Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 4.4e-89 331.3 167 100.0
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 9.9e-89 330.1 167 99.4
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 5.1e-77 291.2 167 86.8
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 5.1e-77 291.2 167 86.8
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 5.1e-77 291.2 167 86.8
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 5.1e-77 291.2 167 86.8
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 8.6e-77 290.4 167 87.4
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.9e-76 289.3 167 86.2
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 8.4e-72 273.9 167 79.0
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 1.9e-71 272.7 166 81.3
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 1.9e-71 272.7 167 80.8
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 4.2e-71 271.6 167 78.4
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 7.1e-71 270.8 191 73.8
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 2.1e-70 269.2 167 77.8
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 4.6e-70 268.1 165 80.6
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 1.3e-69 266.5 167 78.4
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 1.3e-69 266.5 166 79.5
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 2.3e-69 265.8 167 79.6
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 6.6e-69 264.2 167 78.4
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 6.6e-69 264.2 165 80.0
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 6.6e-69 264.2 165 78.8
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 6.6e-69 264.2 168 78.6
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 8.7e-69 263.8 165 78.8
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 1.1e-68 263.5 167 77.8
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.1e-68 263.5 165 78.8
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 1.1e-68 263.5 167 76.6
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 2.5e-68 262.3 165 79.4
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 9.6e-68 260.4 167 76.6
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 1.6e-67 259.6 166 75.9
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 3.1e-66 255.4 167 75.4
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 5.3e-66 254.6 167 75.4
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 9.0e-66 253.8 170 74.7
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 9.0e-66 253.8 167 74.9
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 3.4e-65 251.9 166 74.7
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 3.4e-65 251.9 167 74.3
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 4.5e-65 251.5 189 68.3
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 5.8e-65 251.1 163 76.1
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 7.6e-65 250.8 167 74.9
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 7.6e-65 250.8 164 75.0
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 3.8e-64 248.4 167 72.5
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 6.4e-64 247.7 167 74.3
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 8.4e-64 247.3 169 72.8
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 1.4e-63 246.5 167 73.7
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.4e-63 246.5 169 72.2
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.4e-63 246.5 193 67.4
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 1.9e-63 246.1 169 72.2
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 2.4e-63 245.7 162 74.7
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 4.2e-63 245.0 162 74.7
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 5.4e-63 244.6 167 73.1
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 5.4e-63 244.6 167 73.1
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 5.4e-63 244.6 167 73.1
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 9.3e-63 243.8 163 74.2
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 9.3e-63 243.8 167 73.1
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 9.3e-63 243.8 167 71.3
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 3.5e-62 241.9 166 71.7
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 3.5e-62 241.9 167 73.7
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 7.9e-62 240.7 166 69.3
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 7.9e-62 240.7 166 72.3
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 1.0e-61 240.4 166 72.9
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 1.3e-61 240.0 166 74.1
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 2.3e-61 239.2 167 71.3
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 2.3e-61 239.2 166 69.9
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 3.0e-61 238.8 164 71.3
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 3.9e-61 238.4 167 70.1
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 5.1e-61 238.0 168 72.0
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 6.7e-61 237.7 167 70.1
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 1.1e-60 236.9 159 73.6
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 1.5e-60 236.5 149 77.9
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 2.5e-60 235.7 166 69.3
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 2.5e-60 235.7 166 68.7
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 3.3e-60 235.3 166 70.5
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 3.3e-60 235.3 153 76.5
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 9.6e-60 233.8 166 70.5
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 9.6e-60 233.8 166 70.5
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 3.7e-59 231.9 154 74.7
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 3.7e-59 231.9 166 68.7
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 3.7e-59 231.9 204 62.3
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 3.7e-59 231.9 163 69.9
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 3.4e-57 225.3 166 62.7
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 2.9e-56 222.2 190 61.1
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 1.4e-55 219.9 138 76.8
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 7.1e-55 217.6 137 73.7
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.6e-54 216.5 167 61.1
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 1.3e-53 213.4 117 87.2
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 5.6e-52 208.0 140 71.4
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 3.7e-51 205.3 174 63.2
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 6.2e-51 204.5 165 60.6
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 1.1e-50 203.8 165 61.8
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.4e-50 203.4 128 74.2
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 1.8e-50 203.0 163 60.7
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 1.2e-49 200.3 139 68.3
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 2.6e-49 199.1 163 58.9
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 7.6e-49 197.6 163 59.5
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 7.6e-49 197.6 116 83.6
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 1.7e-48 196.4 118 80.5
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 2.2e-48 196.1 150 59.3
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 2.9e-48 195.7 150 59.3
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 3.8e-48 195.3 157 58.6
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 3.8e-48 195.3 150 58.7
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 3.8e-48 195.3 150 58.7
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 3.8e-48 195.3 124 76.6
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 4.9e-48 194.9 117 79.5
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 4.9e-48 194.9 163 57.7
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 6.5e-48 194.5 121 80.2
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 7.1e-47 191.0 150 57.3
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 9.3e-47 190.7 150 58.0
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 9.3e-47 190.7 136 66.2
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 2.1e-46 189.5 137 65.0
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 2.1e-46 189.5 127 70.9
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.0e-45 187.2 127 66.9
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 2.3e-45 186.0 165 55.2
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 6.7e-45 184.5 167 53.3
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.9e-44 183.0 167 52.7
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.5e-44 182.6 167 52.1
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.3e-44 182.2 167 53.3
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 9.7e-44 180.6 137 58.4
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 2.2e-43 179.5 117 76.1
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 3.7e-43 178.7 165 51.5
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 3.8e-40 168.7 138 61.6
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.8e-37 159.8 89 84.3
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 4.8e-35 151.8 120 60.0
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.3e-34 148.3 154 51.9
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 1.2e-33 147.1 167 47.9
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 1.5e-33 146.7 103 67.0
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 2.6e-33 146.0 167 47.3
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 2.6e-33 146.0 163 49.1
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 4.2e-31 138.7 128 59.4
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 4.7e-30 135.2 128 57.8
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 1.0e-29 134.0 132 50.8
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 4.4e-28 128.6 90 70.0
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 5.7e-28 128.3 118 52.5
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 6.3e-27 124.8 76 77.6
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 8.2e-27 124.4 123 49.6
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 5.3e-26 121.7 146 43.2
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 1.4e-23 113.6 73 75.3
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.9e-23 113.2 167 43.7
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 3.0e-21 105.9 71 67.6
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 6.7e-21 104.8 57 77.2
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 9.7e-20 100.9 103 47.6
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.1e-18 97.4 160 38.1
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.1e-18 97.4 99 52.5
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 2.0e-17 93.2 75 68.0
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 2.6e-17 92.8 73 54.8
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 2.6e-17 92.8 73 54.8
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 2.6e-17 92.8 73 54.8
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 6.5e-16 88.2 75 61.3
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.0e-13 80.9 59 64.4
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 4.0e-13 79.0 54 74.1
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 5.2e-13 78.6 58 62.1
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 5.2e-13 78.6 167 35.3
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 1.2e-09 67.4 54 61.1
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 1.6e-09 67.0 47 70.2
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 2.0e-09 66.6 46 69.6
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 4.5e-09 65.5 48 68.8
MD01G1029500 Malus domestica HOM05D004832 ORTHO05D248908 2.1e-06 56.6 30 93.3
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.7e-06 56.2 39 76.9
QL12p027355 Quercus lobata HOM05D001289 ORTHO05D002298 6.1e-06 55.1 34 73.5


User provided reference genes

Program Settings