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 2.4e-129 467.2 790 42.7
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 3.4e-128 463.4 790 42.2
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 8.5e-127 458.8 787 45.9
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 1.8e-124 451.1 784 43.6
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 1.5e-123 448.0 783 44.7
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 8.2e-122 442.2 655 46.1
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 2.6e-120 437.2 779 41.1
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 6.5e-119 432.6 771 42.0
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 1.4e-118 431.4 778 44.3
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 3.6e-117 426.8 764 42.4
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 1.0e-116 425.2 848 40.1
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 1.8e-116 424.5 789 41.1
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 4.1e-113 413.3 744 44.1
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 3.4e-112 410.2 706 43.8
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 5.5e-110 402.9 599 46.6
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 2.0e-99 367.9 490 48.6
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 3.7e-98 363.6 383 60.1
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 1.9e-94 351.3 704 39.6
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 4.4e-91 340.1 386 54.9
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 3.1e-89 334.0 337 58.8
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 5.9e-88 329.7 865 34.9
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 3.0e-76 290.8 387 50.1
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 1.4e-65 255.4 359 48.7
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.3e-62 244.2 401 45.4
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 7.3e-62 243.0 339 49.6
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 7.5e-59 233.0 311 46.6
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 7.1e-57 226.5 251 56.2
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 3.6e-53 214.2 704 31.0
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 3.2e-49 201.1 352 44.3
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 3.0e-47 194.5 194 60.3
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 1.7e-42 178.7 313 39.0
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 3.8e-42 177.6 145 64.1
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 3.1e-36 157.9 175 56.6
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 2.0e-35 155.2 138 63.0
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 2.4e-33 148.3 183 54.6
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 1.7e-26 125.6 273 39.2
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 2.9e-26 124.8 106 66.0
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 1.3e-23 115.9 120 55.8
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 6.5e-18 97.1 181 42.0
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.8e-15 89.0 85 58.8
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 1.5e-14 85.9 304 29.3
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 1.5e-14 85.9 362 26.8
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 2.4e-12 78.6 276 31.9
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 2.4e-12 78.6 87 55.2
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 1.3e-10 72.8 233 33.0
Actinidia10077 Actinidia chinensis HOM05D003721 ORTHO05D004303 5.5e-09 67.4 151 41.7
Rhsim05G0209700 Rhododendron simsii HOM05D003721 ORTHO05D004303 3.6e-08 64.7 74 44.6
Rhsim11G0030600 Rhododendron simsii HOM05D003721 ORTHO05D004303 4.6e-08 64.3 74 45.9
arahy.Tifrunner.gnm1.ann1.B4ZXCR Arachis hypogaea HOM05D003721 ORTHO05D004303 1.8e-07 62.4 68 55.9
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.1e-06 59.7 463 25.1
arahy.Tifrunner.gnm1.ann1.EAH0NM Arachis hypogaea HOM05D003721 ORTHO05D004303 1.5e-06 59.3 66 54.5
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 2.0e-06 58.9 45 71.1
arahy.Tifrunner.gnm1.ann1.TR1UXP Arachis hypogaea HOM05D003721 ORTHO05D004303 3.3e-06 58.2 66 54.5
arahy.Tifrunner.gnm1.ann1.4H30G8 Arachis hypogaea HOM05D003721 ORTHO05D004303 9.7e-06 56.6 66 53.0
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 9.7e-06 56.6 246 28.9


User provided reference genes

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