Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1119700 Malus domestica HOM05D003566 ORTHO05D249276 7.4e-53 210.3 109 100.0
FvH4_7g11530 Fragaria vesca HOM05D003566 ORTHO05D005288 1.1e-19 100.1 134 44.0
FAN01G1013 Fragaria x ananassa HOM05D003566 ORTHO05D005288 1.1e-19 100.1 132 43.9
FAN03G0287 Fragaria x ananassa HOM05D003566 ORTHO05D005288 1.8e-19 99.4 134 44.0
FAN06G2304 Fragaria x ananassa HOM05D003566 ORTHO05D005288 1.8e-19 99.4 134 44.0
FAN06G3189 Fragaria x ananassa HOM05D003566 ORTHO05D005288 1.8e-19 99.4 134 44.0
FAN10G1568 Fragaria x ananassa HOM05D003566 ORTHO05D005288 1.8e-19 99.4 134 44.0
FAN10G2501 Fragaria x ananassa HOM05D003566 ORTHO05D005288 1.8e-19 99.4 134 44.0
RcHm_v2.0_Chr1g0349971 Rosa chinensis HOM05D003566 ORTHO05D005288 1.8e-19 99.4 134 44.0
Duzib138G1163 Durio zibethinus HOM05D003566 ORTHO05D005288 3.1e-19 98.6 134 44.0
Duzib138G1849 Durio zibethinus HOM05D003566 ORTHO05D005288 3.1e-19 98.6 134 44.0
Prupe.2G143700 Prunus persica HOM05D003566 ORTHO05D005288 3.1e-19 98.6 134 44.0
COL.COLO4_12529 Corchorus olitorius HOM05D003566 ORTHO05D005288 9.2e-19 97.1 134 43.3
C04p71450 Brassica napus HOM05D003566 ORTHO05D005288 1.2e-18 96.7 131 44.3
Aqoxy7G00661 Aquilegia oxysepala HOM05D003566 ORTHO05D005288 2.0e-18 95.9 135 43.0
A03p25160 Brassica napus HOM05D003566 ORTHO05D005288 3.5e-18 95.1 131 43.5
A04p33720 Brassica napus HOM05D003566 ORTHO05D005288 3.5e-18 95.1 131 43.5
BolC4t28653H Brassica oleracea HOM05D003566 ORTHO05D005288 3.5e-18 95.1 131 43.5
BraA03t11716Z Brassica rapa HOM05D003566 ORTHO05D005288 3.5e-18 95.1 131 43.5
BraA04t18834Z Brassica rapa HOM05D003566 ORTHO05D005288 3.5e-18 95.1 131 43.5
Nn1g01139 Nelumbo nucifera HOM05D003566 ORTHO05D005288 3.5e-18 95.1 135 43.7
Sp4g27320 Schrenkiella parvula HOM05D003566 ORTHO05D005288 3.5e-18 95.1 131 43.5
AL1G55650 Arabidopsis lyrata HOM05D003566 ORTHO05D005288 4.5e-18 94.7 131 42.7
BolC3t15347H Brassica oleracea HOM05D003566 ORTHO05D005288 4.5e-18 94.7 131 42.7
Duzib133G0428 Durio zibethinus HOM05D003566 ORTHO05D005288 4.5e-18 94.7 134 42.5
Thhalv10001404m.g Eutrema salsugineum HOM05D003566 ORTHO05D005288 4.5e-18 94.7 131 42.7
Gorai.008G113600 Gossypium raimondii HOM05D003566 ORTHO05D005288 4.5e-18 94.7 134 42.5
Psat0s4330g0080 Pisum sativum HOM05D003566 ORTHO05D005288 4.5e-18 94.7 134 43.3
Carub.0004s2793 Capsella rubella HOM05D003566 ORTHO05D005288 5.9e-18 94.4 131 42.7
Gohir.A07G146300 Gossypium hirsutum HOM05D003566 ORTHO05D005288 5.9e-18 94.4 134 42.5
Gohir.D07G152400 Gossypium hirsutum HOM05D003566 ORTHO05D005288 5.9e-18 94.4 134 42.5
Gorai.001G174400 Gossypium raimondii HOM05D003566 ORTHO05D005288 5.9e-18 94.4 134 42.5
Gohir.A12G101500 Gossypium hirsutum HOM05D003566 ORTHO05D005288 7.8e-18 94.0 134 42.5
