Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1104800 Malus domestica HOM05D002637 ORTHO05D008095 4.3e-178 627.9 315 100.0
Prupe.2G132600 Prunus persica HOM05D002637 ORTHO05D008095 1.4e-128 463.4 297 77.1
FvH4_7g09990 Fragaria vesca HOM05D002637 ORTHO05D008095 9.1e-120 434.1 297 74.1
RcHm_v2.0_Chr1g0347591 Rosa chinensis HOM05D002637 ORTHO05D008095 7.7e-119 431.0 297 73.7
FAN03G3044 Fragaria x ananassa HOM05D002637 ORTHO05D008095 4.2e-117 425.2 297 73.4
FAN06G4488 Fragaria x ananassa HOM05D002637 ORTHO05D008095 2.8e-116 422.5 304 71.7
FAN06G0182 Fragaria x ananassa HOM05D002637 ORTHO05D008095 1.0e-115 420.6 304 71.4
FAN10G1960 Fragaria x ananassa HOM05D002637 ORTHO05D008095 1.8e-112 409.8 305 70.2
QL04p030554 Quercus lobata HOM05D002637 ORTHO05D008095 7.5e-106 387.9 316 64.6
CSS0015236 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D008095 4.1e-104 382.1 297 65.0
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 4.1e-104 382.1 305 64.6
GSVIVG01018268001 Vitis vinifera HOM05D002637 ORTHO05D008095 4.1e-104 382.1 298 65.1
CSS0036120 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D008095 5.4e-104 381.7 297 64.6
Duzib133G1175 Durio zibethinus HOM05D002637 ORTHO05D008095 1.2e-103 380.6 302 63.6
Haze_02837 Corylus avellana HOM05D002637 ORTHO05D008095 1.3e-102 377.1 303 63.7
Dinv43626 Davidia involucrata HOM05D002637 ORTHO05D008095 1.5e-101 373.6 303 64.4
Manes.01G272700 Manihot esculenta HOM05D002637 ORTHO05D008095 1.5e-101 373.6 298 63.4
Lj7A545T102 Lonicera japonica HOM05D002637 ORTHO05D008095 2.5e-101 372.9 299 63.2
Actinidia12150 Actinidia chinensis HOM05D002637 ORTHO05D008095 5.6e-101 371.7 300 63.3
Thecc.01G393500 Theobroma cacao HOM05D002637 ORTHO05D008095 7.3e-101 371.3 302 62.3
Hma1.2p1_0405F.1_g145580 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 9.5e-101 370.9 297 63.6
Hma1.2p1_3157F.1_g333383 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 9.5e-101 370.9 297 63.6
Glyma.13G187300 Glycine max HOM05D002637 ORTHO05D008095 1.6e-100 370.2 302 62.3
Atru.chr5.146 Acer truncatum HOM05D002637 ORTHO05D008095 2.1e-100 369.8 303 62.0
Lj1g0002851 Lotus japonicus HOM05D002637 ORTHO05D008095 6.8e-99 364.8 303 62.4
Gorai.004G071300 Gossypium raimondii HOM05D002637 ORTHO05D008095 3.4e-98 362.5 298 60.4
Potri.002G137300 Populus trichocarpa HOM05D002637 ORTHO05D008095 3.4e-98 362.5 296 62.2
Ciclev10021077m.g Citrus clementina HOM05D002637 ORTHO05D008095 7.5e-98 361.3 306 60.5
Gohir.A08G058900 Gossypium hirsutum HOM05D002637 ORTHO05D008095 7.5e-98 361.3 296 59.8
PGR004G1933 Punica granatum HOM05D002637 ORTHO05D008095 3.7e-97 359.0 306 59.2
