Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1129300 Malus domestica HOM05D007493 ORTHO05D009465 2.6e-46 188.3 93 100.0
MD03G1151700 Malus domestica HOM05D007493 ORTHO05D009465 1.2e-11 73.2 37 91.9
MD15G1332800 Malus domestica HOM05D007493 ORTHO05D009465 3.9e-10 68.2 36 86.1
Atru.chr11.2184 Acer truncatum HOM05D007493 ORTHO05D009465 4.8e-08 61.2 36 83.3
Aqoxy5G03641 Aquilegia oxysepala HOM05D007493 ORTHO05D009465 4.8e-08 61.2 38 78.9
Hma1.2p1_0079F.1_g041210 Hydrangea macrophylla HOM05D007493 ORTHO05D009465 4.8e-08 61.2 36 83.3
Lj4g0017514 Lotus japonicus HOM05D007493 ORTHO05D009465 4.8e-08 61.2 38 78.9
MD06G1161100 Malus domestica HOM05D007493 ORTHO05D009465 4.8e-08 61.2 38 78.9
MD14G1166500 Malus domestica HOM05D007493 ORTHO05D009465 4.8e-08 61.2 38 78.9
Prupe.5G160800 Prunus persica HOM05D007493 ORTHO05D009465 4.8e-08 61.2 38 78.9
Atru.BG.141.p Acer truncatum HOM05D007493 ORTHO05D009465 6.2e-08 60.8 36 80.6
Atru.chr2.2324 Acer truncatum HOM05D007493 ORTHO05D009465 6.2e-08 60.8 36 80.6
CSS0003793 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 6.2e-08 60.8 38 76.3
Dinv11035 Davidia involucrata HOM05D007493 ORTHO05D009465 6.2e-08 60.8 39 71.8
arahy.Tifrunner.gnm1.ann1.48Y6QT Arachis hypogaea HOM05D007493 ORTHO05D009465 8.1e-08 60.5 36 80.6
arahy.Tifrunner.gnm1.ann1.SE4B7G Arachis hypogaea HOM05D007493 ORTHO05D009465 8.1e-08 60.5 36 80.6
MBI10_g16722_MAGBIO Magnolia biondii HOM05D007493 ORTHO05D009465 8.1e-08 60.5 34 76.5
COL.COLO4_23524 Corchorus olitorius HOM05D007493 ORTHO05D009465 1.1e-07 60.1 36 80.6
Duzib251G0942 Durio zibethinus HOM05D007493 ORTHO05D009465 1.1e-07 60.1 36 80.6
Nn3g16632 Nelumbo nucifera HOM05D007493 ORTHO05D009465 1.1e-07 60.1 32 81.2
RcHm_v2.0_Chr7g0191781 Rosa chinensis HOM05D007493 ORTHO05D009465 1.1e-07 60.1 38 76.3
Thecc.02G266500 Theobroma cacao HOM05D007493 ORTHO05D009465 1.1e-07 60.1 36 80.6
Duzib248G1419 Durio zibethinus HOM05D007493 ORTHO05D009465 1.4e-07 59.7 36 80.6
PSO063G3855 Papaver somniferum HOM05D007493 ORTHO05D009465 1.4e-07 59.7 38 76.3
Manes.12G019900 Manihot esculenta HOM05D007493 ORTHO05D009465 1.8e-07 59.3 36 77.8
Manes.13G020200 Manihot esculenta HOM05D007493 ORTHO05D009465 1.8e-07 59.3 36 77.8
Lalb_Chr07g0185531 Lupinus albus HOM05D007493 ORTHO05D009465 2.4e-07 58.9 38 73.7
TAR622G0701 Trochodendron aralioides HOM05D007493 ORTHO05D009465 2.4e-07 58.9 32 81.2
Zm00001eb365410 Zea mays HOM05D007493 ORTHO05D009465 2.4e-07 58.9 39 69.2
CSS0017909 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 3.1e-07 58.5 35 80.0