Sed0010249 Sechium edule HOM05D003566 ORTHO05D005288 7.8e-18 94.0 136 41.9
CARHR140500 Cardamine hirsuta HOM05D003566 ORTHO05D005288 1.0e-17 93.6 131 42.0
Hma1.2p1_0301F.1_g118610 Hydrangea macrophylla HOM05D003566 ORTHO05D005288 1.0e-17 93.6 134 42.5
MD02G1207300 Malus domestica HOM05D003566 ORTHO05D005288 1.0e-17 93.6 134 43.3
GSVIVG01027670001 Vitis vinifera HOM05D003566 ORTHO05D005288 1.0e-17 93.6 122 45.9
AT1G48860 Arabidopsis thaliana HOM05D003566 ORTHO05D005288 1.3e-17 93.2 131 42.0
C03p30000 Brassica napus HOM05D003566 ORTHO05D005288 1.3e-17 93.2 131 42.0
Ca_19954_v3 Cicer arietinum L. HOM05D003566 ORTHO05D005288 1.3e-17 93.2 134 41.8
Ciclev10019734m.g Citrus clementina HOM05D003566 ORTHO05D005288 1.3e-17 93.2 131 43.5
HPP92_020661 Vanilla planifolia HOM05D003566 ORTHO05D005288 1.3e-17 93.2 134 42.5
AL4G44400 Arabidopsis lyrata HOM05D003566 ORTHO05D005288 1.7e-17 92.8 131 42.0
BcaB01g03274 Brassica carinata HOM05D003566 ORTHO05D005288 1.7e-17 92.8 131 42.0
CSS0046086 Camellia sinensis var. sinensis HOM05D003566 ORTHO05D005288 1.7e-17 92.8 133 42.1
CANSAT56G0647 Cannabis sativa HOM05D003566 ORTHO05D005288 1.7e-17 92.8 136 42.6
CANSAT56G3470 Cannabis sativa HOM05D003566 ORTHO05D005288 1.7e-17 92.8 136 42.6
MELO3C006199.2 Cucumis melo HOM05D003566 ORTHO05D005288 1.7e-17 92.8 136 41.9
Lj3g0026165 Lotus japonicus HOM05D003566 ORTHO05D005288 1.7e-17 92.8 134 42.5
Manes.05G046900 Manihot esculenta HOM05D003566 ORTHO05D005288 1.7e-17 92.8 133 42.1
SGA_v2.0_scaffold153G36998 Striga asiatica HOM05D003566 ORTHO05D005288 1.7e-17 92.8 131 43.5
THA.LOC104817242 Tarenaya hassleriana HOM05D003566 ORTHO05D005288 1.7e-17 92.8 131 42.7
Thecc.01G378400 Theobroma cacao HOM05D003566 ORTHO05D005288 1.7e-17 92.8 134 41.8
vmacro21022 Vaccinium macrocarpon HOM05D003566 ORTHO05D005288 1.7e-17 92.8 134 42.5
Dinv43695 Davidia involucrata HOM05D003566 ORTHO05D005288 2.3e-17 92.4 134 43.3
Sabra14G0047900 Salix brachista HOM05D003566 ORTHO05D005288 2.3e-17 92.4 134 42.5
TAR374G0275 Trochodendron aralioides HOM05D003566 ORTHO05D005288 2.3e-17 92.4 134 43.3
AT2G45300 Arabidopsis thaliana HOM05D003566 ORTHO05D005288 2.9e-17 92.0 131 42.0
Cfa001747 Carpinus fangiana HOM05D003566 ORTHO05D005288 2.9e-17 92.0 134 41.0
Oeu055501.1 Olea europaea HOM05D003566 ORTHO05D005288 2.9e-17 92.0 134 42.5
ClCG05G002340 Citrullus lanatus HOM05D003566 ORTHO05D005288 3.8e-17 91.7 136 41.2
Peaxi162Scf00959g00022 Petunia axillaris HOM05D003566 ORTHO05D005288 3.8e-17 91.7 134 41.8
Phvul.010G082200 Phaseolus vulgaris HOM05D003566 ORTHO05D005288 3.8e-17 91.7 134 41.8
Sed0009137 Sechium edule HOM05D003566 ORTHO05D005288 3.8e-17 91.7 136 40.4
TWI14G0817 Tripterygium wilfordii HOM05D003566 ORTHO05D005288 3.8e-17 91.7 134 42.5