Gohir.D08G068100 Gossypium hirsutum HOM05D002637 ORTHO05D008095 6.4e-97 358.2 296 59.5
CANSAT64G0516 Cannabis sativa HOM05D002637 ORTHO05D008095 8.3e-97 357.8 301 62.8
ECA240G0640 Erigeron canadensis HOM05D002637 ORTHO05D008095 2.4e-96 356.3 298 61.1
Cpa.g.sc166.42 Carica papaya HOM05D002637 ORTHO05D008095 4.1e-96 355.5 303 61.7
Lalb_Chr03g0040331 Lupinus albus HOM05D002637 ORTHO05D008095 2.0e-95 353.2 306 58.8
CsaV3_3G007610 Cucumis sativus L. HOM05D002637 ORTHO05D008095 3.5e-95 352.4 302 61.3
Carub.0004s2744 Capsella rubella HOM05D002637 ORTHO05D008095 7.8e-95 351.3 301 57.1
Prupe.2G128900 Prunus persica HOM05D002637 ORTHO05D008095 1.0e-94 350.9 301 65.8
TWI59G1212 Tripterygium wilfordii HOM05D002637 ORTHO05D008095 3.0e-94 349.4 303 60.4
Phvul.011G190700 Phaseolus vulgaris HOM05D002637 ORTHO05D008095 3.9e-94 349.0 298 59.4
VMungo1127G0026 Vigna mungo HOM05D002637 ORTHO05D008095 8.6e-94 347.8 298 58.4
Medtr7g407140 Medicago truncatula HOM05D002637 ORTHO05D008095 2.5e-93 346.3 296 60.8
ClCG05G000440 Citrullus lanatus HOM05D002637 ORTHO05D008095 3.3e-93 345.9 302 59.9
HanXRQChr13g0423181 Helianthus annuus HOM05D002637 ORTHO05D008095 4.3e-93 345.5 296 59.8
Nn1g00861 Nelumbo nucifera HOM05D002637 ORTHO05D008095 4.3e-93 345.5 300 58.0
Psat0s4320g0040 Pisum sativum HOM05D002637 ORTHO05D008095 9.5e-93 344.4 295 60.0
Sabra02G0106200 Salix brachista HOM05D001766 ORTHO05D001875 1.2e-92 344.0 362 52.2
MELO3C005982.2 Cucumis melo HOM05D002637 ORTHO05D008095 2.1e-92 343.2 302 59.3
Nitab4.5_0003696g0060 Nicotiana tabacum HOM05D002637 ORTHO05D008095 2.8e-92 342.8 304 59.5
Sed0022781 Sechium edule HOM05D002637 ORTHO05D008095 3.6e-92 342.4 307 59.3
THA.LOC104827587 Tarenaya hassleriana HOM05D002637 ORTHO05D008095 4.7e-92 342.0 300 56.7
Sc26g0001610 Simmondsia chinensis HOM05D002637 ORTHO05D008095 6.2e-92 341.7 296 58.8
arahy.Tifrunner.gnm1.ann1.XZZ81X Arachis hypogaea HOM05D002637 ORTHO05D008095 1.1e-91 340.9 298 58.4
Eucgr.D01520 Eucalyptus grandis HOM05D002637 ORTHO05D008095 1.1e-91 340.9 302 55.3
Peaxi162Scf00030g00416 Petunia axillaris HOM05D002637 ORTHO05D008095 1.1e-91 340.9 311 57.6
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 2.3e-91 339.7 298 57.7
Nitab4.5_0003553g0010 Nicotiana tabacum HOM05D002637 ORTHO05D008095 5.2e-91 338.6 304 59.2
Sopen01g036170 Solanum pennellii HOM05D002637 ORTHO05D008095 3.4e-90 335.9 302 59.3
Aqoxy3G02741 Aquilegia oxysepala HOM05D002637 ORTHO05D008095 4.4e-90 335.5 305 57.4
Solyc01g090380.3 Solanum lycopersicum HOM05D002637 ORTHO05D008095 5.8e-90 335.1 302 58.9
Oeu063231.1 Olea europaea HOM05D002637 ORTHO05D008095 4.9e-89 332.0 303 57.8
PGSC0003DMG402026045 Solanum tuberosum HOM05D002637 ORTHO05D008095 1.9e-88 330.1 302 57.9
