Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1089900 Malus domestica HOM05D002770 ORTHO05D003011 8.7e-56 219.9 101 100.0
MD07G1089100 Malus domestica HOM05D002770 ORTHO05D003011 3.8e-51 204.5 100 93.0
MD02G1224900 Malus domestica HOM05D002770 ORTHO05D003011 3.9e-48 194.5 100 90.0
MD07G1090600 Malus domestica HOM05D002770 ORTHO05D003011 2.5e-47 191.8 100 89.0
MD07G1088800 Malus domestica HOM05D002770 ORTHO05D003011 8.1e-46 186.8 100 85.0
Prupe.2G115700 Prunus persica HOM05D002770 ORTHO05D003011 6.5e-43 177.2 98 79.6
MD07G1089700 Malus domestica HOM05D002770 ORTHO05D003011 1.9e-39 165.6 100 79.0
RcHm_v2.0_Chr1g0344071 Rosa chinensis HOM05D002770 ORTHO05D003011 1.3e-38 162.9 100 72.0
FAN03G2444 Fragaria x ananassa HOM05D002770 ORTHO05D003011 4.1e-37 157.9 98 71.4
FAN06G1321 Fragaria x ananassa HOM05D002770 ORTHO05D003011 4.1e-37 157.9 98 71.4
FvH4_7g08780 Fragaria vesca HOM05D002770 ORTHO05D003011 1.2e-36 156.4 98 70.4
FAN01G2864 Fragaria x ananassa HOM05D002770 ORTHO05D003011 5.9e-36 154.1 98 69.4
Dinv44022 Davidia involucrata HOM05D002770 ORTHO05D003011 8.2e-30 133.7 99 60.6
CSS0011590 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 6.9e-29 130.6 99 60.6
Eucgr.D01183 Eucalyptus grandis HOM05D002770 ORTHO05D003011 1.2e-28 129.8 98 59.2
Cfa011023 Carpinus fangiana HOM05D002770 ORTHO05D003011 2.0e-28 129.0 98 57.1
QL04p026158 Quercus lobata HOM05D002770 ORTHO05D003011 5.9e-28 127.5 98 58.2
Cpa.g.sc52.70 Carica papaya HOM05D002770 ORTHO05D003011 7.7e-28 127.1 100 58.0
Haze_02902 Corylus avellana HOM05D002770 ORTHO05D003011 7.7e-28 127.1 98 56.1
CSS0009152 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 1.0e-27 126.7 99 60.6
Gorai.008G111400 Gossypium raimondii HOM05D002770 ORTHO05D003011 2.2e-27 125.6 98 55.1
Gohir.D12G102200 Gossypium hirsutum HOM05D002770 ORTHO05D003011 6.5e-27 124.0 98 55.1
CANSAT25G0893 Cannabis sativa HOM05D002770 ORTHO05D003011 8.5e-27 123.6 98 55.1
Gohir.A12G099200 Gossypium hirsutum HOM05D002770 ORTHO05D003011 8.5e-27 123.6 98 55.1
MSTRG.4960 Avicennia marina HOM05D002770 ORTHO05D003011 1.1e-26 123.2 99 55.6
CSS0043922 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 1.1e-26 123.2 99 57.6
COL.COLO4_12352 Corchorus olitorius HOM05D002770 ORTHO05D003011 1.9e-26 122.5 98 54.1
TWI14G0561 Tripterygium wilfordii HOM05D002770 ORTHO05D003011 4.2e-26 121.3 98 56.1
Migut.N01715 Erythranthe guttata HOM05D002770 ORTHO05D003011 7.2e-26 120.6 100 56.0
Atru.chr5.43 Acer truncatum HOM05D002770 ORTHO05D003011 1.6e-25 119.4 98 55.1
Atru.chr5.74 Acer truncatum HOM05D002770 ORTHO05D003011 1.6e-25 119.4 98 55.1
Aqoxy3G02558 Aquilegia oxysepala HOM05D002770 ORTHO05D003011 3.6e-25 118.2 102 58.8
Thecc.01G402500 Theobroma cacao HOM05D002770 ORTHO05D003011 7.9e-25 117.1 98 53.1
GSVIVG01018374001 Vitis vinifera HOM05D002770 ORTHO05D003011 1.0e-24 116.7 101 55.4
MSTRG.20663 Avicennia marina HOM05D002770 ORTHO05D003011 1.8e-24 115.9 99 50.5
Cc02_g25620 Coffea canephora HOM05D002770 ORTHO05D003011 2.3e-24 115.5 100 53.0
Duzib138G1245 Durio zibethinus HOM05D002770 ORTHO05D003011 3.0e-24 115.2 97 52.6
PGR004G2859 Punica granatum HOM05D002770 ORTHO05D003011 3.9e-24 114.8 98 53.1