Actinidia12680 Actinidia chinensis HOM05D003566 ORTHO05D005288 5.0e-17 91.3 133 42.1
Ah.05g174400 Amaranthus hybridus HOM05D003566 ORTHO05D005288 5.0e-17 91.3 134 40.3
Gohir.D12G104500 Gossypium hirsutum HOM05D003566 ORTHO05D005288 5.0e-17 91.3 134 41.0
MD07G1119600 Malus domestica HOM05D003566 ORTHO05D005288 5.0e-17 91.3 134 41.8
Manes.01G266800 Manihot esculenta HOM05D003566 ORTHO05D005288 5.0e-17 91.3 133 42.1
Sc23g0003670 Simmondsia chinensis HOM05D003566 ORTHO05D005288 5.0e-17 91.3 131 41.2
Solyc05g050980.3 Solanum lycopersicum HOM05D003566 ORTHO05D005288 5.0e-17 91.3 134 41.0
Sopen05g029450 Solanum pennellii HOM05D003566 ORTHO05D005288 5.0e-17 91.3 134 41.0
GSVIVG01027673001 Vitis vinifera HOM05D003566 ORTHO05D005288 5.0e-17 91.3 134 41.8
Aa31LG10G15010 Aethionema arabicum HOM05D003566 ORTHO05D005288 6.6e-17 90.9 131 42.0
CARHR171150 Cardamine hirsuta HOM05D003566 ORTHO05D005288 6.6e-17 90.9 131 42.7
ECA234G2985 Erigeron canadensis HOM05D003566 ORTHO05D005288 6.6e-17 90.9 134 41.8
Potri.002G146400 Populus trichocarpa HOM05D003566 ORTHO05D005288 6.6e-17 90.9 134 41.8
QL08p052732 Quercus lobata HOM05D003566 ORTHO05D005288 6.6e-17 90.9 135 41.5
Rhsim01G0149300 Rhododendron simsii HOM05D003566 ORTHO05D005288 6.6e-17 90.9 133 42.1
Rhsim07G0028700 Rhododendron simsii HOM05D003566 ORTHO05D005288 6.6e-17 90.9 134 41.0
Sabra02G0114000 Salix brachista HOM05D003566 ORTHO05D005288 6.6e-17 90.9 134 41.8
Cpa.g.sc18.106 Carica papaya HOM05D003566 ORTHO05D005288 8.6e-17 90.5 133 41.4
Lalb_Chr12g0208181 Lupinus albus HOM05D003566 ORTHO05D005288 8.6e-17 90.5 134 41.8
PGSC0003DMG400026006 Solanum tuberosum HOM05D003566 ORTHO05D005288 8.6e-17 90.5 134 41.8
TWI59G0119 Tripterygium wilfordii HOM05D003566 ORTHO05D005288 8.6e-17 90.5 134 41.8
Zm00001eb378020 Zea mays HOM05D003566 ORTHO05D005288 8.6e-17 90.5 131 42.7
ECA236G4962 Erigeron canadensis HOM05D003566 ORTHO05D005288 1.1e-16 90.1 134 41.0
Lalb_Chr07g0189911 Lupinus albus HOM05D003566 ORTHO05D005288 1.1e-16 90.1 134 41.8
Medtr4g024620 Medicago truncatula HOM05D003566 ORTHO05D005288 1.1e-16 90.1 134 41.8
Nitab4.5_0001329g0120 Nicotiana tabacum HOM05D003566 ORTHO05D005288 1.1e-16 90.1 134 41.0
Nitab4.5_0003912g0050 Nicotiana tabacum HOM05D003566 ORTHO05D005288 1.1e-16 90.1 134 41.0
PSO832G3659 Papaver somniferum HOM05D003566 ORTHO05D005288 1.1e-16 90.1 134 41.0
MBI04_g30227_MAGBIO Magnolia biondii HOM05D003566 ORTHO05D005288 1.5e-16 89.7 129 42.6
Nitab4.5_0000457g0110 Nicotiana tabacum HOM05D003566 ORTHO05D005288 1.5e-16 89.7 134 41.0
SalBow5G0834 Salvia bowleyana HOM05D003566 ORTHO05D005288 1.5e-16 89.7 131 42.0
vmacro13413 Vaccinium macrocarpon HOM05D003566 ORTHO05D005288 1.5e-16 89.7 134 40.3