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 5.4e-88 328.6 271 62.0
Aa31LG1G26400 Aethionema arabicum HOM05D002637 ORTHO05D008095 1.2e-87 327.4 320 51.9
Sp4g26950 Schrenkiella parvula HOM05D002637 ORTHO05D008095 1.6e-87 327.0 310 54.8
COL.COLO4_12421 Corchorus olitorius HOM05D002637 ORTHO05D008095 3.5e-87 325.9 268 63.4
Lsat_1_v5_gn_3_131600 Lactuca sativa HOM05D002637 ORTHO05D008095 3.5e-87 325.9 301 55.5
CARHR140110 Cardamine hirsuta HOM05D002637 ORTHO05D008095 2.3e-86 323.2 300 53.7
Thhalv10001543m.g Eutrema salsugineum HOM05D002637 ORTHO05D008095 2.3e-86 323.2 305 53.1
AL4G43950 Arabidopsis lyrata HOM05D002637 ORTHO05D008095 3.0e-86 322.8 305 54.1
AUR62021542 Chenopodium quinoa HOM05D002637 ORTHO05D008095 3.9e-86 322.4 296 56.1
Rhsim07G0035200 Rhododendron simsii HOM05D002637 ORTHO05D008095 3.9e-86 322.4 293 58.4
Cc02_g25040 Coffea canephora HOM05D002637 ORTHO05D008095 6.6e-86 321.6 301 56.5
CAN.G362.5 Capsicum annuum HOM05D002637 ORTHO05D008095 1.1e-85 320.9 302 56.6
MSTRG.20697 Avicennia marina HOM05D002637 ORTHO05D008095 1.5e-85 320.5 306 56.5
AUR62008551 Chenopodium quinoa HOM05D002637 ORTHO05D008095 1.2e-84 317.4 297 54.9
BcaC02g07119 Brassica carinata HOM05D002637 ORTHO05D008095 3.6e-84 315.8 297 54.2
A04p33520 Brassica napus HOM05D002637 ORTHO05D008095 5.2e-83 312.0 298 53.4
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 5.2e-83 312.0 300 55.7
PSO063G7293 Papaver somniferum HOM05D002637 ORTHO05D008095 2.6e-82 309.7 303 53.5
C04p71280 Brassica napus HOM05D002637 ORTHO05D008095 3.4e-82 309.3 300 53.7
BolC4t28632H Brassica oleracea HOM05D002637 ORTHO05D008095 3.4e-82 309.3 300 53.7
AT2G44850 Arabidopsis thaliana HOM05D002637 ORTHO05D008095 3.8e-81 305.8 260 56.2
EL10Ac1g00753 Beta vulgaris HOM05D002637 ORTHO05D008095 1.4e-80 303.9 296 54.1
BraA04t18814Z Brassica rapa HOM05D002637 ORTHO05D008095 1.9e-80 303.5 298 52.3
BcaB06g29403 Brassica carinata HOM05D002637 ORTHO05D008095 4.1e-80 302.4 299 52.2
Ca_04041_v3 Cicer arietinum L. HOM05D002637 ORTHO05D008095 2.1e-79 300.1 260 58.8
Migut.B01542 Erythranthe guttata HOM05D002637 ORTHO05D008095 2.7e-79 299.7 302 55.3
vmacro13491 Vaccinium macrocarpon HOM05D002637 ORTHO05D008095 2.5e-77 293.1 266 56.8
CDE09G0379 Ceratophyllum demersum HOM05D002637 ORTHO05D008095 1.6e-76 290.4 302 52.6
unitig_8.g3841 Utricularia gibba HOM05D002637 ORTHO05D008095 3.6e-76 289.3 298 54.0
SHI13611 Sapria himalayana HOM05D002637 ORTHO05D008095 1.2e-74 284.3 303 51.2
Eucgr.D01526 Eucalyptus grandis HOM05D002637 ORTHO05D008095 3.9e-70 269.2 259 52.5
DCAR_015837 Daucus carota HOM05D002637 ORTHO05D008095 1.9e-69 266.9 303 48.5
