Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1116400 Malus domestica HOM05D002603 ORTHO05D002907 4.2e-107 391.3 196 100.0
MD12G1096300 Malus domestica HOM05D002603 ORTHO05D002907 3.7e-87 325.1 212 81.1
MD14G1089400 Malus domestica HOM05D002603 ORTHO05D002907 5.6e-75 284.6 212 72.6
Prupe.7G034500 Prunus persica HOM05D002603 ORTHO05D002907 2.0e-72 276.2 213 70.9
GSVIVG01025743001 Vitis vinifera HOM05D002603 ORTHO05D002907 2.6e-64 249.2 217 62.7
Atru.chr1.1397 Acer truncatum HOM05D002603 ORTHO05D002907 4.9e-63 245.0 217 62.2
CiPaw.09G048800 Carya illinoinensis HOM05D002603 ORTHO05D002907 2.4e-62 242.7 222 63.1
Ciclev10012015m.g Citrus clementina HOM05D002603 ORTHO05D002907 2.4e-62 242.7 218 61.9
Haze_20237 Corylus avellana HOM05D002603 ORTHO05D002907 2.7e-61 239.2 222 60.8
Thecc.05G127600 Theobroma cacao HOM05D002603 ORTHO05D002907 4.6e-61 238.4 213 61.5
Cfa019995 Carpinus fangiana HOM05D002603 ORTHO05D002907 6.0e-61 238.0 222 60.4
Dinv03205 Davidia involucrata HOM05D002603 ORTHO05D002907 1.3e-60 236.9 217 61.8
TWI74G0363 Tripterygium wilfordii HOM05D002603 ORTHO05D002907 1.7e-60 236.5 215 60.9
CSS0034722 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 2.3e-60 236.1 217 61.3
Migut.J01643 Erythranthe guttata HOM05D002603 ORTHO05D002907 2.3e-60 236.1 217 62.2
Actinidia17958 Actinidia chinensis HOM05D002603 ORTHO05D002907 3.0e-60 235.7 217 59.9
Gohir.D11G322300 Gossypium hirsutum HOM05D002603 ORTHO05D002907 3.9e-60 235.3 214 60.7
Manes.09G003600 Manihot esculenta HOM05D002603 ORTHO05D002907 8.6e-60 234.2 217 61.3
Cc06_g19640 Coffea canephora HOM05D002603 ORTHO05D002907 1.5e-59 233.4 217 59.9
MELO3C026602.2 Cucumis melo HOM05D002603 ORTHO05D002907 1.9e-59 233.0 217 59.0
QL07p011359 Quercus lobata HOM05D002603 ORTHO05D002907 7.3e-59 231.1 220 61.4
CSS0025737 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 9.5e-59 230.7 217 60.4
Eucgr.A02231 Eucalyptus grandis HOM05D002603 ORTHO05D002907 1.6e-58 229.9 213 58.7
MSTRG.19795 Avicennia marina HOM05D002603 ORTHO05D002907 1.4e-57 226.9 217 59.4
Rhsim03G0036700 Rhododendron simsii HOM05D002603 ORTHO05D002907 1.8e-57 226.5 217 57.6
Potri.016G035700 Populus trichocarpa HOM05D002603 ORTHO05D002907 2.4e-57 226.1 217 57.6
PGR031G2792 Punica granatum HOM05D002603 ORTHO05D002907 3.1e-57 225.7 216 59.3
Duzib128G0797 Durio zibethinus HOM05D002603 ORTHO05D002907 8.9e-57 224.2 163 73.0
SalBow6G2761 Salvia bowleyana HOM05D002603 ORTHO05D002907 1.5e-56 223.4 217 58.5
RcHm_v2.0_Chr0c29g0501071 Rosa chinensis HOM05D002603 ORTHO05D002907 2.0e-56 223.0 213 59.6
RcHm_v2.0_Chr1g0337841 Rosa chinensis HOM05D002603 ORTHO05D002907 2.0e-56 223.0 213 59.6
CsaV3_3G043000 Cucumis sativus L. HOM05D002603 ORTHO05D002907 5.8e-56 221.5 217 56.7
Gorai.007G352400 Gossypium raimondii HOM05D002603 ORTHO05D002907 5.8e-56 221.5 250 52.0
Lalb_Chr22g0357531 Lupinus albus HOM05D002603 ORTHO05D002907 5.8e-56 221.5 219 58.9
