Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 2.9e-76 288.5 147 100.0
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 1.7e-60 236.1 146 81.5
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 6.1e-50 201.1 146 70.5
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 1.0e-49 200.3 146 69.2
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 1.8e-49 199.5 146 67.8
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.8e-49 199.5 146 67.8
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 6.7e-49 197.6 146 66.4
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.6e-48 195.7 146 67.8
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.6e-48 195.7 146 67.8
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 3.7e-47 191.8 146 66.4
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.7e-47 191.8 146 66.4
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.7e-47 191.8 146 66.4
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 1.9e-43 179.5 145 62.1
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 1.7e-39 166.4 146 58.9
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 1.6e-37 159.8 145 55.2
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 2.9e-36 155.6 146 52.7
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 6.5e-36 154.5 146 56.8
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 8.5e-36 154.1 137 56.9
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 3.2e-35 152.1 139 56.8
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 4.2e-35 151.8 146 56.2
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 7.2e-35 151.0 125 60.8
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 9.4e-35 150.6 149 49.7
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 2.1e-34 149.4 146 51.4
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 2.7e-34 149.1 145 53.8
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 4.7e-34 148.3 146 53.4
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 1.0e-33 147.1 147 53.1
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 1.0e-33 147.1 146 54.1
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 1.4e-33 146.7 145 53.1
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 1.4e-33 146.7 148 51.4
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 3.0e-33 145.6 146 52.1
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 4.0e-33 145.2 147 53.1
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 4.0e-33 145.2 135 55.6
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 5.2e-33 144.8 136 53.7
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 5.2e-33 144.8 146 52.7
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 6.7e-33 144.4 137 51.8
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 1.2e-32 143.7 144 52.8
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 1.2e-32 143.7 145 51.0
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 1.5e-32 143.3 146 50.0
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.5e-32 143.3 145 51.0
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 1.5e-32 143.3 135 54.8
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 3.3e-32 142.1 146 52.7
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 7.5e-32 141.0 146 52.1
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 7.5e-32 141.0 139 53.2
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 1.7e-31 139.8 146 56.2
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 2.8e-31 139.0 145 51.7
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 2.8e-31 139.0 143 52.4
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 1.1e-30 137.1 153 49.0
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 4.1e-30 135.2 146 47.3
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 5.3e-30 134.8 146 47.3
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 1.6e-29 133.3 146 48.6
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 2.0e-29 132.9 146 47.9
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 2.0e-29 132.9 139 48.9
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 2.7e-29 132.5 146 44.5
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 2.7e-29 132.5 146 44.5
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 3.5e-29 132.1 147 44.2
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 5.9e-29 131.3 146 48.6
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 7.7e-29 131.0 137 51.1
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 1.7e-28 129.8 137 50.4
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 1.7e-28 129.8 145 49.0
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 1.7e-28 129.8 150 48.0
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 1.7e-28 129.8 145 47.6
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 2.2e-28 129.4 140 48.6
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 2.2e-28 129.4 137 48.9
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 5.0e-28 128.3 146 42.5
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 5.0e-28 128.3 138 50.7
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 5.0e-28 128.3 146 51.4
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 6.5e-28 127.9 137 50.4
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 8.5e-28 127.5 137 51.1
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 8.5e-28 127.5 145 47.6
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 8.5e-28 127.5 150 46.7
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 1.1e-27 127.1 143 46.9
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.5e-27 126.7 146 41.8
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.9e-27 126.3 145 45.5
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.9e-27 126.3 145 45.5
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 1.9e-27 126.3 146 47.3
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 2.5e-27 125.9 145 45.5
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 4.2e-27 125.2 143 46.2
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 4.2e-27 125.2 138 49.3
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 7.2e-27 124.4 137 51.1
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 9.4e-27 124.0 138 49.3
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 9.4e-27 124.0 138 49.3
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 9.4e-27 124.0 138 49.3
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 1.2e-26 123.6 139 48.9
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 1.6e-26 123.2 146 46.6
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 2.7e-26 122.5 140 47.1
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 4.7e-26 121.7 146 43.2
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 8.0e-26 120.9 132 47.7
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 1.0e-25 120.6 149 44.3
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 1.8e-25 119.8 137 50.4
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 3.0e-25 119.0 146 41.8
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 4.0e-25 118.6 137 46.7
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 4.0e-25 118.6 149 43.6
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 5.2e-25 118.2 137 48.9
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 5.2e-25 118.2 146 41.8
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 8.8e-25 117.5 142 43.0
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 1.5e-24 116.7 146 41.8
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 2.0e-24 116.3 146 42.5
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 2.6e-24 115.9 132 47.0
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 3.4e-24 115.5 147 42.2
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 4.4e-24 115.2 132 47.0
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 7.5e-24 114.4 133 48.1
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 9.8e-24 114.0 139 46.8
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.3e-23 113.6 137 44.5
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 2.2e-23 112.8 132 45.5
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 3.7e-23 112.1 135 47.4
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 4.8e-23 111.7 149 40.9
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 6.3e-23 111.3 129 47.3
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 5.4e-22 108.2 136 42.6
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 2.7e-21 105.9 137 41.6
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 3.5e-21 105.5 136 41.9
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 7.7e-21 104.4 127 44.1
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 5.0e-20 101.7 134 42.5
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 7.2e-19 97.8 69 66.7
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.3e-17 92.8 146 40.4
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 1.5e-16 90.1 144 32.6
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 3.7e-15 85.5 115 36.5
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 1.1e-14 84.0 66 57.6
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 3.1e-14 82.4 134 35.8
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 5.4e-14 81.6 113 39.8
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 1.2e-13 80.5 125 32.0
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 5.9e-13 78.2 82 50.0
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 5.9e-13 78.2 82 50.0
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 1.3e-12 77.0 114 41.2
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 5.0e-12 75.1 62 58.1
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 8.6e-12 74.3 117 42.7
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 1.2e-10 70.5 68 54.4
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 2.8e-10 69.3 143 32.2
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 2.8e-10 69.3 117 39.3
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 3.1e-09 65.9 65 50.8
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 1.3e-07 60.5 77 40.3
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.9e-06 56.6 153 30.1


User provided reference genes

Program Settings