Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1081500 Malus domestica HOM05D006927 ORTHO05D009065 1.0e-176 623.2 299 100.0
FAN10G1940 Fragaria x ananassa HOM05D006927 ORTHO05D009065 1.1e-143 513.5 280 87.1
Prupe.2G106800 Prunus persica HOM05D006927 ORTHO05D009065 1.2e-142 510.0 276 88.8
RcHm_v2.0_Chr1g0340711 Rosa chinensis HOM05D006927 ORTHO05D009065 1.6e-142 509.6 280 87.5
FAN03G0521 Fragaria x ananassa HOM05D006927 ORTHO05D009065 2.3e-141 505.8 292 84.2
FvH4_7g08340 Fragaria vesca HOM05D006927 ORTHO05D009065 3.1e-141 505.4 292 83.6
FAN06G3009 Fragaria x ananassa HOM05D006927 ORTHO05D009065 7.1e-138 494.2 310 78.7
GSVIVG01019324001 Vitis vinifera HOM05D006927 ORTHO05D009065 2.6e-132 475.7 276 80.8
QL04p053394 Quercus lobata HOM05D006927 ORTHO05D009065 3.8e-131 471.9 276 81.2
Dinv43961 Davidia involucrata HOM05D006927 ORTHO05D009065 6.4e-131 471.1 276 80.4
Cpa.g.sc73.27 Carica papaya HOM05D006927 ORTHO05D009065 4.6e-129 464.9 283 78.1
Potri.013G070700 Populus trichocarpa HOM05D006927 ORTHO05D009065 3.0e-128 462.2 276 78.6
Manes.09G133500 Manihot esculenta HOM05D006927 ORTHO05D009065 5.1e-128 461.5 276 78.3
PGR083G0610 Punica granatum HOM05D006927 ORTHO05D009065 5.1e-128 461.5 277 76.9
TAR629G3441 Trochodendron aralioides HOM05D006927 ORTHO05D009065 5.1e-128 461.5 277 78.0
Gohir.A11G224222 Gossypium hirsutum HOM05D006927 ORTHO05D009065 2.5e-127 459.1 276 78.3
Thecc.05G234500 Theobroma cacao HOM05D006927 ORTHO05D009065 4.3e-127 458.4 276 79.3
Duzib177G0162 Durio zibethinus HOM05D006927 ORTHO05D009065 1.6e-126 456.4 276 77.9
Eucgr.D01080 Eucalyptus grandis HOM05D006927 ORTHO05D009065 1.6e-126 456.4 285 75.1
Gorai.007G250200 Gossypium raimondii HOM05D006927 ORTHO05D009065 2.8e-126 455.7 276 77.5
Lj9A617T58 Lonicera japonica HOM05D006927 ORTHO05D009065 3.1e-125 452.2 276 77.5
Ciclev10032190m.g Citrus clementina HOM05D006927 ORTHO05D009065 7.6e-124 447.6 285 74.7
CSS0044270 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 4.9e-123 444.9 276 75.0
Rhsim07G0047700 Rhododendron simsii HOM05D006927 ORTHO05D009065 4.9e-123 444.9 297 73.7
TWI34G1327 Tripterygium wilfordii HOM05D006927 ORTHO05D009065 4.9e-123 444.9 274 74.5
Haze_15787 Corylus avellana HOM05D006927 ORTHO05D009065 1.4e-122 443.4 277 78.0
CSS0031880 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 2.4e-122 442.6 276 74.6
CsaV3_6G006390 Cucumis sativus L. HOM05D006927 ORTHO05D009065 2.4e-122 442.6 278 75.9
Lsat_1_v5_gn_1_89341 Lactuca sativa HOM05D006927 ORTHO05D009065 4.2e-122 441.8 276 75.7
Lj1g0006598 Lotus japonicus HOM05D006927 ORTHO05D009065 5.4e-122 441.4 277 74.4
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 1.6e-121 439.9 312 67.3
HanXRQChr01g0018481 Helianthus annuus HOM05D006927 ORTHO05D009065 3.5e-121 438.7 278 75.9
Medtr3g118320 Medicago truncatula HOM05D006927 ORTHO05D009065 4.6e-121 438.3 279 76.0
MELO3C022480.2 Cucumis melo HOM05D006927 ORTHO05D009065 6.0e-121 438.0 278 74.8
Atru.chr2.1634 Acer truncatum HOM05D006927 ORTHO05D009065 2.3e-120 436.0 302 70.2
DCAR_001906 Daucus carota HOM05D006927 ORTHO05D009065 2.5e-119 432.6 276 73.2
MBI04_g06278_MAGBIO Magnolia biondii HOM05D006927 ORTHO05D009065 2.5e-119 432.6 277 71.5
FAN01G0804 Fragaria x ananassa HOM05D006927 ORTHO05D009065 5.6e-119 431.4 266 79.3
SalBow5G1207 Salvia bowleyana HOM05D006927 ORTHO05D009065 5.6e-119 431.4 276 74.6