Sabra06G0027200 Salix brachista HOM05D002603 ORTHO05D002907 5.8e-56 221.5 217 56.7
arahy.Tifrunner.gnm1.ann1.NB81DJ Arachis hypogaea HOM05D002603 ORTHO05D002907 7.6e-56 221.1 220 57.7
FAN03G1791 Fragaria x ananassa HOM05D002603 ORTHO05D002907 9.9e-56 220.7 214 60.7
SGA_v2.0_scaffold66G22265 Striga asiatica HOM05D004207 ORTHO05D002907 1.3e-55 220.3 217 57.6
arahy.Tifrunner.gnm1.ann1.K86MNX Arachis hypogaea HOM05D002603 ORTHO05D002907 1.7e-55 219.9 220 57.7
Potri.006G040300 Populus trichocarpa HOM05D002603 ORTHO05D002907 2.2e-55 219.5 217 56.2
RcHm_v2.0_Chr1g0337741 Rosa chinensis HOM05D002603 ORTHO05D002907 2.2e-55 219.5 246 53.7
unitig_699.g19524 Utricularia gibba HOM05D002603 ORTHO05D002907 2.2e-55 219.5 215 57.7
CSS0017575 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 2.9e-55 219.2 240 54.2
FvH4_7g07280 Fragaria vesca HOM05D002603 ORTHO05D002907 3.8e-55 218.8 213 58.2
FAN06G3043 Fragaria x ananassa HOM05D002603 ORTHO05D002907 4.9e-55 218.4 213 58.2
vmacro07780 Vaccinium macrocarpon HOM05D002603 ORTHO05D002907 4.9e-55 218.4 224 55.8
CANSAT64G0741 Cannabis sativa HOM05D002603 ORTHO05D002907 6.4e-55 218.0 219 55.7
Nitab4.5_0004629g0060 Nicotiana tabacum HOM05D002603 ORTHO05D002907 8.4e-55 217.6 217 57.1
Solyc12g021180.2 Solanum lycopersicum HOM05D002603 ORTHO05D002907 8.4e-55 217.6 228 54.4
FAN10G2006 Fragaria x ananassa HOM05D002603 ORTHO05D002907 1.4e-54 216.9 214 59.3
Hma1.2p1_0252F.1_g102820 Hydrangea macrophylla HOM05D002603 ORTHO05D002907 2.4e-54 216.1 217 56.2
CSS0000794 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 3.2e-54 215.7 225 56.0
TAR625G1189 Trochodendron aralioides HOM05D002603 ORTHO05D002907 3.2e-54 215.7 213 58.2
Sed0008427 Sechium edule HOM05D002603 ORTHO05D002907 4.2e-54 215.3 146 74.0
Sopen12g011090 Solanum pennellii HOM05D002603 ORTHO05D002907 4.2e-54 215.3 217 55.8
Cpa.g.sc92.80 Carica papaya HOM05D002603 ORTHO05D002907 7.1e-54 214.5 208 60.1
Oeu005204.2 Olea europaea HOM05D002603 ORTHO05D002907 9.2e-54 214.2 245 52.2
SGA_v2.0_scaffold69G23162 Striga asiatica HOM05D004207 ORTHO05D005188 1.2e-53 213.8 217 55.8
Nitab4.5_0013137g0010 Nicotiana tabacum HOM05D002603 ORTHO05D002907 1.6e-53 213.4 217 56.2
THA.LOC104823207 Tarenaya hassleriana HOM05D002603 ORTHO05D002907 2.1e-53 213.0 217 54.4
Peaxi162Scf00076g00319 Petunia axillaris HOM05D002603 ORTHO05D002907 4.6e-53 211.8 217 55.3
CSS0004855 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 2.3e-52 209.5 237 52.7
MSTRG.10788 Avicennia marina HOM05D002603 ORTHO05D002907 6.6e-52 208.0 217 55.3
FAN01G0401 Fragaria x ananassa HOM05D002603 ORTHO05D002907 6.6e-52 208.0 213 55.9
Phvul.001G121600 Phaseolus vulgaris HOM05D002603 ORTHO05D002907 1.1e-51 207.2 214 56.5
CAN.G8.30 Capsicum annuum HOM05D002603 ORTHO05D002907 1.9e-51 206.5 217 54.8
VMungo1383G3140 Vigna mungo HOM05D002603 ORTHO05D002907 2.5e-51 206.1 214 56.1
