Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1122900 Malus domestica HOM05D002700 ORTHO05D245792 6.5e-38 160.2 81 100.0
MD05G1067500 Malus domestica HOM05D002700 ORTHO05D003228 7.5e-10 67.0 62 62.9
MD10G1077500 Malus domestica HOM05D002700 ORTHO05D003228 7.5e-10 67.0 62 62.9
HanXRQChr16g0505781 Helianthus annuus HOM05D002700 ORTHO05D003228 1.6e-07 59.3 60 58.3
Prupe.8G098200 Prunus persica HOM05D002700 ORTHO05D003228 2.1e-07 58.9 44 75.0
HanXRQChr13g0410251 Helianthus annuus HOM05D002700 ORTHO05D003228 2.7e-07 58.5 60 56.7
ECA234G3376 Erigeron canadensis HOM05D002700 ORTHO05D003228 3.5e-07 58.2 60 56.7
ECA236G4911 Erigeron canadensis HOM05D002700 ORTHO05D003228 3.5e-07 58.2 60 58.3
ClCG02G005080 Citrullus lanatus HOM05D002700 ORTHO05D003228 4.6e-07 57.8 62 56.5
MELO3C012528.2 Cucumis melo HOM05D002700 ORTHO05D003228 4.6e-07 57.8 62 56.5
CsaV3_7G023500 Cucumis sativus L. HOM05D002700 ORTHO05D003228 4.6e-07 57.8 62 56.5
Lsat_1_v5_gn_7_89100 Lactuca sativa HOM05D002700 ORTHO05D003228 4.6e-07 57.8 60 56.7
GSVIVG01031955001 Vitis vinifera HOM05D002700 ORTHO05D003228 6.0e-07 57.4 88 46.6
EL10Ac9g21732 Beta vulgaris HOM05D002700 ORTHO05D003228 7.8e-07 57.0 44 70.5
Rhsim11G0176000 Rhododendron simsii HOM05D002700 ORTHO05D003228 7.8e-07 57.0 44 72.7
Migut.B00244 Erythranthe guttata HOM05D002700 ORTHO05D003228 1.0e-06 56.6 44 72.7
HanXRQChr10g0307221 Helianthus annuus HOM05D002700 ORTHO05D003228 1.0e-06 56.6 60 55.0
MSTRG.20088 Avicennia marina HOM05D002700 ORTHO05D003228 1.3e-06 56.2 44 70.5
FvH4_2g08660 Fragaria vesca HOM05D002700 ORTHO05D003228 1.3e-06 56.2 44 72.7
FAN15G2523 Fragaria x ananassa HOM05D002700 ORTHO05D003228 1.3e-06 56.2 44 72.7
FAN20G2199 Fragaria x ananassa HOM05D002700 ORTHO05D003228 1.3e-06 56.2 44 72.7
FAN24G0158 Fragaria x ananassa HOM05D002700 ORTHO05D003228 1.3e-06 56.2 44 72.7
FAN27G0087 Fragaria x ananassa HOM05D002700 ORTHO05D003228 1.3e-06 56.2 44 72.7
RcHm_v2.0_Chr6g0264051 Rosa chinensis HOM05D002700 ORTHO05D003228 1.3e-06 56.2 44 72.7
SGA_v2.0_scaffold58G20543 Striga asiatica HOM05D002700 ORTHO05D003228 1.3e-06 56.2 44 72.7
Gohir.D12G027900 Gossypium hirsutum HOM05D002700 ORTHO05D003228 1.7e-06 55.8 44 70.5
Gorai.008G028500 Gossypium raimondii HOM05D002700 ORTHO05D003228 1.7e-06 55.8 44 70.5
Hma1.2p1_1375F.1_g279015 Hydrangea macrophylla HOM05D002700 ORTHO05D003228 1.7e-06 55.8 44 70.5
Medtr3g116480 Medicago truncatula HOM05D002700 ORTHO05D003228 1.7e-06 55.8 44 68.2
Thecc.02G086300 Theobroma cacao HOM05D002700 ORTHO05D003228 1.7e-06 55.8 44 70.5
