Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 1.3e-182 642.9 326 100.0
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 6.1e-151 537.7 326 84.7
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.8e-148 528.1 319 83.7
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 4.8e-148 528.1 319 83.4
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 6.3e-148 527.7 319 83.4
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.4e-147 525.8 319 83.4
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.4e-147 525.8 319 83.4
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 3.1e-147 525.4 319 83.7
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.8e-145 518.5 319 82.8
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 2.1e-143 512.7 321 81.3
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 5.7e-141 504.6 321 78.5
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 7.2e-136 487.6 319 78.1
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 7.2e-136 487.6 362 70.7
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 4.7e-135 485.0 326 74.5
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 4.7e-135 485.0 322 76.1
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.4e-134 483.4 326 74.2
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 5.2e-134 481.5 322 74.8
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 1.5e-133 479.9 321 75.7
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 1.5e-133 479.9 322 75.2
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 1.5e-133 479.9 325 74.8
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 3.3e-133 478.8 324 73.8
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 9.7e-133 477.2 324 75.0
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 3.7e-132 475.3 324 74.7
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 1.1e-131 473.8 323 74.0
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 1.1e-131 473.8 328 72.6
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 1.4e-131 473.4 320 75.9
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 2.2e-129 466.1 325 73.8
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 2.9e-129 465.7 324 71.0
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 8.5e-129 464.2 329 71.1
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 1.5e-128 463.4 322 72.4
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 1.9e-128 463.0 320 71.2
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 2.5e-128 462.6 323 71.8
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 2.5e-128 462.6 325 69.5
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 3.2e-128 462.2 325 69.5
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 9.4e-128 460.7 329 70.5
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 1.2e-127 460.3 319 75.2
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.2e-127 460.3 327 71.6
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 2.7e-127 459.1 322 73.6
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 2.7e-127 459.1 325 68.9
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 4.7e-127 458.4 325 72.6
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 4.7e-127 458.4 327 69.4
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 8.0e-127 457.6 322 73.3
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 1.8e-126 456.4 321 72.0
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.8e-126 456.4 322 73.6
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 2.3e-126 456.1 329 69.3
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 6.8e-126 454.5 319 74.3
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 8.8e-126 454.1 325 69.2
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 2.0e-125 453.0 323 72.8
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 2.0e-125 453.0 325 70.2
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 2.2e-124 449.5 327 67.9
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 4.8e-124 448.4 331 69.2
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 6.3e-124 448.0 324 68.5
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 1.1e-123 447.2 261 85.4
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 1.8e-123 446.4 320 71.2
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 3.1e-123 445.7 322 68.6
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 4.1e-123 445.3 316 69.9
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 4.1e-123 445.3 322 67.1
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 1.6e-122 443.4 318 70.1
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 2.0e-122 443.0 316 69.0
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 2.7e-122 442.6 317 69.7
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 2.7e-122 442.6 327 68.8
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 4.5e-122 441.8 325 68.3
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 4.5e-122 441.8 312 70.8
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 7.7e-122 441.0 322 66.5
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 1.3e-121 440.3 323 67.8
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 1.7e-121 439.9 320 69.1
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 2.3e-121 439.5 323 68.7
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 2.3e-121 439.5 321 66.7
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 2.9e-121 439.1 326 66.6
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 8.6e-121 437.6 325 68.0
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 1.1e-120 437.2 321 70.1
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 1.9e-120 436.4 321 66.7
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 1.9e-120 436.4 321 70.1
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 2.5e-120 436.0 381 58.8
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 7.2e-120 434.5 329 66.6
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 7.2e-120 434.5 346 65.0
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 9.5e-120 434.1 319 68.0
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 1.6e-119 433.3 329 66.3
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 2.1e-119 433.0 325 69.2
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 2.8e-119 432.6 328 66.2
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 6.1e-119 431.4 321 66.0
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 1.4e-118 430.3 323 67.2
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 1.8e-118 429.9 329 66.0
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 1.8e-118 429.9 329 65.7
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 4.4e-117 425.2 295 72.9
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 2.8e-116 422.5 323 66.6
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 3.7e-116 422.2 313 69.3
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 8.3e-116 421.0 341 63.3
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 1.4e-115 420.2 346 65.0
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 7.0e-115 417.9 312 65.4
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 2.0e-114 416.4 242 88.0
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 2.7e-114 416.0 283 72.4
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 4.5e-114 415.2 324 65.7
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 5.9e-114 414.8 320 63.8
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 4.7e-111 405.2 321 63.6
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 2.2e-108 396.4 230 87.8
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.1e-107 394.0 281 70.8
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 1.8e-107 393.3 299 65.9
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 4.1e-107 392.1 321 62.3
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 1.0e-105 387.5 244 78.7
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 3.0e-105 386.0 280 70.0
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 4.9e-100 368.6 239 79.9
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 1.5e-96 357.1 239 72.0
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 2.9e-92 342.8 235 72.8
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 1.2e-90 337.4 315 56.2
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 2.7e-90 336.3 242 76.9
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 6.6e-89 331.6 239 74.1
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 2.5e-88 329.7 203 81.3
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 4.3e-88 328.9 322 52.2
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 5.4e-83 312.0 241 64.3
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 1.7e-81 307.0 313 52.4
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 1.5e-80 303.9 243 64.2
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 1.1e-75 287.7 186 82.8
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 2.9e-68 263.1 194 67.0
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 1.2e-66 257.7 310 47.1
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.4e-62 244.2 195 64.1
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 4.2e-51 206.1 316 41.5
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 1.3e-49 201.1 131 74.0
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 4.3e-48 196.1 131 80.2
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 8.2e-47 191.8 327 39.8
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 4.6e-42 176.0 117 76.1
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.7e-39 167.5 108 78.7
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 5.9e-37 159.1 321 36.1
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 1.9e-35 154.1 111 71.2
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 9.4e-35 151.8 125 60.0
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 1.6e-34 151.0 112 66.1
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 1.6e-34 151.0 112 66.1
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 1.6e-34 151.0 112 66.1
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 7.2e-27 125.6 98 62.2
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 1.6e-26 124.4 90 65.6
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 2.1e-26 124.0 82 78.0
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 8.8e-25 118.6 80 77.5
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 4.1e-22 109.8 79 67.1
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 2.1e-18 97.4 55 83.6
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 4.0e-17 93.2 84 59.5
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 2.8e-15 87.0 64 68.8
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 2.8e-15 87.0 64 68.8
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 1.9e-11 74.3 57 57.9
arahy.Tifrunner.gnm1.ann1.G2MMRU Arachis hypogaea HOM05D005332 ORTHO05D006861 8.3e-07 58.9 49 65.3


User provided reference genes

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