Hund17095 Selenicereus undatus HOM05D002637 ORTHO05D008095 4.8e-68 262.3 234 56.4
Os02g0655100 Oryza sativa ssp. japonica HOM05D002637 ORTHO05D008095 7.6e-66 255.0 303 44.9
HPP92_014683 Vanilla planifolia HOM05D002637 ORTHO05D008095 4.6e-63 245.7 301 46.5
TAR629G1915 Trochodendron aralioides HOM05D002637 ORTHO05D008095 7.9e-63 245.0 215 60.5
Zm00001eb186370 Zea mays HOM05D002637 ORTHO05D008095 1.0e-62 244.6 312 43.9
PSO782G4032 Papaver somniferum HOM05D002637 ORTHO05D008095 3.0e-62 243.0 299 46.2
ATR0057G061 Amborella trichopoda HOM05D002637 ORTHO05D008095 1.4e-59 234.2 324 43.2
AagrBONN_evm.TU.Sc2ySwM_117.1982 Anthoceros agrestis HOM05D002637 ORTHO05D008095 3.8e-57 226.1 306 42.2
SalBow5G4529 Salvia bowleyana HOM05D002637 ORTHO05D008095 4.3e-53 212.6 189 59.8
Pp3c12_10320 Physcomitrium patens HOM05D002637 ORTHO05D008095 9.6e-53 211.5 360 38.3
Pp3c4_13850 Physcomitrium patens HOM05D002637 ORTHO05D008095 2.2e-49 200.3 360 38.1
TPR.G28606 Trifolium pratense HOM05D002637 ORTHO05D008095 2.2e-44 183.7 137 65.0
Hma1.2p1_2406F.1_g321490 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 2.0e-42 177.2 162 58.0
Ah.05g177920 Amaranthus hybridus HOM05D002637 ORTHO05D008095 1.4e-40 171.0 133 63.2
MBI04_g07220_MAGBIO Magnolia biondii HOM05D002637 ORTHO05D008095 1.8e-38 164.1 122 67.2
SEGI_39924 Sequoiadendron giganteum HOM05D002637 ORTHO05D008095 5.9e-34 149.1 134 53.0
TPR.G36686 Trifolium pratense HOM05D002637 ORTHO05D008095 6.1e-31 139.0 116 62.1
TPR.G7688 Trifolium pratense HOM05D002637 ORTHO05D008095 1.1e-29 134.8 118 58.5
CBR_g61261 Chara braunii HOM05D002637 ORTHO05D008095 9.7e-29 131.7 290 33.1
Medtr7g407110 Medicago truncatula HOM05D002637 ORTHO05D008095 3.4e-26 123.2 94 62.8
Medtr7g006510 Medicago truncatula HOM05D002637 ORTHO05D008095 1.9e-24 117.5 101 53.5
TPR.G32964 Trifolium pratense HOM05D002637 ORTHO05D008095 1.0e-22 111.7 87 63.2
SEGI_14087 Sequoiadendron giganteum HOM05D002637 ORTHO05D008095 2.6e-21 107.1 180 36.1
Atru.chr5.3330 Acer truncatum HOM05D002637 ORTHO05D008095 2.8e-20 103.6 148 44.6
Phvul.011G167200 Phaseolus vulgaris HOM05D002637 ORTHO05D008095 7.0e-19 99.0 266 30.1
FAN06G2370 Fragaria x ananassa HOM05D002637 ORTHO05D008095 8.5e-17 92.0 90 55.6
Cre03.g181600 Chlamydomonas reinhardtii HOM05D002637 ORTHO05D008095 1.6e-15 87.8 282 26.2
Atru.chr5.3333 Acer truncatum HOM05D000263 ORTHO05D000213 4.4e-13 79.7 109 44.0
Aa31LG7G11720 Aethionema arabicum HOM05D002637 ORTHO05D008095 7.5e-13 79.0 67 56.7
TAR629G2985 Trochodendron aralioides HOM05D002637 ORTHO05D008095 4.1e-11 73.2 57 61.4
Atru.chr5.3338 Acer truncatum HOM05D002637 ORTHO05D008095 2.2e-09 67.4 56 55.4


User provided reference genes

Program Settings