Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 5.4e-60 234.2 123 100.0
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 3.4e-54 214.9 115 96.5
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 4.9e-53 211.1 115 95.7
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 7.1e-52 207.2 115 93.9
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 7.1e-52 207.2 115 93.9
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 7.1e-52 207.2 115 93.9
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 7.1e-52 207.2 115 93.9
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 3.0e-50 201.8 115 91.3
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 2.4e-47 192.2 115 88.7
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 3.1e-47 191.8 114 90.4
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 5.3e-47 191.0 146 74.0
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 2.6e-46 188.7 117 85.5
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 3.4e-46 188.3 115 86.1
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 1.7e-45 186.0 115 83.5
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 2.2e-45 185.7 115 83.5
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 3.8e-45 184.9 115 85.2
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 3.8e-45 184.9 115 85.2
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 3.8e-45 184.9 115 85.2
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 3.8e-45 184.9 113 86.7
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 6.4e-45 184.1 115 85.2
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 8.4e-45 183.7 115 82.6
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 1.1e-44 183.3 115 83.5
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 1.1e-44 183.3 117 82.1
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 1.4e-44 183.0 115 82.6
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 1.9e-44 182.6 115 83.5
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 2.4e-44 182.2 115 84.3
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 2.4e-44 182.2 115 85.2
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 4.2e-44 181.4 115 81.7
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 5.4e-44 181.0 115 81.7
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 9.3e-44 180.3 115 83.5
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 9.3e-44 180.3 115 80.9
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 9.3e-44 180.3 115 81.7
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 1.2e-43 179.9 113 84.1
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.2e-43 179.9 123 75.6
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.6e-43 179.5 115 83.5
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 2.7e-43 178.7 115 82.6
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 2.7e-43 178.7 115 80.9
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 3.5e-43 178.3 115 82.6
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 6.0e-43 177.6 115 81.7
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 6.0e-43 177.6 123 74.0
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 6.0e-43 177.6 115 81.7
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 6.0e-43 177.6 113 83.2
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 1.0e-42 176.8 115 80.9
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 1.3e-42 176.4 113 83.2
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 1.3e-42 176.4 115 80.9
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.8e-42 176.0 115 80.9
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 1.8e-42 176.0 113 80.5
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 2.3e-42 175.6 115 83.5
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 3.0e-42 175.3 115 82.6
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 3.0e-42 175.3 115 78.3
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 3.9e-42 174.9 115 78.3
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 3.9e-42 174.9 113 82.3
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 5.1e-42 174.5 120 76.7
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 8.7e-42 173.7 111 82.0
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 8.7e-42 173.7 115 77.4
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 8.7e-42 173.7 115 77.4
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 1.5e-41 172.9 116 77.6
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 1.5e-41 172.9 115 78.3
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 5.6e-41 171.0 112 81.2
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 5.6e-41 171.0 112 81.2
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 5.6e-41 171.0 115 80.9
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 5.6e-41 171.0 113 78.8
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 5.6e-41 171.0 115 80.0
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 7.4e-41 170.6 115 79.1
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 7.4e-41 170.6 114 78.9
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 7.4e-41 170.6 115 75.7
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 9.6e-41 170.2 113 77.0
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 1.3e-40 169.9 115 77.4
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.3e-40 169.9 115 76.5
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.3e-40 169.9 115 76.5
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 1.3e-40 169.9 123 73.2
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 1.6e-40 169.5 115 76.5
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 1.6e-40 169.5 115 76.5
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 1.6e-40 169.5 115 76.5
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 2.8e-40 168.7 115 77.4
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 2.8e-40 168.7 113 77.0
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 2.8e-40 168.7 113 79.6
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 3.7e-40 168.3 114 78.9
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 4.8e-40 167.9 113 75.2
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 8.1e-40 167.2 107 84.1
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 8.1e-40 167.2 115 75.7
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 8.1e-40 167.2 117 74.4
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 1.1e-39 166.8 115 77.4
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 1.1e-39 166.8 113 75.2
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 2.4e-39 165.6 109 78.0
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 3.1e-39 165.2 115 73.9
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 3.1e-39 165.2 115 75.7
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 4.0e-39 164.9 115 74.8
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 5.3e-39 164.5 115 75.7
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 9.0e-39 163.7 106 80.2
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 1.2e-38 163.3 113 77.0
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 1.5e-38 162.9 115 74.8
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.5e-38 162.9 115 73.0
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.5e-38 162.9 115 73.0
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 2.0e-38 162.5 147 62.6
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 4.5e-38 161.4 115 73.9
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 4.5e-38 161.4 115 73.9
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 9.9e-38 160.2 145 64.8
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 2.9e-37 158.7 113 75.2
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 1.4e-36 156.4 113 69.9
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 1.4e-36 156.4 113 71.7
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 2.4e-36 155.6 115 71.3
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 2.4e-36 155.6 115 71.3
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 2.4e-36 155.6 115 71.3
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 2.4e-36 155.6 115 71.3
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 4.2e-36 154.8 115 71.3
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 5.5e-36 154.5 115 71.3
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 5.5e-36 154.5 115 70.4
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 9.3e-36 153.7 115 69.6
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 1.2e-35 153.3 105 78.1
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 1.8e-34 149.4 89 87.6
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 1.1e-33 146.7 115 67.8
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.5e-33 146.4 115 67.0
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 4.3e-33 144.8 80 91.2
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 2.1e-32 142.5 90 82.2
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 6.2e-32 141.0 77 92.2
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 1.1e-31 140.2 84 85.7
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.4e-31 139.8 92 80.4
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 1.5e-30 136.3 77 89.6
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 6.5e-29 131.0 83 79.5
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 6.5e-29 131.0 83 79.5
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 8.4e-29 130.6 101 69.3
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 8.4e-29 130.6 102 65.7
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 3.2e-28 128.6 95 75.8
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 2.3e-26 122.5 65 93.8
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.9e-25 119.4 68 89.7
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 2.5e-25 119.0 77 75.3
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 4.3e-25 118.2 78 80.8
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 9.7e-25 117.1 117 57.3
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.6e-24 116.3 119 53.8
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 8.2e-24 114.0 107 51.4
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 2.4e-23 112.5 104 56.7
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 5.0e-21 104.8 109 47.7
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 6.5e-21 104.4 110 54.5
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.9e-20 102.8 56 94.6
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 1.6e-19 99.8 69 75.4
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 2.3e-18 95.9 78 64.1
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 8.8e-18 94.0 78 62.8
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.3e-17 92.0 101 54.5
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 5.7e-17 91.3 86 53.5
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 8.2e-16 87.4 63 71.4
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 1.1e-15 87.0 51 88.2
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 1.4e-15 86.7 111 44.1
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 4.1e-15 85.1 47 89.4
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 5.3e-15 84.7 104 45.2
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 1.2e-14 83.6 104 50.0
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.5e-14 83.2 64 64.1
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 1.5e-14 83.2 50 84.0
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 3.4e-14 82.0 43 95.3
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 2.2e-13 79.3 51 80.4
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 2.9e-13 79.0 43 90.7
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 1.1e-12 77.0 96 50.0
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 3.2e-12 75.5 56 73.2
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 9.4e-12 73.9 43 86.0
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.6e-11 72.0 60 60.0
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 1.4e-10 70.1 100 45.0
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 1.4e-10 70.1 96 42.7
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.9e-10 68.6 93 49.5
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 2.0e-09 66.2 61 59.0
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.6e-09 65.9 59 50.8
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 5.7e-09 64.7 98 42.9


User provided reference genes

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