Glyma.05G172800 Glycine max HOM05D007493 ORTHO05D009465 3.1e-07 58.5 36 80.6
Glyma.08G130200 Glycine max HOM05D007493 ORTHO05D009465 3.1e-07 58.5 36 80.6
Nn4g22523 Nelumbo nucifera HOM05D007493 ORTHO05D009465 3.1e-07 58.5 32 78.1
CANSAT01G0706 Cannabis sativa HOM05D007493 ORTHO05D009465 4.0e-07 58.2 38 73.7
Os01g0908400 Oryza sativa ssp. japonica HOM05D007493 ORTHO05D009465 4.0e-07 58.2 36 77.8
Lalb_Chr12g0204101 Lupinus albus HOM05D007493 ORTHO05D009465 5.3e-07 57.8 38 71.1
PSO067G0033 Papaver somniferum HOM05D007493 ORTHO05D009465 5.3e-07 57.8 36 77.8
ATR0824G181 Amborella trichopoda HOM05D007493 ORTHO05D009465 9.0e-07 57.0 36 75.0
Cpa.g.sc33.74 Carica papaya HOM05D007493 ORTHO05D009465 9.0e-07 57.0 32 75.0
Gorai.002G189100 Gossypium raimondii HOM05D007493 ORTHO05D009465 9.0e-07 57.0 32 78.1
Medtr8g089640 Medicago truncatula HOM05D007493 ORTHO05D009465 9.0e-07 57.0 38 73.7
HPP92_009922 Vanilla planifolia HOM05D007493 ORTHO05D009465 9.0e-07 57.0 34 70.6
Gohir.D01G152700 Gossypium hirsutum HOM05D007493 ORTHO05D009465 1.2e-06 56.6 46 60.9
Manes.06G112900 Manihot esculenta HOM05D007493 ORTHO05D009465 1.2e-06 56.6 36 75.0
ClCG08G017580 Citrullus lanatus HOM05D007493 ORTHO05D009465 1.5e-06 56.2 50 60.0
TWI36G0140 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 1.5e-06 56.2 32 75.0
Aa31LG4G12320 Aethionema arabicum HOM05D007493 ORTHO05D009465 2.0e-06 55.8 38 71.1
MELO3C010701.2 Cucumis melo HOM05D007493 ORTHO05D009465 2.6e-06 55.5 36 75.0
CsaV3_2G025040 Cucumis sativus L. HOM05D007493 ORTHO05D009465 2.6e-06 55.5 36 75.0
Migut.K00631 Erythranthe guttata HOM05D007493 ORTHO05D009465 2.6e-06 55.5 36 72.2
Manes.14G056800 Manihot esculenta HOM05D007493 ORTHO05D009465 2.6e-06 55.5 36 72.2
Phvul.002G252800 Phaseolus vulgaris HOM05D007493 ORTHO05D009465 2.6e-06 55.5 34 70.6
TWI18G0390 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 2.6e-06 55.5 32 71.9
AL2G26520 Arabidopsis lyrata HOM05D007493 ORTHO05D009465 3.4e-06 55.1 38 71.1
AT1G67785 Arabidopsis thaliana HOM05D007493 ORTHO05D009465 3.4e-06 55.1 38 71.1
BcaB03g15163 Brassica carinata HOM05D007493 ORTHO05D009465 3.4e-06 55.1 38 71.1
BcaB05g24314 Brassica carinata HOM05D007493 ORTHO05D009465 3.4e-06 55.1 38 71.1
BcaC03g14872 Brassica carinata HOM05D007493 ORTHO05D009465 3.4e-06 55.1 38 71.1
BcaC08g46034 Brassica carinata HOM05D007493 ORTHO05D000035 3.4e-06 55.1 38 71.1
BcaC08g46204 Brassica carinata HOM05D001456 ORTHO05D009465 3.4e-06 55.1 38 71.1
A02p14480 Brassica napus HOM05D007493 ORTHO05D009465 3.4e-06 55.1 38 71.1
