Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 1.4e-116 422.9 208 100.0
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 1.3e-101 373.2 208 88.0
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 2.5e-89 332.4 211 77.7
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 7.2e-89 330.9 212 78.3
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 4.7e-88 328.2 213 77.5
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 6.1e-88 327.8 214 77.1
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 3.1e-84 315.5 214 73.4
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 5.3e-84 314.7 215 73.0
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 1.2e-83 313.5 210 75.2
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 1.6e-83 313.2 215 74.0
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 2.0e-83 312.8 198 78.3
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 3.5e-83 312.0 194 78.9
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 3.5e-83 312.0 198 78.3
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 4.5e-83 311.6 190 80.5
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 1.0e-82 310.5 214 72.4
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 1.3e-82 310.1 198 75.3
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 1.3e-82 310.1 215 73.0
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 1.7e-82 309.7 198 78.3
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 8.5e-82 307.4 196 76.5
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 1.1e-81 307.0 214 72.0
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 1.1e-81 307.0 212 72.6
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 1.6e-80 303.1 204 76.5
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 4.7e-80 301.6 197 75.1
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 2.3e-79 299.3 187 78.6
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 2.3e-79 299.3 188 77.1
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 3.0e-79 298.9 211 72.5
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 5.2e-79 298.1 195 74.9
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 5.2e-79 298.1 195 74.9
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 6.7e-79 297.7 175 83.4
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 6.7e-79 297.7 219 70.3
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 8.8e-79 297.4 211 71.6
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 2.0e-78 296.2 210 70.5
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 2.0e-78 296.2 203 70.4
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 5.7e-78 294.7 187 77.5
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 7.5e-78 294.3 187 73.8
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 1.3e-77 293.5 187 77.0
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 1.3e-77 293.5 188 76.1
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 1.3e-77 293.5 185 75.7
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 2.2e-77 292.7 190 74.2
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 6.3e-77 291.2 191 74.3
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 1.4e-76 290.0 177 78.5
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 1.8e-76 289.7 211 69.2
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 7.0e-76 287.7 214 67.3
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 7.0e-76 287.7 187 74.3
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 9.1e-76 287.3 203 70.0
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 1.2e-75 287.0 188 73.4
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 3.5e-75 285.4 177 75.1
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 7.7e-75 284.3 192 72.4
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 1.7e-74 283.1 188 71.3
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 5.0e-74 281.6 212 67.5
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 6.5e-74 281.2 196 70.9
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 6.5e-74 281.2 198 71.7
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 8.5e-74 280.8 222 66.2
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 8.5e-74 280.8 203 68.0
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 1.1e-73 280.4 199 69.8
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 2.5e-73 279.3 207 65.2
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 2.5e-73 279.3 196 69.4
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 3.2e-73 278.9 198 67.7
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 3.2e-73 278.9 194 70.1
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 3.2e-73 278.9 222 65.8
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 4.2e-73 278.5 217 65.0
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 9.4e-73 277.3 188 71.8
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 9.4e-73 277.3 181 76.8
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 2.1e-72 276.2 188 73.4
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 8.0e-72 274.2 178 74.2
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 8.0e-72 274.2 178 74.2
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 1.4e-71 273.5 201 64.7
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 3.0e-71 272.3 190 69.5
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 4.0e-71 271.9 188 70.7
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 6.8e-71 271.2 175 74.9
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 6.8e-71 271.2 175 74.9
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 8.8e-71 270.8 201 70.1
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 2.6e-70 269.2 204 66.7
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 3.4e-70 268.9 222 62.2
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.4e-68 263.5 176 75.6
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 2.4e-68 262.7 191 69.6
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 4.1e-68 261.9 180 67.8
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 2.7e-67 259.2 175 71.4
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 5.9e-67 258.1 235 57.4
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 5.9e-67 258.1 210 67.1
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 2.3e-66 256.1 181 69.6
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 1.5e-65 253.4 144 83.3
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 1.2e-64 250.4 141 84.4
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 1.3e-61 240.4 141 80.9
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 3.5e-59 232.3 165 72.1
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 5.9e-59 231.5 173 63.6
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 1.7e-58 229.9 173 64.2
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 1.5e-57 226.9 170 63.5
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 1.9e-57 226.5 184 65.8
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 1.2e-56 223.8 206 53.9
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 1.4e-55 220.3 181 68.0
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 1.2e-54 217.2 173 56.6
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 4.4e-54 215.3 164 64.0
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 5.8e-54 214.9 173 56.1
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 6.4e-53 211.5 147 68.7
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 2.1e-48 196.4 142 70.4
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 3.2e-44 182.6 151 66.2
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 2.3e-42 176.4 133 69.2
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 5.2e-39 165.2 208 45.7
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 1.1e-36 157.5 193 47.7
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 1.9e-36 156.8 123 61.8
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 4.1e-36 155.6 180 45.0
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 1.1e-33 147.5 230 39.1
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 1.2e-32 144.1 134 52.2
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 2.1e-32 143.3 85 76.5
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 8.1e-32 141.4 85 75.3
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 2.1e-27 126.7 170 42.4
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 1.1e-23 114.4 56 87.5
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 5.3e-23 112.1 177 39.5
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 5.8e-22 108.6 83 65.1
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 6.4e-21 105.1 96 59.4
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 7.3e-17 91.7 83 54.2
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 9.6e-17 91.3 71 64.8
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 1.4e-12 77.4 62 61.3
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 4.6e-11 72.4 64 59.4
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 7.9e-11 71.6 74 52.7
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 3.9e-10 69.3 34 88.2
Lalb_Chr19g0127491 Lupinus albus HOM05D006988 ORTHO05D008731 9.6e-09 64.7 75 50.7
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 9.6e-09 64.7 33 87.9
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 3.1e-07 59.7 213 25.8
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 4.0e-07 59.3 188 26.1
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 6.9e-07 58.5 109 30.3
Cre03.g188650 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 1.2e-06 57.8 171 26.9
Hund03480 Selenicereus undatus HOM05D005663 ORTHO05D007258 2.0e-06 57.0 262 24.0
Mapoly0065s0038 Marchantia polymorpha HOM05D006358 ORTHO05D008185 3.4e-06 56.2 136 30.1
Mapoly0058s0022 Marchantia polymorpha HOM05D005663 ORTHO05D007258 9.9e-06 54.7 194 26.3


User provided reference genes

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