Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 5.3e-179 630.9 329 100.0
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 3.8e-169 598.2 332 94.3
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 8.2e-164 580.5 327 93.0
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.8e-163 579.3 332 91.3
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 4.1e-163 578.2 332 91.0
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.0e-162 575.9 332 90.7
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 2.7e-162 575.5 335 89.3
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 2.7e-162 575.5 335 89.3
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 3.5e-162 575.1 330 90.3
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 3.5e-162 575.1 332 89.8
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 4.5e-162 574.7 332 90.1
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 1.0e-161 573.5 332 89.8
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 1.3e-161 573.2 332 89.8
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 2.9e-161 572.0 335 89.0
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 2.9e-161 572.0 330 90.0
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 8.5e-161 570.5 327 90.2
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 8.5e-161 570.5 330 89.7
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 1.1e-160 570.1 330 89.7
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 1.5e-160 569.7 328 89.6
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 4.2e-160 568.2 325 90.5
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 7.2e-160 567.4 329 89.7
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 7.2e-160 567.4 329 88.8
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 1.2e-159 566.6 329 88.4
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 4.7e-159 564.7 332 88.6
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.4e-158 563.1 331 86.7
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 1.4e-158 563.1 330 88.5
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 3.0e-158 562.0 332 87.7
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 4.0e-158 561.6 328 88.4
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 6.8e-158 560.8 332 86.4
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 1.5e-157 559.7 332 85.5
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.5e-157 559.7 328 88.1
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 1.5e-157 559.7 328 87.5
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 2.6e-157 558.9 332 86.4
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 4.4e-157 558.1 332 85.5
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 5.7e-157 557.8 335 87.8
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 5.7e-157 557.8 335 87.8
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 1.7e-156 556.2 332 87.3
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 2.2e-156 555.8 332 85.2
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 6.3e-156 554.3 332 85.8
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 8.3e-156 553.9 328 85.7
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 8.3e-156 553.9 332 86.1
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.4e-155 553.1 327 87.2
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 1.8e-155 552.7 330 87.6
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 2.4e-155 552.4 332 84.6
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 2.4e-155 552.4 359 80.5
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 2.4e-155 552.4 332 87.0
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 3.1e-155 552.0 332 87.0
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 5.4e-155 551.2 332 84.6
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 5.4e-155 551.2 327 87.2
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 7.0e-155 550.8 331 87.3
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 7.0e-155 550.8 332 86.7
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 7.0e-155 550.8 332 84.3
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 9.1e-155 550.4 332 84.3
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 1.6e-154 549.7 332 85.2
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 1.6e-154 549.7 333 83.8
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 2.0e-154 549.3 338 85.8
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.0e-154 549.3 330 85.2
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.0e-154 549.3 330 85.2
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 2.0e-154 549.3 328 86.9
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 4.5e-154 548.1 330 84.8
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 4.5e-154 548.1 328 84.8
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 7.7e-154 547.4 332 84.6
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 1.7e-153 546.2 386 76.2
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 2.3e-153 545.8 328 84.5
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 2.3e-153 545.8 333 83.5
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 2.9e-153 545.4 332 86.1
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 2.9e-153 545.4 332 86.1
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 1.5e-152 543.1 329 84.5
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 1.9e-152 542.7 325 85.2
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 2.5e-152 542.3 327 84.1
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 3.2e-152 542.0 329 84.2
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 4.2e-152 541.6 329 84.2
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 4.2e-152 541.6 329 84.2
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 4.2e-152 541.6 332 89.5
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 5.5e-152 541.2 326 84.7
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 5.5e-152 541.2 329 83.9
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 7.2e-152 540.8 329 83.9
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 1.2e-151 540.0 329 83.9
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 1.2e-151 540.0 329 83.9
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 1.2e-151 540.0 329 83.9
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 1.2e-151 540.0 329 83.9
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 1.2e-151 540.0 330 84.2
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 2.1e-151 539.3 325 85.8
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 3.6e-151 538.5 330 85.5
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 4.7e-151 538.1 329 83.3
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 8.0e-151 537.3 331 82.5
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 8.0e-151 537.3 332 85.2
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 3.0e-150 535.4 373 78.6
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 3.4e-149 531.9 327 83.5
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 9.8e-149 530.4 455 66.2
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 1.3e-148 530.0 331 83.1
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 3.7e-148 528.5 331 82.8
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 1.3e-145 520.0 329 81.2
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 2.3e-145 519.2 314 83.8
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.1e-144 516.9 331 80.1
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 3.3e-144 515.4 331 83.1
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.6e-143 513.1 303 87.5
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 4.0e-142 508.4 330 80.9
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 4.0e-142 508.4 374 74.9
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 3.7e-140 501.9 330 80.6
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 6.4e-140 501.1 300 85.0
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 2.4e-139 499.2 328 79.0
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 2.0e-138 496.1 328 79.6
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.5e-136 490.0 301 84.1
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 1.8e-134 483.0 330 75.5
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 2.6e-133 479.2 335 74.6
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 1.7e-132 476.5 332 77.4
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 2.0e-130 469.5 328 76.2
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 1.0e-129 467.2 326 74.5
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 1.2e-127 460.3 326 75.8
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 1.1e-123 447.2 332 73.8
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 1.1e-123 447.2 279 82.1
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 1.2e-111 407.1 323 69.0
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 5.8e-109 398.3 324 62.0
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 3.8e-108 395.6 234 86.8
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 8.4e-108 394.4 330 63.6
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 1.2e-106 390.6 318 63.2
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 3.3e-104 382.5 233 84.1
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 1.3e-100 370.5 318 64.2
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 1.7e-100 370.2 273 71.4
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 6.2e-95 351.7 197 94.9
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 1.8e-94 350.1 331 64.4
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 8.4e-92 341.3 229 76.9
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 1.3e-89 334.0 240 69.6
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 3.3e-88 329.3 335 58.8
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 8.4e-84 314.7 220 80.0
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 4.6e-82 308.9 220 78.2
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 1.5e-77 293.9 220 76.4
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 8.5e-76 288.1 167 88.6
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 7.9e-74 281.6 165 87.3
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 1.4e-73 280.8 165 84.8
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 1.7e-71 273.9 333 45.6
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 2.1e-66 256.9 329 50.8
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 2.6e-64 250.0 135 91.9
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 7.0e-62 241.9 267 54.7
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 6.1e-58 228.8 130 89.2
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.4e-46 191.0 102 92.2
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 2.7e-45 186.8 162 63.6
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 9.4e-43 178.3 150 62.0
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 3.6e-42 176.4 92 100.0
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 6.1e-42 175.6 103 88.3
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 1.1e-35 154.8 89 84.3
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 9.5e-35 151.8 186 51.6
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 4.0e-33 146.4 69 100.0
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 6.8e-33 145.6 77 94.8
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 1.7e-31 141.0 91 82.4
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 4.3e-27 126.3 67 100.0
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 1.6e-26 124.4 72 81.9
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 2.8e-26 123.6 88 72.7
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 6.1e-26 122.5 80 78.8
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 8.9e-25 118.6 75 76.0
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 5.8e-24 115.9 72 83.3
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 7.5e-24 115.5 74 79.7
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 1.9e-22 110.9 69 79.7
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 1.3e-20 104.8 65 84.6
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 4.4e-08 63.2 34 85.3
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 5.8e-08 62.8 33 87.9
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 1.9e-06 57.8 85 47.1


User provided reference genes

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