Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 1.3e-145 519.6 239 100.0
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 6.1e-100 367.9 257 67.7
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 1.0e-99 367.1 257 68.1
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 4.4e-98 361.7 250 68.0
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 7.5e-98 360.9 250 68.8
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 4.1e-96 355.1 252 67.5
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 5.3e-96 354.8 247 68.4
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 7.0e-96 354.4 247 68.4
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 7.0e-96 354.4 247 68.4
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 1.6e-95 353.2 256 66.0
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 1.6e-95 353.2 258 64.7
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 2.0e-95 352.8 247 68.0
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 2.7e-95 352.4 258 65.5
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 3.5e-95 352.1 250 66.8
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 1.0e-94 350.5 255 65.5
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 1.7e-94 349.7 257 65.4
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 3.8e-94 348.6 255 65.1
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 1.1e-93 347.1 250 64.8
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 2.5e-93 345.9 255 63.9
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 3.2e-93 345.5 257 62.6
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 3.2e-93 345.5 255 63.5
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 4.2e-93 345.1 257 62.6
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 4.2e-93 345.1 258 65.1
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 5.5e-93 344.7 250 65.2
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 7.2e-93 344.4 254 63.0
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 1.2e-92 343.6 245 66.1
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 2.7e-92 342.4 255 63.9
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 6.1e-92 341.3 254 64.6
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 1.8e-91 339.7 254 63.8
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 2.3e-91 339.3 248 64.9
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 3.0e-91 339.0 250 64.4
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 3.0e-91 339.0 257 63.8
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 5.2e-91 338.2 250 63.6
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 5.2e-91 338.2 250 63.2
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 1.2e-90 337.0 257 63.8
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 1.5e-90 336.7 250 64.0
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 2.0e-90 336.3 251 64.1
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.6e-90 335.9 250 63.6
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 2.6e-90 335.9 236 66.1
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 4.4e-90 335.1 254 63.4
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 4.4e-90 335.1 264 62.1
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 1.3e-89 333.6 244 63.5
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 1.7e-89 333.2 244 63.1
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 2.2e-89 332.8 257 63.0
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 2.2e-89 332.8 264 61.7
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.8e-89 332.4 254 60.6
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 2.8e-89 332.4 240 63.8
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 3.7e-89 332.0 254 61.4
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 4.8e-89 331.6 241 64.7
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 4.8e-89 331.6 234 66.2
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 6.3e-89 331.3 250 62.4
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 8.3e-89 330.9 254 62.2
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 1.1e-88 330.5 243 64.2
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 1.1e-88 330.5 236 64.8
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 1.1e-88 330.5 250 61.6
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 1.1e-88 330.5 250 61.6
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 1.4e-88 330.1 236 64.8
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 1.8e-88 329.7 243 64.2
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 1.8e-88 329.7 243 64.2
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 2.4e-88 329.3 236 64.8
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 2.4e-88 329.3 244 64.3
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 3.1e-88 328.9 239 64.9
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 3.1e-88 328.9 267 59.9
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 4.1e-88 328.6 267 60.3
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 7.0e-88 327.8 243 64.2
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 9.1e-88 327.4 253 61.7
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 9.1e-88 327.4 233 66.1
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 9.1e-88 327.4 235 65.1
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 1.2e-87 327.0 232 64.7
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 2.0e-87 326.2 236 64.4
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 2.0e-87 326.2 236 64.4
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 3.5e-87 325.5 229 66.8
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 3.5e-87 325.5 253 61.3
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 4.5e-87 325.1 233 65.7
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 4.5e-87 325.1 239 63.2
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 4.5e-87 325.1 247 61.1
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 4.5e-87 325.1 253 61.3
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 4.5e-87 325.1 257 59.9
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 7.7e-87 324.3 244 63.1
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 7.7e-87 324.3 235 63.4
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 7.7e-87 324.3 251 61.4
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 1.0e-86 323.9 234 63.7
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 2.3e-86 322.8 244 62.7