TPR.G38223 Trifolium pratense HOM05D002700 ORTHO05D003228 1.7e-06 55.8 44 68.2
arahy.Tifrunner.gnm1.ann1.3YZV7D Arachis hypogaea HOM05D002700 ORTHO05D003228 2.3e-06 55.5 44 68.2
arahy.Tifrunner.gnm1.ann1.993YRW Arachis hypogaea HOM05D002700 ORTHO05D003228 2.3e-06 55.5 44 68.2
Haze_02377 Corylus avellana HOM05D002700 ORTHO05D003228 2.3e-06 55.5 44 68.2
Hma1.2p1_0066F.1_g036480 Hydrangea macrophylla HOM05D002700 ORTHO05D003228 2.3e-06 55.5 44 70.5
Lj1g0025455 Lotus japonicus HOM05D002700 ORTHO05D003228 2.3e-06 55.5 44 68.2
Lalb_Chr03g0025741 Lupinus albus HOM05D002700 ORTHO05D003228 2.3e-06 55.5 44 68.2
Oeu020765.1 Olea europaea HOM05D002700 ORTHO05D003228 2.3e-06 55.5 88 47.7
PSO731G0142 Papaver somniferum HOM05D002700 ORTHO05D003228 2.3e-06 55.5 62 54.8
Sed0022985 Sechium edule HOM05D002700 ORTHO05D003228 2.3e-06 55.5 62 54.8
Aqoxy5G01658 Aquilegia oxysepala HOM05D002700 ORTHO05D003228 3.0e-06 55.1 44 68.2
Cfa005011 Carpinus fangiana HOM05D002700 ORTHO05D003228 3.0e-06 55.1 44 68.2
COL.COLO4_25920 Corchorus olitorius HOM05D002700 ORTHO05D003228 3.0e-06 55.1 44 68.2
Duzib132G0301 Durio zibethinus HOM05D002700 ORTHO05D003228 3.0e-06 55.1 59 57.6
Gohir.A13G034800 Gossypium hirsutum HOM05D002700 ORTHO05D003228 3.0e-06 55.1 44 68.2
Gohir.D13G033200 Gossypium hirsutum HOM05D002700 ORTHO05D003228 3.0e-06 55.1 44 68.2
Gorai.013G037600 Gossypium raimondii HOM05D002700 ORTHO05D003228 3.0e-06 55.1 44 68.2
Manes.17G100400 Manihot esculenta HOM05D002700 ORTHO05D003228 3.0e-06 55.1 88 44.3
Sabra09G0088200 Salix brachista HOM05D002700 ORTHO05D003228 3.0e-06 55.1 46 65.2
TAR628G1536 Trochodendron aralioides HOM05D002700 ORTHO05D003228 3.0e-06 55.1 44 68.2
CiPaw.05G063700 Carya illinoinensis HOM05D002700 ORTHO05D003228 3.9e-06 54.7 44 68.2
AUR62011332 Chenopodium quinoa HOM05D002700 ORTHO05D003228 3.9e-06 54.7 44 65.9
AUR62016729 Chenopodium quinoa HOM05D002700 ORTHO05D003228 3.9e-06 54.7 44 65.9
Lsat_1_v5_gn_5_118681 Lactuca sativa HOM05D002700 ORTHO05D003228 3.9e-06 54.7 60 53.3
PSO541G0977 Papaver somniferum HOM05D002700 ORTHO05D003228 3.9e-06 54.7 44 68.2
PSO675G3956 Papaver somniferum HOM05D002700 ORTHO05D003228 3.9e-06 54.7 44 68.2
TWI79G0506 Tripterygium wilfordii HOM05D002700 ORTHO05D003228 3.9e-06 54.7 53 62.3
TAR381G0184 Trochodendron aralioides HOM05D002700 ORTHO05D003228 3.9e-06 54.7 62 53.2
vmacro02114 Vaccinium macrocarpon HOM05D002700 ORTHO05D003228 3.9e-06 54.7 44 68.2
BolC1t00420H Brassica oleracea HOM05D002700 ORTHO05D003228 5.1e-06 54.3 44 65.9
