Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 9.4e-107 390.2 195 100.0
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 3.1e-102 375.2 195 95.4
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 5.9e-101 370.9 195 96.4
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 9.7e-88 327.0 196 83.2
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 2.9e-76 288.9 195 74.9
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 2.5e-75 285.8 197 72.6
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.7e-71 273.1 195 70.8
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 3.7e-71 271.9 201 70.1
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 4.9e-71 271.6 200 68.5
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 6.3e-71 271.2 198 69.7
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 1.8e-70 269.6 195 70.8
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.8e-70 269.6 195 70.3
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 4.1e-70 268.5 195 69.2
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 5.4e-70 268.1 198 68.7
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 5.4e-70 268.1 198 69.7
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 7.0e-70 267.7 198 68.7
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 9.2e-70 267.3 199 66.8
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 2.7e-69 265.8 199 67.3
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 5.9e-69 264.6 198 66.7
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 5.9e-69 264.6 198 68.7
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 5.9e-69 264.6 198 67.7
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 6.6e-68 261.2 198 66.7
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 8.6e-68 260.8 204 66.2
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 8.6e-68 260.8 198 67.7
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 8.6e-68 260.8 198 67.7
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.5e-67 260.0 201 66.7
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.9e-67 259.6 204 65.7
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.9e-67 259.6 198 67.2
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 2.5e-67 259.2 198 65.2
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 4.3e-67 258.5 204 65.7
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 5.6e-67 258.1 198 67.7
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 7.3e-67 257.7 200 66.5
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 1.2e-66 256.9 198 66.2
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 1.2e-66 256.9 198 64.1
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 2.1e-66 256.1 198 64.6
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 3.6e-66 255.4 210 63.8
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 6.1e-66 254.6 197 67.0
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 6.1e-66 254.6 200 66.5
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 8.0e-66 254.2 198 64.1
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 1.0e-65 253.8 195 66.2
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 1.8e-65 253.1 198 66.7
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 2.3e-65 252.7 199 65.3
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 3.0e-65 252.3 207 62.3
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 3.0e-65 252.3 199 65.8
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 4.0e-65 251.9 198 62.6
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 8.9e-65 250.8 198 62.6
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 8.9e-65 250.8 198 64.6
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 4.4e-64 248.4 191 64.9
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 5.7e-64 248.1 196 64.8
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 9.8e-64 247.3 200 64.5
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 9.8e-64 247.3 198 64.6
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 9.8e-64 247.3 198 64.6
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 3.7e-63 245.4 191 64.9
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 3.7e-63 245.4 198 63.6
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 4.9e-63 245.0 196 62.8
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 6.4e-63 244.6 198 62.6
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.1e-62 243.8 191 64.9
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 3.2e-62 242.3 190 63.7
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 3.2e-62 242.3 189 63.0
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 4.1e-62 241.9 196 61.7
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 7.0e-62 241.1 199 64.3
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 7.0e-62 241.1 200 62.5
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 1.6e-61 240.0 199 61.8
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 2.0e-61 239.6 198 60.6
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 3.5e-61 238.8 198 59.1
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 3.5e-61 238.8 192 63.0
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 3.0e-60 235.7 207 59.4
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 6.6e-60 234.6 184 63.0
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 1.9e-59 233.0 198 57.6
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 1.9e-59 233.0 211 58.8
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 2.5e-59 232.6 207 59.4
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 5.6e-59 231.5 191 60.7
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 9.5e-59 230.7 207 58.5
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 9.5e-59 230.7 183 63.9
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 1.6e-58 229.9 211 58.8
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 2.8e-58 229.2 196 62.8
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 3.6e-58 228.8 197 61.9
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 4.7e-58 228.4 197 61.9
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 2.6e-56 222.6 199 55.3
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 3.4e-56 222.2 195 61.0
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 1.3e-55 220.3 213 56.3
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 1.7e-55 219.9 192 59.9
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 1.7e-55 219.9 175 62.9
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 3.7e-55 218.8 192 59.9
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 8.3e-55 217.6 162 65.4
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 8.3e-55 217.6 177 63.3
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.4e-54 216.9 195 59.0
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 1.4e-54 216.9 196 60.7
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 5.4e-54 214.9 196 58.2
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 7.0e-54 214.5 195 59.5
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 7.0e-54 214.5 198 57.6
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 9.2e-54 214.2 199 58.3
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 9.2e-54 214.2 199 59.8
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 1.2e-53 213.8 215 54.9
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 2.0e-53 213.0 198 60.1
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 5.0e-52 208.4 198 56.6
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 6.6e-52 208.0 195 58.5
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 1.1e-51 207.2 299 44.1
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 1.5e-51 206.8 198 55.6
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.9e-51 206.5 155 66.5
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 3.3e-51 205.7 199 56.8
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 1.2e-50 203.8 199 56.3
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 1.2e-50 203.8 198 58.6
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 2.8e-50 202.6 196 57.1
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 1.1e-49 200.7 195 54.9
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 6.8e-49 198.0 195 54.4
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 1.5e-48 196.8 198 54.5
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 1.5e-48 196.8 198 54.5
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 1.5e-48 196.8 198 54.5
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 2.6e-48 196.1 195 54.9
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 4.4e-48 195.3 198 54.0
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 9.9e-48 194.1 195 52.8
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 9.9e-48 194.1 196 52.6
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 1.3e-47 193.7 200 54.5
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 1.3e-47 193.7 260 43.5
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 8.3e-47 191.0 194 54.1
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 1.6e-45 186.8 199 55.8
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 3.0e-44 182.6 191 53.9
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 6.6e-44 181.4 193 51.8
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.1e-43 180.6 195 51.8
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 1.1e-43 180.6 159 61.0
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 1.4e-41 173.7 179 50.8
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 5.8e-40 168.3 171 54.4
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 2.9e-39 166.0 188 50.5
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 7.1e-38 161.4 136 58.8
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 9.2e-38 161.0 163 52.8
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 1.6e-37 160.2 127 62.2
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 4.6e-37 158.7 140 57.1
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 7.6e-32 141.4 187 47.6
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 7.6e-32 141.4 102 67.6
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 1.3e-31 140.6 133 51.9
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 7.1e-30 134.8 100 67.0
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 7.8e-29 131.3 96 67.7
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 2.8e-26 122.9 125 52.8
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 1.5e-24 117.1 106 55.7
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 1.3e-23 114.0 124 50.0
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.7e-23 113.6 104 58.7
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.1e-22 110.9 103 56.3
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 1.1e-22 110.9 185 39.5
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 1.9e-22 110.2 116 53.4
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 2.4e-22 109.8 99 59.6
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 5.4e-22 108.6 116 53.4
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 1.2e-21 107.5 114 51.8
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 1.6e-21 107.1 140 47.9
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 2.3e-20 103.2 101 56.4
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 8.7e-20 101.3 119 45.4
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 3.7e-18 95.9 201 33.8
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 9.0e-17 91.3 91 54.9
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 5.5e-14 82.0 204 33.3
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.8e-12 77.0 81 58.0
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 3.9e-12 75.9 150 37.3
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 3.1e-09 66.2 64 50.0
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 2.0e-08 63.5 64 50.0
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.6e-08 63.2 104 42.3
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 5.8e-08 62.0 51 62.7
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 4.9e-07 58.9 52 51.9
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 8.4e-07 58.2 63 47.6


User provided reference genes

Program Settings