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 2.3e-86 322.8 235 63.0
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 2.9e-86 322.4 227 67.0
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 3.8e-86 322.0 254 61.4
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.8e-86 322.0 244 61.1
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 5.0e-86 321.6 231 64.1
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 6.5e-86 321.2 236 63.1
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 6.5e-86 321.2 226 65.5
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.1e-85 320.5 233 63.9
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.1e-85 320.5 242 62.4
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.1e-85 320.5 226 64.2
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 1.5e-85 320.1 237 62.4
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 1.9e-85 319.7 235 63.8
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 2.5e-85 319.3 229 65.1
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 2.5e-85 319.3 256 59.4
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.5e-85 319.3 246 61.0
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 3.3e-85 318.9 250 59.6
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 3.3e-85 318.9 233 62.7
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 4.2e-85 318.5 226 65.5
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 7.2e-85 317.8 242 62.8
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 7.2e-85 317.8 229 64.2
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 9.5e-85 317.4 225 65.3
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 2.8e-84 315.8 229 64.2
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 3.6e-84 315.5 233 62.7
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 8.0e-84 314.3 233 63.1
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 1.0e-83 313.9 254 60.6
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 1.4e-83 313.5 253 59.3
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 2.3e-83 312.8 229 63.8
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 3.0e-83 312.4 229 63.8
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 4.0e-83 312.0 227 63.9
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 4.0e-83 312.0 254 60.6
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 8.9e-83 310.8 226 64.2
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 8.9e-83 310.8 224 63.8
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 1.2e-82 310.5 248 59.7
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 1.5e-82 310.1 225 63.6
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 2.0e-82 309.7 249 59.4
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 2.6e-82 309.3 252 58.7
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 3.4e-82 308.9 228 62.3
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 3.4e-82 308.9 248 58.9
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 4.4e-82 308.5 249 59.8
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 7.5e-82 307.8 241 60.6
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 1.3e-81 307.0 234 60.3
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 2.2e-81 306.2 226 63.3
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 3.7e-81 305.4 236 60.6
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 4.9e-81 305.1 246 59.8
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 6.3e-81 304.7 228 62.3
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 8.3e-81 304.3 244 59.8
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 8.3e-81 304.3 230 62.2
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.1e-80 303.9 237 61.6
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 2.4e-80 302.8 226 61.5
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 2.4e-80 302.8 241 59.8
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 4.1e-80 302.0 236 59.7
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 1.6e-79 300.1 225 62.7
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 3.5e-79 298.9 233 59.2
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 5.9e-79 298.1 234 59.8
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 8.6e-78 294.3 211 66.8
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 1.5e-77 293.5 228 60.5
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 7.3e-77 291.2 224 59.8
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.6e-76 290.0 239 58.2
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 2.3e-75 286.2 233 58.4
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 6.4e-73 278.1 217 61.8
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 5.4e-72 275.0 149 80.5
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 6.0e-71 271.6 158 74.7
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 1.3e-70 270.4 226 54.9
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 6.2e-68 261.5 237 51.5
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 8.0e-68 261.2 170 67.1
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 2.3e-67 259.6 247 51.4
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 8.9e-67 257.7 251 49.8
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 4.9e-65 251.9 242 51.2
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 1.9e-64 250.0 226 51.8
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 1.6e-63 246.9 243 49.4
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 9.5e-53 211.1 198 52.5
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 2.1e-52 209.9 184 58.2
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 7.1e-48 194.9 178 54.5
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 7.6e-42 174.9 159 52.8
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 2.3e-38 163.3 96 77.1
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 1.6e-36 157.1 173 42.8
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 3.0e-30 136.3 87 67.8
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 5.8e-26 122.1 98 60.2
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 5.8e-26 122.1 116 51.7
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 1.7e-25 120.6 84 67.9
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 4.8e-12 75.9 64 56.2
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 1.2e-10 71.2 50 56.0


User provided reference genes

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