MD02G1231900 Malus domestica HOM05D006927 ORTHO05D009065 1.3e-118 430.3 249 85.9
Nitab4.5_0000792g0130 Nicotiana tabacum HOM05D006927 ORTHO05D009065 2.8e-118 429.1 276 72.8
Glyma.06G001500 Glycine max HOM05D006927 ORTHO05D009065 6.2e-118 427.9 282 74.5
Nitab4.5_0006785g0060 Nicotiana tabacum HOM05D006927 ORTHO05D009065 8.1e-118 427.6 276 72.5
Cc02_g26470 Coffea canephora HOM05D006927 ORTHO05D009065 1.1e-117 427.2 276 72.8
TPR.G38566 Trifolium pratense HOM05D006927 ORTHO05D009065 1.8e-117 426.4 287 72.5
Solyc01g081480.3 Solanum lycopersicum HOM05D006927 ORTHO05D009065 5.3e-117 424.9 276 72.5
THA.LOC104820815 Tarenaya hassleriana HOM05D006927 ORTHO05D009065 5.3e-117 424.9 278 72.7
Thhalv10014137m.g Eutrema salsugineum HOM05D006927 ORTHO05D009065 6.9e-117 424.5 278 72.7
Sopen01g033040 Solanum pennellii HOM05D006927 ORTHO05D009065 2.6e-116 422.5 276 72.1
Sp6g26550 Schrenkiella parvula HOM05D006927 ORTHO05D009065 4.5e-116 421.8 278 71.6
Migut.B01420 Erythranthe guttata HOM05D006927 ORTHO05D009065 5.8e-116 421.4 276 71.4
Ca_15418_v3 Cicer arietinum L. HOM05D006927 ORTHO05D009065 9.9e-116 420.6 268 75.7
Sc11g0005590 Simmondsia chinensis HOM05D006927 ORTHO05D009065 9.9e-116 420.6 279 70.6
PGSC0003DMG400031110 Solanum tuberosum HOM05D006927 ORTHO05D009065 9.9e-116 420.6 277 71.8
VMungo0251G3349 Vigna mungo HOM05D006927 ORTHO05D009065 9.9e-116 420.6 278 72.3
Peaxi162Scf00907g00025 Petunia axillaris HOM05D006927 ORTHO05D009065 1.3e-115 420.2 276 71.4
Sed0018978 Sechium edule HOM05D006927 ORTHO05D009065 2.2e-115 419.5 278 70.9
AL6G28760 Arabidopsis lyrata HOM05D006927 ORTHO05D009065 2.9e-115 419.1 276 71.4
Phvul.002G317100 Phaseolus vulgaris HOM05D006927 ORTHO05D009065 2.9e-115 419.1 280 71.8
ECA248G1152 Erigeron canadensis HOM05D006927 ORTHO05D009065 3.8e-115 418.7 270 72.2
ATR0568G108 Amborella trichopoda HOM05D006927 ORTHO05D009065 1.4e-114 416.8 282 69.9
BcaC03g13532 Brassica carinata HOM05D006927 ORTHO05D009065 2.4e-114 416.0 276 71.7
Carub.0006s1591 Capsella rubella HOM05D006927 ORTHO05D009065 2.4e-114 416.0 278 70.5
AT5G17670 Arabidopsis thaliana HOM05D006927 ORTHO05D009065 4.2e-114 415.2 276 71.4
A02p04400 Brassica napus HOM05D006927 ORTHO05D009065 1.6e-113 413.3 282 70.9
arahy.Tifrunner.gnm1.ann1.DTN3WJ Arachis hypogaea HOM05D006927 ORTHO05D009065 2.1e-113 412.9 280 71.4
Ah.16g104050 Amaranthus hybridus HOM05D006927 ORTHO05D009065 3.5e-113 412.1 276 69.9
arahy.Tifrunner.gnm1.ann1.A7PVHI Arachis hypogaea HOM05D006927 ORTHO05D009065 7.9e-113 411.0 280 70.7
vmacro13598 Vaccinium macrocarpon HOM05D006927 ORTHO05D009065 7.9e-113 411.0 379 57.3
COL.COLO4_21417 Corchorus olitorius HOM05D006927 ORTHO05D009065 1.0e-112 410.6 277 72.2
CAN.G992.25 Capsicum annuum HOM05D006927 ORTHO05D009065 8.7e-112 407.5 277 69.7
C02p09230 Brassica napus HOM05D006927 ORTHO05D009065 1.1e-111 407.1 280 70.0
Os02g0129900 Oryza sativa ssp. japonica HOM05D006927 ORTHO05D009065 1.5e-111 406.8 279 72.4
SGA_v2.0_scaffold98G29375 Striga asiatica HOM05D006927 ORTHO05D009065 1.9e-111 406.4 286 70.3
ClCG06G000620 Citrullus lanatus HOM05D006927 ORTHO05D009065 2.5e-111 406.0 326 63.2
PSO675G5316 Papaver somniferum HOM05D006927 ORTHO05D009065 1.1e-109 400.6 293 67.9
Zm00001eb208940 Zea mays HOM05D006927 ORTHO05D009065 1.4e-109 400.2 279 68.5
CANSAT25G2771 Cannabis sativa HOM05D006927 ORTHO05D009065 1.7e-107 393.3 275 67.6