Psat3g079800 Pisum sativum HOM05D002603 ORTHO05D002907 3.3e-51 205.7 216 55.6
DCAR_009136 Daucus carota HOM05D002603 ORTHO05D002907 7.3e-51 204.5 217 53.9
Ca_08382_v3 Cicer arietinum L. HOM05D002603 ORTHO05D002907 1.6e-50 203.4 217 55.8
MBI19_g14620_MAGBIO Magnolia biondii HOM05D002603 ORTHO05D002907 2.1e-50 203.0 217 53.0
MBI19_g45267_MAGBIO Magnolia biondii HOM05D002603 ORTHO05D002907 2.1e-50 203.0 217 53.0
HanXRQChr01g0008101 Helianthus annuus HOM05D002603 ORTHO05D002907 2.8e-50 202.6 217 53.9
Glyma.19G129300 Glycine max HOM05D002603 ORTHO05D002907 6.2e-50 201.4 213 55.9
Lj1g0009963 Lotus japonicus HOM05D002603 ORTHO05D002907 1.8e-49 199.9 225 53.3
Lsat_1_v5_gn_5_156820 Lactuca sativa HOM05D002603 ORTHO05D002907 3.1e-49 199.1 217 53.9
Glyma.03G126200 Glycine max HOM05D002603 ORTHO05D002907 4.0e-49 198.7 213 54.9
RcHm_v2.0_Chr1g0337801 Rosa chinensis HOM05D002603 ORTHO05D002907 4.0e-49 198.7 146 73.3
Lalb_Chr24g0400411 Lupinus albus HOM05D002603 ORTHO05D002907 9.0e-49 197.6 147 70.7
Sabra16G0038000 Salix brachista HOM05D002603 ORTHO05D002907 9.0e-49 197.6 147 69.4
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 2.0e-48 196.4 217 53.5
EL10Ac3g07250 Beta vulgaris HOM05D002603 ORTHO05D002907 3.4e-48 195.7 217 50.7
CSS0006853 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 3.4e-48 195.7 218 54.1
AUR62030304 Chenopodium quinoa HOM05D002603 ORTHO05D002907 5.8e-48 194.9 217 50.7
CDE08G1322 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 1.7e-47 193.4 217 52.1
Hund19086 Selenicereus undatus HOM05D002603 ORTHO05D002907 1.7e-47 193.4 219 50.7
PSO384G0250 Papaver somniferum HOM05D002603 ORTHO05D002907 3.8e-47 192.2 218 51.4
PSO339G5736 Papaver somniferum HOM05D002603 ORTHO05D002907 4.9e-47 191.8 218 50.9
TPR.G16084 Trifolium pratense HOM05D002603 ORTHO05D002907 6.4e-47 191.4 224 50.9
Sc25g0005460 Simmondsia chinensis HOM05D002603 ORTHO05D002907 8.4e-47 191.0 217 50.2
ECA248G3411 Erigeron canadensis HOM05D002603 ORTHO05D002907 1.9e-46 189.9 218 52.3
Medtr7g089540 Medicago truncatula HOM05D002603 ORTHO05D002907 1.2e-45 187.2 218 51.4
Prupe.4G082800 Prunus persica HOM05D002603 ORTHO05D002907 2.1e-45 186.4 212 53.8
HPP92_015454 Vanilla planifolia HOM05D002603 ORTHO05D002907 4.6e-45 185.3 209 49.8
AUR62018358 Chenopodium quinoa HOM05D002603 ORTHO05D002907 5.1e-44 181.8 209 50.2
Prupe.7G034700 Prunus persica HOM05D002603 ORTHO05D002907 9.0e-41 171.0 212 50.0
A09p62310 Brassica napus HOM05D002603 ORTHO05D002907 4.2e-38 162.2 214 43.9
BolC8t52139H Brassica oleracea HOM05D002603 ORTHO05D002907 4.2e-38 162.2 218 42.7
BraA09t41593Z Brassica rapa HOM05D002603 ORTHO05D002907 5.4e-38 161.8 214 43.9
ATR0307G070 Amborella trichopoda HOM05D002603 ORTHO05D002907 1.6e-37 160.2 261 41.4
BcaC07g41585 Brassica carinata HOM05D002603 ORTHO05D002907 6.0e-37 158.3 218 42.2
