Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 3.6e-151 538.5 330 100.0
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 6.0e-98 361.7 331 74.9
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 9.1e-70 268.1 325 52.6
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 2.6e-69 266.5 433 43.6
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 2.0e-64 250.4 318 48.7
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.6e-64 250.0 313 50.2
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 3.3e-64 249.6 308 50.0
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.0e-61 240.4 313 49.2
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 5.0e-60 235.7 330 44.8
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 5.0e-60 235.7 332 46.1
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.5e-59 233.4 293 57.3
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 5.5e-59 232.3 294 53.4
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.6e-58 230.7 294 50.0
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.0e-57 226.1 311 52.1
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 2.6e-56 223.4 331 45.6
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 2.6e-56 223.4 314 46.5
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 1.1e-54 218.0 310 47.4
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.4e-54 217.6 291 55.3
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 1.8e-54 217.2 319 49.2
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 1.8e-54 217.2 330 42.1
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 3.1e-54 216.5 331 44.1
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 3.1e-54 216.5 323 46.4
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 5.4e-54 215.7 289 54.0
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 9.1e-54 214.9 330 43.0
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 7.7e-53 211.8 319 43.3
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 6.5e-52 208.8 318 44.0
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 8.5e-52 208.4 307 50.8
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 7.2e-51 205.3 318 41.2
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.0e-49 201.4 303 43.2
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.8e-49 200.7 330 41.2
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 2.3e-49 200.3 332 45.2
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 2.3e-49 200.3 319 41.1
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 4.0e-49 199.5 326 40.8
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 6.8e-49 198.7 326 41.1
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 2.0e-48 197.2 326 40.5
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 2.8e-47 193.4 306 41.8
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 2.0e-45 187.2 316 39.6
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 3.5e-45 186.4 309 41.7
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 4.5e-45 186.0 331 43.2
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 7.7e-45 185.3 333 39.9
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 1.0e-44 184.9 324 42.0
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 3.8e-44 183.0 186 54.8
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 5.0e-44 182.6 305 40.0
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 1.5e-43 181.0 316 40.2
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 7.2e-43 178.7 207 50.2
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 1.2e-42 177.9 318 42.8
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 1.6e-42 177.6 322 37.9
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 4.7e-42 176.0 332 38.3
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 6.1e-42 175.6 187 52.4
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 8.0e-42 175.3 296 39.9
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 1.4e-41 174.5 186 54.8
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 4.0e-41 172.9 197 52.3
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 5.2e-41 172.6 227 45.4
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 8.9e-41 171.8 192 53.6
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 1.2e-40 171.4 328 36.6
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 2.6e-40 170.2 305 40.3
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 9.8e-40 168.3 340 37.9
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 2.2e-39 167.2 313 37.1
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 2.9e-39 166.8 297 38.4
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 8.3e-39 165.2 182 49.5
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 1.4e-38 164.5 296 40.5
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.4e-38 163.7 187 51.3
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 5.4e-38 162.5 299 41.1
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 1.2e-37 161.4 298 39.3
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 2.0e-37 160.6 331 37.8
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.7e-37 160.2 187 50.3
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 2.7e-37 160.2 337 37.4
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 4.6e-37 159.5 320 37.2
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 5.9e-37 159.1 339 36.9
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 5.9e-37 159.1 299 37.5
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 5.9e-37 159.1 236 43.2
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 7.8e-37 158.7 231 45.0
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 1.0e-36 158.3 348 36.5
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 1.7e-36 157.5 325 37.2
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.9e-36 156.8 170 49.4
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 6.6e-36 155.6 170 48.8
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 1.1e-35 154.8 307 36.5
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.1e-35 154.8 217 42.9
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 2.5e-35 153.7 332 41.0
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 2.5e-35 153.7 170 48.2
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 4.3e-35 152.9 306 35.6
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 5.6e-35 152.5 346 36.1
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 7.3e-35 152.1 341 34.0
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 9.5e-35 151.8 170 48.2
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 1.6e-34 151.0 183 45.4
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 1.6e-34 151.0 319 33.9
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 1.6e-34 151.0 299 37.8
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 2.1e-34 150.6 162 47.5
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 2.1e-34 150.6 312 35.3
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.1e-34 150.6 170 48.2
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 8.0e-34 148.7 134 59.7
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.0e-33 148.3 307 35.5
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 1.0e-33 148.3 351 33.6
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.0e-33 148.3 330 35.8
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 4.0e-33 146.4 344 34.6
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 5.2e-33 146.0 337 33.8
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 5.2e-33 146.0 332 35.5
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 5.2e-33 146.0 332 36.4
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 5.8e-32 142.5 299 34.1
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 7.5e-32 142.1 183 46.4
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 9.8e-32 141.7 222 43.2
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 9.8e-32 141.7 181 43.6
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 1.7e-31 141.0 216 42.1
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 1.1e-30 138.3 155 53.5
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 1.1e-30 138.3 202 42.6
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.1e-30 138.3 173 44.5
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.9e-30 137.5 225 42.2
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 3.2e-30 136.7 244 41.0
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 4.1e-30 136.3 319 33.5
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 5.4e-30 136.0 246 40.2
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 1.2e-29 134.8 331 34.4
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 2.0e-29 134.0 211 39.8
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 2.7e-29 133.7 292 35.6
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 6.0e-29 132.5 312 33.7
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 7.8e-29 132.1 164 47.0
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 2.3e-28 130.6 166 45.2
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 3.9e-28 129.8 297 34.3
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 8.6e-28 128.6 191 40.8
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 1.9e-27 127.5 296 33.8
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 1.9e-27 127.5 297 32.3
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 4.3e-27 126.3 154 48.1
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 4.3e-27 126.3 154 48.1
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.6e-26 124.4 103 62.1
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 1.6e-26 124.4 195 38.5
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 2.1e-26 124.0 151 49.7
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 2.1e-26 124.0 151 49.7
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 2.8e-26 123.6 126 50.8
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 8.1e-26 122.1 301 33.6
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 1.1e-25 121.7 297 34.0
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 1.1e-25 121.7 297 34.0
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 1.4e-25 121.3 152 44.7
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 2.3e-25 120.6 177 41.8
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 3.1e-25 120.2 197 39.6
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 5.2e-25 119.4 282 34.0
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 5.2e-25 119.4 259 34.4
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 8.9e-25 118.6 222 40.1
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 8.9e-25 118.6 307 33.9
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 1.2e-24 118.2 159 39.6
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 2.0e-24 117.5 297 34.3
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 4.4e-24 116.3 171 39.8
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 2.2e-23 114.0 130 49.2
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 3.7e-23 113.2 286 30.4
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 1.1e-22 111.7 300 31.0
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 1.1e-22 111.7 146 43.2
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 1.2e-21 108.2 168 39.3
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 1.0e-20 105.1 170 38.8
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 1.5e-19 101.3 300 30.3
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.4e-17 94.7 81 56.8
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 2.2e-15 87.4 76 56.6
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 8.4e-15 85.5 162 37.7
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 1.1e-14 85.1 239 30.1
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 3.9e-12 76.6 132 40.9
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 4.3e-11 73.2 74 50.0
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 9.6e-11 72.0 182 35.2
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 1.2e-10 71.6 55 56.4
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 2.6e-08 63.9 53 54.7
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 5.8e-08 62.8 150 36.7


User provided reference genes

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