Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 0.0e+00 1214.5 727 100.0
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 2.6e-295 1018.5 742 84.8
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 2.5e-253 879.0 742 74.8
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 8.9e-203 711.1 816 64.6
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 4.9e-201 705.3 815 64.8
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 4.2e-200 702.2 815 64.7
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 5.3e-195 685.3 815 63.6
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 7.0e-139 498.8 587 54.5
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 3.7e-132 476.5 760 45.4
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 3.8e-129 466.5 752 44.7
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 2.8e-124 450.3 794 41.8
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 1.7e-121 441.0 728 44.2
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 6.1e-119 432.6 746 45.6
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 2.2e-116 424.1 738 41.9
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 1.3e-113 414.8 842 39.4
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 3.9e-113 413.3 782 40.7
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 8.6e-113 412.1 557 52.1
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 1.5e-112 411.4 754 44.7
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 1.9e-112 411.0 569 50.3
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 5.6e-112 409.5 746 41.2
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 2.8e-111 407.1 766 42.7
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 2.6e-109 400.6 754 42.3
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 7.5e-109 399.1 772 41.7
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 1.6e-106 391.3 589 45.5
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 1.5e-104 384.8 792 39.1
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 1.9e-104 384.4 790 38.1
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 4.3e-104 383.3 583 45.1
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 5.6e-104 382.9 790 38.2
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 1.6e-103 381.3 757 41.0
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 4.7e-103 379.8 841 38.5
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 2.0e-101 374.4 548 46.7
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 4.9e-100 369.8 576 46.4
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 6.4e-100 369.4 587 45.0
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 6.4e-100 369.4 581 45.3
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 4.6e-98 363.2 570 45.8
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 8.6e-97 359.0 801 39.3
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.4e-94 351.7 604 43.7
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 5.2e-94 349.7 583 45.6
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 3.7e-92 343.6 588 44.7
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 1.4e-91 341.7 556 48.0
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 1.9e-91 341.3 580 44.0
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 2.7e-90 337.4 567 43.9
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 3.0e-89 334.0 578 45.3
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 8.6e-89 332.4 490 46.1
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.1e-88 332.0 580 44.3
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 5.6e-88 329.7 873 34.8
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 5.6e-88 329.7 581 43.0
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 9.6e-88 328.9 587 45.3
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 6.2e-87 326.2 536 45.7
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 2.2e-84 317.8 568 43.5
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 3.2e-83 313.9 463 49.2
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 6.0e-82 309.7 579 41.3
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.0e-81 308.9 586 40.8
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 3.3e-80 303.9 673 39.7
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 4.8e-79 300.1 565 40.9
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 6.2e-79 299.7 646 40.2
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 1.1e-78 298.9 572 41.6
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.0e-77 294.7 623 40.1
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.3e-76 292.0 560 42.9
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 1.1e-75 288.9 740 36.8
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 1.9e-75 288.1 493 44.4
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 5.4e-75 286.6 592 40.2
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 2.1e-74 284.6 766 36.4
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 5.1e-73 280.0 297 60.3
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 6.6e-73 279.6 525 41.3
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.5e-72 278.5 491 44.4
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 1.9e-72 278.1 529 42.0
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 4.3e-72 276.9 558 41.6
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 1.6e-71 275.0 578 41.2
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 2.8e-71 274.2 508 42.1
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 2.4e-70 271.2 571 41.0
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.5e-69 268.5 733 36.3
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 3.8e-68 263.8 546 41.2
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.1e-67 262.3 595 38.7
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 1.4e-67 261.9 468 43.4
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 4.2e-67 260.4 567 40.6
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.8e-65 255.0 557 39.9
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 1.5e-64 251.9 531 39.7
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 1.5e-64 251.9 567 39.0
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 2.2e-60 238.0 566 34.6
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 7.1e-59 233.0 563 36.6
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 6.7e-57 226.5 551 37.2
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 4.3e-56 223.8 556 37.9
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 2.1e-55 221.5 530 36.4
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 3.7e-55 220.7 531 37.1
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 4.8e-55 220.3 574 35.2
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 4.8e-55 220.3 574 35.2
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 8.2e-55 219.5 342 44.2
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 1.4e-54 218.8 565 35.8
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 1.4e-54 218.8 488 39.8
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 1.5e-53 215.3 582 34.7
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 3.4e-53 214.2 525 36.2
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 4.5e-53 213.8 575 35.1
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 7.6e-53 213.0 570 35.6
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 1.3e-52 212.2 579 34.4
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 8.4e-52 209.5 580 35.3
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 5.5e-51 206.8 545 35.8
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 9.3e-51 206.1 597 33.8
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 2.7e-50 204.5 518 36.9
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 4.6e-50 203.8 546 34.6
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 7.9e-50 203.0 591 33.0
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 7.9e-50 203.0 593 33.1
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 6.7e-49 199.9 581 33.4
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 1.9e-48 198.4 619 32.5
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 3.4e-45 187.6 473 33.6
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 7.7e-45 186.4 546 33.0
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 3.8e-44 184.1 589 32.6
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 3.8e-44 184.1 571 32.9
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 6.5e-44 183.3 587 32.5
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 1.9e-43 181.8 588 33.2
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 1.5e-40 172.2 566 32.5
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 1.5e-40 172.2 562 33.1
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 1.0e-36 159.5 528 33.0
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 2.1e-34 151.8 346 40.5
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 1.1e-32 146.0 408 34.8
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 1.3e-31 142.5 373 35.1
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 7.7e-29 133.3 615 28.0
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 5.5e-27 127.1 617 28.4
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 5.2e-25 120.6 615 27.3
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 5.7e-24 117.1 285 39.3
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 8.2e-23 113.2 476 31.1
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 7.0e-22 110.2 198 42.4
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 3.8e-20 104.4 595 27.6
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 4.7e-18 97.4 165 40.0
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 1.3e-12 79.3 367 29.4
Oeu026567.1 Olea europaea HOM05D005926 ORTHO05D007001 7.2e-11 73.6 307 27.7


User provided reference genes

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