CsaV3_3G009780 Cucumis sativus L. HOM05D003566 ORTHO05D005288 1.9e-16 89.4 136 40.4
HanXRQChr16g0520001 Helianthus annuus HOM05D003566 ORTHO05D005288 1.9e-16 89.4 134 40.3
Os06g0133900 Oryza sativa ssp. japonica HOM05D003566 ORTHO05D005288 1.9e-16 89.4 131 42.0
Potri.014G068300 Populus trichocarpa HOM05D003566 ORTHO05D005288 1.9e-16 89.4 134 42.5
QL08p052721 Quercus lobata HOM05D003566 ORTHO05D005288 1.9e-16 89.4 134 40.3
Sp5g02490 Schrenkiella parvula HOM05D003566 ORTHO05D005288 1.9e-16 89.4 131 42.0
Hund17028 Selenicereus undatus HOM05D003566 ORTHO05D005288 1.9e-16 89.4 134 39.6
Solyc01g091190.3 Solanum lycopersicum HOM05D003566 ORTHO05D005288 1.9e-16 89.4 134 41.8
Sopen01g036940 Solanum pennellii HOM05D003566 ORTHO05D005288 1.9e-16 89.4 134 41.8
VMungo0331G1999 Vigna mungo HOM05D003566 ORTHO05D005288 1.9e-16 89.4 134 41.0
MSTRG.4899 Avicennia marina HOM05D003566 ORTHO05D005288 2.5e-16 89.0 134 40.3
CiPaw.01G263300 Carya illinoinensis HOM05D003566 ORTHO05D005288 2.5e-16 89.0 133 39.8
Glyma.03G027400 Glycine max HOM05D003566 ORTHO05D005288 2.5e-16 89.0 134 40.3
PSO782G1824 Papaver somniferum HOM05D003566 ORTHO05D005288 2.5e-16 89.0 134 40.3
PGSC0003DMG400007018 Solanum tuberosum HOM05D003566 ORTHO05D005288 2.5e-16 89.0 135 41.5
SGA_v2.0_scaffold95G28906 Striga asiatica HOM05D003566 ORTHO05D005288 2.5e-16 89.0 129 41.1
Migut.B01621 Erythranthe guttata HOM05D003566 ORTHO05D005288 3.3e-16 88.6 134 40.3
Lj7C530T15 Lonicera japonica HOM05D003566 ORTHO05D005288 3.3e-16 88.6 124 42.7
Peaxi162Scf00013g03114 Petunia axillaris HOM05D003566 ORTHO05D005288 3.3e-16 88.6 134 41.0
arahy.Tifrunner.gnm1.ann1.9A4JNA Arachis hypogaea HOM05D003566 ORTHO05D005288 5.6e-16 87.8 134 41.0
arahy.Tifrunner.gnm1.ann1.VTP8RR Arachis hypogaea HOM05D003566 ORTHO05D005288 5.6e-16 87.8 134 41.0
CAN.G388.31 Capsicum annuum HOM05D003566 ORTHO05D005288 5.6e-16 87.8 134 39.6
Cc02_g24040 Coffea canephora HOM05D003566 ORTHO05D005288 5.6e-16 87.8 134 40.3
Dinv32368 Davidia involucrata HOM05D003566 ORTHO05D005288 5.6e-16 87.8 134 41.0
Eucgr.D02465 Eucalyptus grandis HOM05D003566 ORTHO05D005288 5.6e-16 87.8 134 40.3
Glyma.01G139600 Glycine max HOM05D003566 ORTHO05D005288 5.6e-16 87.8 134 40.3
HanXRQChr04g0122731 Helianthus annuus HOM05D003566 ORTHO05D005288 5.6e-16 87.8 134 39.6
MSTRG.17176 Avicennia marina HOM05D003566 ORTHO05D005288 7.3e-16 87.4 131 40.5
Lsat_1_v5_gn_4_43461 Lactuca sativa HOM05D003566 ORTHO05D005288 7.3e-16 87.4 133 42.1
TPR.G31328 Trifolium pratense HOM05D003566 ORTHO05D005288 7.3e-16 87.4 133 40.6
Lsat_1_v5_gn_7_9680 Lactuca sativa HOM05D003566 ORTHO05D005288 9.5e-16 87.0 134 39.6
AUR62004195 Chenopodium quinoa HOM05D003566 ORTHO05D005288 1.2e-15 86.7 134 39.6