Ca_15372_v3 Cicer arietinum L. HOM05D002700 ORTHO05D003228 5.1e-06 54.3 44 65.9
Cc02_g17650 Coffea canephora HOM05D002700 ORTHO05D003228 5.1e-06 54.3 62 54.8
Lalb_Chr01g0002591 Lupinus albus HOM05D002700 ORTHO05D003228 5.1e-06 54.3 44 65.9
Oeu029123.1 Olea europaea HOM05D002700 ORTHO05D003228 5.1e-06 54.3 44 68.2
Peaxi162Scf00016g00840 Petunia axillaris HOM05D002700 ORTHO05D003228 5.1e-06 54.3 44 65.9
Psat5g006120 Pisum sativum HOM05D002700 ORTHO05D003228 5.1e-06 54.3 44 65.9
Potri.004G153500 Populus trichocarpa HOM05D002700 ORTHO05D003228 5.1e-06 54.3 42 69.0
arahy.Tifrunner.gnm1.ann1.Z38ZL1 Arachis hypogaea HOM05D002700 ORTHO05D003228 6.6e-06 53.9 44 65.9
A01p03990 Brassica napus HOM05D002700 ORTHO05D003228 6.6e-06 53.9 44 65.9
A08p16800 Brassica napus HOM05D002700 ORTHO05D003228 6.6e-06 53.9 44 65.9
C03p85760 Brassica napus HOM05D002700 ORTHO05D003228 6.6e-06 53.9 44 65.9
BolC3t20867H Brassica oleracea HOM05D002700 ORTHO05D003228 6.6e-06 53.9 44 65.9
BraA01t00387Z Brassica rapa HOM05D002700 ORTHO05D003228 6.6e-06 53.9 44 65.9
BraA08t33645Z Brassica rapa HOM05D002700 ORTHO05D003228 6.6e-06 53.9 44 65.9
Dinv23531 Davidia involucrata HOM05D002700 ORTHO05D003228 6.6e-06 53.9 44 68.2
Duzib052G0952 Durio zibethinus HOM05D002700 ORTHO05D003228 6.6e-06 53.9 44 65.9
Duzib248G0028 Durio zibethinus HOM05D002700 ORTHO05D003228 6.6e-06 53.9 44 68.2
Eucgr.G00444 Eucalyptus grandis HOM05D002700 ORTHO05D003228 6.6e-06 53.9 44 65.9
Glyma.06G013100 Glycine max HOM05D002700 ORTHO05D003228 6.6e-06 53.9 44 65.9
PGR042G2246 Punica granatum HOM05D002700 ORTHO05D003228 6.6e-06 53.9 44 65.9
PGR042G3350 Punica granatum HOM05D002700 ORTHO05D003228 6.6e-06 53.9 44 65.9
Sp7g32250 Schrenkiella parvula HOM05D002700 ORTHO05D003228 6.6e-06 53.9 44 65.9
SGA_v2.0_scaffold13G06545 Striga asiatica HOM05D002700 ORTHO05D003228 6.6e-06 53.9 62 54.8
TWI31G0780 Tripterygium wilfordii HOM05D002700 ORTHO05D003228 6.6e-06 53.9 53 60.4
VMungo1309G2553 Vigna mungo HOM05D002700 ORTHO05D003228 6.6e-06 53.9 44 65.9
Atru.chr5.3002 Acer truncatum HOM05D002700 ORTHO05D003228 8.6e-06 53.5 44 68.2
Gohir.D02G215000 Gossypium hirsutum HOM05D002700 ORTHO05D003228 8.6e-06 53.5 44 65.9
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 8.6e-06 53.5 33 78.8
Manes.15G164100 Manihot esculenta HOM05D002700 ORTHO05D003228 8.6e-06 53.5 88 43.2
Phvul.009G024100 Phaseolus vulgaris HOM05D002700 ORTHO05D003228 8.6e-06 53.5 44 63.6


User provided reference genes

Program Settings