A07p32370 Brassica napus HOM05D007493 ORTHO05D009465 3.4e-06 55.1 38 71.1
C02p23440 Brassica napus HOM05D007493 ORTHO05D009465 3.4e-06 55.1 38 71.1
C06p38280 Brassica napus HOM05D007493 ORTHO05D009465 3.4e-06 55.1 38 71.1
C06p42230 Brassica napus HOM05D007493 ORTHO05D009465 3.4e-06 55.1 38 71.1
BolC2t08476H Brassica oleracea HOM05D007493 ORTHO05D009465 3.4e-06 55.1 38 71.1
BraA02t06512Z Brassica rapa HOM05D007493 ORTHO05D009465 3.4e-06 55.1 38 71.1
BraA07t30860Z Brassica rapa HOM05D007493 ORTHO05D009465 3.4e-06 55.1 38 71.1
BraA07t31062Z Brassica rapa HOM05D007493 ORTHO05D009465 3.4e-06 55.1 38 71.1
Carub.0002s1423 Capsella rubella HOM05D007493 ORTHO05D009465 3.4e-06 55.1 38 71.1
CARHR060410 Cardamine hirsuta HOM05D007493 ORTHO05D009465 3.4e-06 55.1 38 71.1
Cfa009257 Carpinus fangiana HOM05D007493 ORTHO05D009465 3.4e-06 55.1 36 69.4
CiPaw.05G177500 Carya illinoinensis HOM05D007493 ORTHO05D009465 3.4e-06 55.1 36 69.4
Haze_12286 Corylus avellana HOM05D007493 ORTHO05D009465 3.4e-06 55.1 36 69.4
Thhalv10019416m.g Eutrema salsugineum HOM05D007493 ORTHO05D009465 3.4e-06 55.1 38 71.1
Lsat_1_v5_gn_3_30001 Lactuca sativa HOM05D007493 ORTHO05D009465 3.4e-06 55.1 35 65.7
Lsat_1_v5_gn_4_3821 Lactuca sativa HOM05D007493 ORTHO05D009465 3.4e-06 55.1 35 65.7
Nitab4.5_0000041g0060 Nicotiana tabacum HOM05D007493 ORTHO05D009465 3.4e-06 55.1 38 65.8
Nitab4.5_0013418g0010 Nicotiana tabacum HOM05D007493 ORTHO05D009465 3.4e-06 55.1 38 65.8
Peaxi162Scf00128g00547 Petunia axillaris HOM05D007493 ORTHO05D009465 3.4e-06 55.1 38 65.8
Sc11g0000840 Simmondsia chinensis HOM05D007493 ORTHO05D009465 3.4e-06 55.1 36 69.4
Ciclev10033289m.g Citrus clementina HOM05D007493 ORTHO05D009465 4.4e-06 54.7 38 68.4
Gohir.A12G145600 Gossypium hirsutum HOM05D007493 ORTHO05D009465 4.4e-06 54.7 36 69.4
Gohir.D12G150200 Gossypium hirsutum HOM05D007493 ORTHO05D009465 4.4e-06 54.7 36 69.4
Gorai.008G161700 Gossypium raimondii HOM05D007493 ORTHO05D009465 4.4e-06 54.7 36 69.4
HanXRQChr12g0385761 Helianthus annuus HOM05D007493 ORTHO05D009465 4.4e-06 54.7 33 69.7
THA.LOC104825545 Tarenaya hassleriana HOM05D007493 ORTHO05D009465 5.8e-06 54.3 36 72.2
HanXRQChr17g0569621 Helianthus annuus HOM05D007493 ORTHO05D009465 7.6e-06 53.9 33 66.7
Sed0018590 Sechium edule HOM05D007493 ORTHO05D009465 7.6e-06 53.9 38 68.4
Solyc05g013905.1 Solanum lycopersicum HOM05D007493 ORTHO05D009465 7.6e-06 53.9 36 66.7
PGSC0003DMG400010781 Solanum tuberosum HOM05D007493 ORTHO05D009465 7.6e-06 53.9 38 63.2


User provided reference genes

Program Settings