Nitab4.5_0005272g0040 Nicotiana tabacum HOM05D003566 ORTHO05D005288 1.2e-15 86.7 146 37.0
Oeu011923.1 Olea europaea HOM05D003566 ORTHO05D005288 2.1e-15 85.9 134 38.8
PGR004G2250 Punica granatum HOM05D003566 ORTHO05D005288 2.1e-15 85.9 133 40.6
EL10Ac1g00874 Beta vulgaris HOM05D003566 ORTHO05D005288 2.8e-15 85.5 134 38.8
Lj9A568G56 Lonicera japonica HOM05D003566 ORTHO05D005288 2.8e-15 85.5 133 41.4
unitig_26.g8900 Utricularia gibba HOM05D003566 ORTHO05D005288 2.8e-15 85.5 134 39.6
Actinidia12250 Actinidia chinensis HOM05D003566 ORTHO05D005288 3.6e-15 85.1 125 42.4
AUR62013650 Chenopodium quinoa HOM05D003566 ORTHO05D005288 3.6e-15 85.1 134 38.8
DCAR_008553 Daucus carota HOM05D003566 ORTHO05D005288 6.1e-15 84.3 134 39.6
unitig_76.g29084 Utricularia gibba HOM05D003566 ORTHO05D005288 1.0e-14 83.6 129 39.5
BcaC01g05142 Brassica carinata HOM05D003566 ORTHO05D005288 1.4e-14 83.2 122 41.0
ATR0757G160 Amborella trichopoda HOM05D003566 ORTHO05D005288 4.0e-14 81.6 129 38.8
CDE04G0743 Ceratophyllum demersum HOM05D003566 ORTHO05D005288 6.8e-14 80.9 134 38.1
CDE12G0626 Ceratophyllum demersum HOM05D003566 ORTHO05D005288 6.8e-14 80.9 134 38.1
Gohir.D12G104550 Gossypium hirsutum HOM05D003566 ORTHO05D005288 2.9e-12 75.5 118 42.4
Gorai.008G113800 Gossypium raimondii HOM05D003566 ORTHO05D005288 2.9e-12 75.5 118 42.4
SMO137G0336 Selaginella moellendorffii HOM05D003566 ORTHO05D005288 3.2e-11 72.0 135 34.1
Atru.chr5.290 Acer truncatum HOM05D003566 ORTHO05D005288 4.1e-11 71.6 119 39.5
Pp3c20_17090 Physcomitrium patens HOM05D003566 ORTHO05D005288 5.4e-11 71.2 128 37.5
AagrBONN_evm.TU.Sc2ySwM_117.2264 Anthoceros agrestis HOM05D003566 ORTHO05D005288 7.0e-11 70.9 128 35.9
MD02G1207400 Malus domestica HOM05D003566 ORTHO05D018971 1.6e-10 69.7 48 68.8
Pp3c23_11380 Physcomitrium patens HOM05D003566 ORTHO05D005288 6.0e-10 67.8 128 35.2
CBR_g26047 Chara braunii HOM05D003566 ORTHO05D005288 1.0e-09 67.0 135 35.6
Gorai.008G113700 Gossypium raimondii HOM05D003566 ORTHO05D005288 1.3e-09 66.6 125 38.4
ECA234G2802 Erigeron canadensis HOM05D003566 ORTHO05D007485 1.7e-09 66.2 54 61.1
unitig_749.g14378 Utricularia gibba HOM05D003566 ORTHO05D005288 5.0e-09 64.7 48 60.4
Sopen09g001390 Solanum pennellii HOM05D003566 ORTHO05D394106 1.2e-07 60.1 51 54.9
Mapoly0034s0104 Marchantia polymorpha HOM05D003566 ORTHO05D005288 1.6e-07 59.7 135 31.1
AUR62038008 Chenopodium quinoa HOM05D003566 ORTHO05D018971 1.8e-06 56.2 47 53.2
arahy.Tifrunner.gnm1.ann1.EDS2Z7 Arachis hypogaea HOM05D003566 ORTHO05D015842 2.3e-06 55.8 47 53.2
MBI18_g19439_MAGBIO Magnolia biondii HOM05D003464 ORTHO05D003170 5.2e-06 54.7 47 51.1
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 8.9e-06 53.9 47 51.1


User provided reference genes

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