Aa31LG11G11960 Aethionema arabicum HOM05D006927 ORTHO05D009065 4.2e-106 388.7 310 63.2
Lalb_Chr08g0246751 Lupinus albus HOM05D006927 ORTHO05D009065 6.5e-99 364.8 280 62.9
Sabra13G0061600 Salix brachista HOM05D006927 ORTHO05D009065 1.4e-98 363.6 302 61.9
CDE02G0279 Ceratophyllum demersum HOM05D006927 ORTHO05D009065 2.8e-94 349.4 276 59.1
AagrBONN_evm.TU.Sc2ySwM_228.4179 Anthoceros agrestis HOM05D006927 ORTHO05D009065 7.2e-90 334.7 294 56.5
Pp3c20_10810 Physcomitrium patens HOM05D006927 ORTHO05D009065 2.7e-89 332.8 294 53.1
Mapoly0110s0034 Marchantia polymorpha HOM05D006927 ORTHO05D009065 4.6e-89 332.0 289 55.7
Psat5g000960 Pisum sativum HOM05D006927 ORTHO05D009065 1.3e-86 323.9 217 73.7
SMO141G0137 Selaginella moellendorffii HOM05D006927 ORTHO05D009065 1.4e-80 303.9 279 53.0
Actinidia31733 Actinidia chinensis HOM05D006927 ORTHO05D009065 3.5e-76 289.3 182 76.9
Nn1g09344 Nelumbo nucifera HOM05D006927 ORTHO05D009065 7.7e-76 288.1 166 78.3
Dinv43521 Davidia involucrata HOM05D006927 ORTHO05D009065 2.2e-75 286.6 158 82.3
Oeu034881.1 Olea europaea HOM05D006927 ORTHO05D009065 1.9e-74 283.5 156 83.3
CiPaw.02G047300 Carya illinoinensis HOM05D006927 ORTHO05D009065 4.4e-71 272.3 155 81.9
BolC2t06832H Brassica oleracea HOM05D006927 ORTHO05D009065 2.8e-70 269.6 155 80.0
BraA02t05404Z Brassica rapa HOM05D006927 ORTHO05D009065 6.3e-70 268.5 155 79.4
Aqoxy116s007 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 8.2e-70 268.1 277 52.3
HPP92_025548 Vanilla planifolia HOM05D006927 ORTHO05D009065 5.5e-66 255.4 181 66.9
MCO09G674 Micromonas commoda HOM05D006927 ORTHO05D009065 1.6e-65 253.8 278 43.5
Cre07.g313550 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D009065 8.8e-64 248.1 283 42.0
PRCOL_00002784 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 1.1e-58 231.1 291 43.3
CARHR195510 Cardamine hirsuta HOM05D006927 ORTHO05D009065 8.0e-57 224.9 161 67.1
Gohir.D11G237100 Gossypium hirsutum HOM05D006927 ORTHO05D009065 2.1e-49 200.3 110 83.6
unitig_26.g8847 Utricularia gibba HOM05D006927 ORTHO05D009065 1.2e-44 184.5 112 73.2
PRCOL_00000683 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 3.1e-32 143.3 285 35.4
Actinidia34774 Actinidia chinensis HOM05D006927 ORTHO05D009065 8.9e-32 141.7 79 79.7
unitig_26.g8846 Utricularia gibba HOM05D006927 ORTHO05D009065 8.9e-32 141.7 73 80.8
MCO02G275 Micromonas commoda HOM05D006927 ORTHO05D044296 9.2e-29 131.7 328 31.1
Thecc.05G234900 Theobroma cacao HOM05D006927 ORTHO05D009065 5.6e-26 122.5 60 88.3
Cre01.g025150 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D044296 2.6e-23 113.6 334 26.0
SEGI_38351 Sequoiadendron giganteum HOM05D006927 ORTHO05D009065 5.8e-23 112.5 69 68.1
BcaB08g36753 Brassica carinata HOM05D006927 ORTHO05D009065 7.1e-21 105.5 135 45.9
HPP92_025520 Vanilla planifolia HOM05D006927 ORTHO05D009065 2.7e-20 103.6 157 43.3
AagrBONN_evm.TU.Sc2ySwM_368.1936 Anthoceros agrestis HOM05D006927 ORTHO05D071668 2.1e-12 77.4 237 25.7
CBR_g4745 Chara braunii HOM05D000019 ORTHO05D000002 2.5e-10 70.5 68 44.1
PRCOL_00002844 Prasinoderma coloniale HOM05D006927 ORTHO05D049054 2.8e-09 67.0 130 35.4
MCO12G090 Micromonas commoda HOM05D006927 ORTHO05D049054 8.1e-09 65.5 338 23.7
C09p59490 Brassica napus HOM05D000005 ORTHO05D040849 1.5e-07 61.2 162 30.9


User provided reference genes

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