C08p45870 Brassica napus HOM05D002603 ORTHO05D002907 6.0e-37 158.3 218 42.2
AL3G34390 Arabidopsis lyrata HOM05D002603 ORTHO05D002907 2.3e-36 156.4 215 44.2
Os11g0136800 Oryza sativa ssp. japonica HOM05D002603 ORTHO05D002907 3.0e-36 156.0 216 43.1
Os12g0133700 Oryza sativa ssp. japonica HOM05D002603 ORTHO05D002907 1.1e-35 154.1 216 42.6
Carub.0006s0316 Capsella rubella HOM05D002603 ORTHO05D002907 4.3e-35 152.1 212 43.9
Zm00001eb093380 Zea mays HOM05D002603 ORTHO05D002907 2.8e-34 149.4 215 43.3
BcaB08g34381 Brassica carinata HOM05D002603 ORTHO05D002907 1.8e-33 146.7 211 41.7
ECA233G2731 Erigeron canadensis HOM05D002603 ORTHO05D002907 2.4e-33 146.4 216 42.1
ECA233G3050 Erigeron canadensis HOM05D002603 ORTHO05D002907 1.7e-31 140.2 216 40.3
ECA233G1535 Erigeron canadensis HOM05D002603 ORTHO05D002907 1.8e-28 130.2 209 40.2
Lj1A1089G59 Lonicera japonica HOM05D002603 ORTHO05D002907 9.6e-27 124.4 94 66.0
TAR625G0151 Trochodendron aralioides HOM05D002603 ORTHO05D002907 9.6e-27 124.4 114 61.4
ECA234G4417 Erigeron canadensis HOM05D002603 ORTHO05D002907 4.8e-26 122.1 197 41.6
Thhalv10005645m.g Eutrema salsugineum HOM05D002603 ORTHO05D002907 1.1e-25 120.9 212 38.7
SGA_v2.0_scaffold66G22361 Striga asiatica HOM05D002603 ORTHO05D002907 1.8e-25 120.2 133 49.6
Aa31LG8G12330 Aethionema arabicum HOM05D002603 ORTHO05D002907 1.0e-23 114.4 147 46.3
CARHR161780 Cardamine hirsuta HOM05D002603 ORTHO05D002907 1.8e-20 103.6 218 35.8
Gohir.A11G306800 Gossypium hirsutum HOM05D002603 ORTHO05D002907 1.1e-19 100.9 114 49.1
Prupe.7G035100 Prunus persica HOM05D002603 ORTHO05D002907 3.3e-19 99.4 153 44.4
Mapoly0062s0043 Marchantia polymorpha HOM05D002603 ORTHO05D002907 2.8e-18 96.3 212 31.1
SMO134G0105 Selaginella moellendorffii HOM05D002603 ORTHO05D002907 4.8e-18 95.5 227 31.3
Pp3c23_1130 Physcomitrium patens HOM05D002603 ORTHO05D002907 6.5e-15 85.1 213 30.5
Cc00_g13160 Coffea canephora HOM05D002603 ORTHO05D002907 2.1e-13 80.1 182 37.4
Pp3c20_10210 Physcomitrium patens HOM05D002603 ORTHO05D002907 2.1e-13 80.1 213 30.0
Cc00_g15400 Coffea canephora HOM05D002603 ORTHO05D002907 4.6e-13 79.0 40 90.0
Peaxi162Scf01087g00001 Petunia axillaris HOM05D002603 ORTHO05D002907 5.1e-12 75.5 48 75.0
SMO137G0144 Selaginella moellendorffii HOM05D002603 ORTHO05D002907 1.1e-09 67.8 142 33.1
SMO353G0167 Selaginella moellendorffii HOM05D002603 ORTHO05D002907 2.0e-08 63.5 142 33.1
Cre06.g267250 Chlamydomonas reinhardtii HOM05D001370 ORTHO05D138899 1.9e-06 57.0 41 58.5
SMO010G0012 Selaginella moellendorffii HOM05D002603 ORTHO05D004632 1.9e-06 57.0 62 41.9
SMO340G0300 Selaginella moellendorffii HOM05D002603 ORTHO05D002907 2.5e-06 56.6 46 52.2
Cc00_g21340 Coffea canephora HOM05D002603 ORTHO05D002907 5.5e-06 55.5 33 75.8
SMO163G0086 Selaginella moellendorffii HOM05D002603 ORTHO05D004632 7.2e-06 55.1 142 31.7


User provided reference genes

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