AUR62023367 Chenopodium quinoa HOM05D002770 ORTHO05D003011 5.1e-24 114.4 101 54.5
Nn1g00665 Nelumbo nucifera HOM05D002770 ORTHO05D003011 6.7e-24 114.0 104 52.9
Actinidia05788 Actinidia chinensis HOM05D002770 ORTHO05D003011 8.8e-24 113.6 100 55.0
Ciclev10019957m.g Citrus clementina HOM05D002770 ORTHO05D003011 8.8e-24 113.6 100 51.0
Hund27419 Selenicereus undatus HOM05D002770 ORTHO05D003011 2.5e-23 112.1 99 51.5
TAR374G1576 Trochodendron aralioides HOM05D002770 ORTHO05D003011 3.3e-23 111.7 102 53.9
EL10Ac1g00714 Beta vulgaris HOM05D002770 ORTHO05D003011 5.7e-23 110.9 101 53.5
CiPaw.14G016800 Carya illinoinensis HOM05D002770 ORTHO05D003011 9.7e-23 110.2 100 53.0
ClCG05G002890 Citrullus lanatus HOM05D002770 ORTHO05D003011 1.3e-22 109.8 101 53.5
MBI04_g03343_MAGBIO Magnolia biondii HOM05D002770 ORTHO05D003011 2.8e-22 108.6 98 52.0
Manes.05G058500 Manihot esculenta HOM05D002770 ORTHO05D003011 6.3e-22 107.5 100 51.0
Sed0027284 Sechium edule HOM05D002770 ORTHO05D003011 1.1e-21 106.7 100 52.0
Sc02g0003270 Simmondsia chinensis HOM05D002770 ORTHO05D003011 5.3e-21 104.4 101 48.5
Lj9A550T68 Lonicera japonica HOM05D002770 ORTHO05D003011 1.5e-20 102.8 98 49.0
PSO782G1010 Papaver somniferum HOM05D002770 ORTHO05D003011 1.5e-20 102.8 102 51.0
Potri.014G044200 Populus trichocarpa HOM05D002770 ORTHO05D003011 1.5e-20 102.8 98 45.9
Peaxi162Scf00745g00016 Petunia axillaris HOM05D002770 ORTHO05D003011 3.4e-20 101.7 100 49.0
Sabra14G0032100 Salix brachista HOM05D002770 ORTHO05D003011 4.5e-20 101.3 98 49.0
Nitab4.5_0004088g0050 Nicotiana tabacum HOM05D002770 ORTHO05D003011 5.9e-20 100.9 100 47.0
Solyc01g088600.4 Solanum lycopersicum HOM05D002770 ORTHO05D003011 5.9e-20 100.9 100 49.0
ATR1136G174 Amborella trichopoda HOM05D002770 ORTHO05D003011 1.0e-19 100.1 99 50.5
DCAR_025025 Daucus carota HOM05D002770 ORTHO05D003011 1.0e-19 100.1 99 46.5
SalBow4G3318 Salvia bowleyana HOM05D002770 ORTHO05D003011 1.0e-19 100.1 100 47.0
PGSC0003DMG401001686 Solanum tuberosum HOM05D002770 ORTHO05D003011 1.0e-19 100.1 100 48.0
PGSC0003DMG402001686 Solanum tuberosum HOM05D002770 ORTHO05D003011 1.0e-19 100.1 100 48.0
AUR62013789 Chenopodium quinoa HOM05D002770 ORTHO05D003011 2.2e-19 99.0 128 42.2
CAN.G756.17 Capsicum annuum HOM05D002770 ORTHO05D003011 5.0e-19 97.8 100 46.0
Gorai.004G067800 Gossypium raimondii HOM05D002770 ORTHO05D003011 5.0e-19 97.8 97 46.4
Oeu002904.1 Olea europaea HOM05D002770 ORTHO05D003011 6.5e-19 97.4 138 39.1
Nitab4.5_0005064g0050 Nicotiana tabacum HOM05D002770 ORTHO05D003011 8.5e-19 97.1 100 47.0
Sopen01g035450 Solanum pennellii HOM05D002770 ORTHO05D003011 3.2e-18 95.1 100 46.0
ECA236G0339 Erigeron canadensis HOM05D002770 ORTHO05D003011 5.5e-18 94.4 98 50.0
CsaV3_3G010430 Cucumis sativus L. HOM05D002770 ORTHO05D003011 4.7e-17 91.3 101 45.5
HanXRQChr06g0168271 Helianthus annuus HOM05D002770 ORTHO05D003011 4.7e-17 91.3 100 45.0
Lsat_1_v5_gn_7_11860 Lactuca sativa HOM05D002770 ORTHO05D003011 4.7e-17 91.3 78 51.3
Gohir.D08G065500 Gossypium hirsutum HOM05D002770 ORTHO05D003011 6.7e-16 87.4 98 44.9
CDE04G2107 Ceratophyllum demersum HOM05D002770 ORTHO05D003011 5.7e-15 84.3 98 48.0
MELO3C006267.2 Cucumis melo HOM05D002770 ORTHO05D003011 7.4e-15 84.0 99 48.5
FAN10G0308 Fragaria x ananassa HOM05D002770 ORTHO05D003011 2.8e-14 82.0 44 75.0
THA.LOC104817177 Tarenaya hassleriana HOM05D002770 ORTHO05D003011 9.1e-13 77.0 97 43.3
TPR.G17359 Trifolium pratense HOM05D002770 ORTHO05D003011 9.1e-13 77.0 98 41.8
HPP92_022441 Vanilla planifolia HOM05D002770 ORTHO05D003011 9.1e-13 77.0 106 43.4
Lalb_Chr07g0195181 Lupinus albus HOM05D002770 ORTHO05D003011 4.5e-12 74.7 99 43.4
arahy.Tifrunner.gnm1.ann1.S2VHS4 Arachis hypogaea HOM05D002770 ORTHO05D003011 5.9e-12 74.3 99 41.4
Gohir.A08G056150 Gossypium hirsutum HOM05D002770 ORTHO05D003011 2.2e-11 72.4 94 41.5
arahy.Tifrunner.gnm1.ann1.JDGP5U Arachis hypogaea HOM05D002770 ORTHO05D003011 6.5e-11 70.9 100 40.0
Carub.0004s2719 Capsella rubella HOM05D002770 ORTHO05D003011 6.5e-11 70.9 98 41.8
Psat0s4427g0040 Pisum sativum HOM05D002770 ORTHO05D003011 6.5e-11 70.9 98 40.8
Ca_23142_v3 Cicer arietinum L. HOM05D002770 ORTHO05D003011 1.1e-10 70.1 98 37.8
AL4G43670 Arabidopsis lyrata HOM05D002770 ORTHO05D003011 1.9e-10 69.3 98 41.8
AT2G44640 Arabidopsis thaliana HOM05D002770 ORTHO05D003011 3.2e-10 68.6 98 42.9
Thhalv10001437m.g Eutrema salsugineum HOM05D002770 ORTHO05D003011 3.2e-10 68.6 98 41.8
Glyma.03G103500 Glycine max HOM05D002770 ORTHO05D003011 5.5e-10 67.8 98 41.8
Lj3g0001773 Lotus japonicus HOM05D002770 ORTHO05D003011 7.2e-10 67.4 98 36.7
CARHR139850 Cardamine hirsuta HOM05D002770 ORTHO05D003011 9.4e-10 67.0 98 38.8
Glyma.07G120500 Glycine max HOM05D002770 ORTHO05D003011 1.6e-09 66.2 98 40.8
Sp4g26720 Schrenkiella parvula HOM05D002770 ORTHO05D003011 2.1e-09 65.9 98 39.8
BcaB02g08839 Brassica carinata HOM05D002770 ORTHO05D003011 3.6e-09 65.1 98 39.8
BcaC02g12288 Brassica carinata HOM05D002770 ORTHO05D003011 1.0e-08 63.5 100 40.0
C04p05590 Brassica napus HOM05D002770 ORTHO05D003011 1.0e-08 63.5 100 40.0
unitig_26.g8859 Utricularia gibba HOM05D002770 ORTHO05D003011 1.4e-08 63.2 65 46.2
Medtr8g009290 Medicago truncatula HOM05D002770 ORTHO05D003011 1.8e-08 62.8 98 35.7
Aa31LG1G26180 Aethionema arabicum HOM05D002770 ORTHO05D003011 2.3e-08 62.4 98 39.8
BolC4t22189H Brassica oleracea HOM05D002770 ORTHO05D003011 2.3e-08 62.4 101 37.6
BraA05t19454Z Brassica rapa HOM05D002770 ORTHO05D003011 4.0e-08 61.6 100 38.0
C03p29620 Brassica napus HOM05D002770 ORTHO05D003011 8.8e-08 60.5 98 40.8
BcaC01g05204 Brassica carinata HOM05D002770 ORTHO05D003011 1.1e-07 60.1 98 40.8
A03p24840 Brassica napus HOM05D002770 ORTHO05D003011 4.4e-07 58.2 100 40.0
BraA03t11691Z Brassica rapa HOM05D002770 ORTHO05D003011 4.4e-07 58.2 100 40.0
A05p04780 Brassica napus HOM05D002770 ORTHO05D003011 7.5e-07 57.4 101 34.7
BolC3t15311H Brassica oleracea HOM05D002770 ORTHO05D003011 1.7e-06 56.2 98 38.8
HanXRQChr01g0012481 Helianthus annuus HOM05D002770 ORTHO05D003011 2.8e-06 55.5 45 57.8
RcHm_v2.0_Chr1g0344131 Rosa chinensis HOM05D002770 ORTHO05D003011 3.7e-06 55.1 51 51.0
Phvul.010G041600 Phaseolus vulgaris HOM05D002770 ORTHO05D003011 8.2e-06 53.9 101 31.7


User provided reference genes

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