Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 1.6e-123 446.0 213 100.0
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 2.8e-112 408.7 213 90.6
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 1.3e-101 373.2 213 81.2
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 6.4e-101 370.9 213 80.8
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 7.1e-100 367.5 213 80.8
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 1.2e-99 366.7 210 80.0
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 1.6e-99 366.3 211 78.7
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.3e-98 363.2 213 78.9
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 2.3e-98 362.5 211 77.7
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 1.1e-97 360.1 207 79.7
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.1e-97 360.1 207 78.3
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 1.5e-97 359.8 207 79.7
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 1.9e-97 359.4 213 77.5
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 5.6e-97 357.8 211 76.8
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 7.3e-97 357.5 207 80.2
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 9.6e-97 357.1 207 79.2
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 9.6e-97 357.1 206 80.1
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 1.6e-96 356.3 207 77.8
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 1.6e-96 356.3 206 79.1
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 2.1e-96 355.9 198 82.3
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 2.1e-96 355.9 213 78.4
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 2.8e-96 355.5 213 78.9
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 2.8e-96 355.5 207 78.7
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 2.8e-96 355.5 206 79.1
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 3.6e-96 355.1 203 80.3
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 3.6e-96 355.1 207 77.3
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 4.8e-96 354.8 207 78.3
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 6.2e-96 354.4 207 78.3
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 8.1e-96 354.0 213 77.5
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 8.1e-96 354.0 211 76.3
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 8.1e-96 354.0 211 76.3
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 1.8e-95 352.8 207 77.8
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 3.1e-95 352.1 204 79.4
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 6.9e-95 350.9 211 74.9
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 9.0e-95 350.5 207 77.8
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 1.2e-94 350.1 206 76.2
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 1.5e-94 349.7 213 74.6
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 1.5e-94 349.7 206 79.1
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 3.4e-94 348.6 207 78.3
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 4.5e-94 348.2 206 76.2
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 4.5e-94 348.2 213 76.5
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 4.5e-94 348.2 213 76.5
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 5.8e-94 347.8 206 76.2
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 5.8e-94 347.8 206 75.7
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 5.8e-94 347.8 206 75.7
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 5.8e-94 347.8 206 75.7
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 7.6e-94 347.4 213 77.0
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 7.6e-94 347.4 206 78.2
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 1.3e-93 346.7 206 76.2
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 1.3e-93 346.7 206 77.2
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 1.7e-93 346.3 213 73.7
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 2.2e-93 345.9 203 78.3
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 2.2e-93 345.9 206 76.2
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 2.2e-93 345.9 206 75.2
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 2.9e-93 345.5 213 76.5
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 2.9e-93 345.5 213 76.1
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 2.9e-93 345.5 206 75.7
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 4.9e-93 344.7 207 76.3
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 6.4e-93 344.4 213 76.1
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 8.4e-93 344.0 213 73.2
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.1e-92 343.6 213 73.7
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 1.1e-92 343.6 206 76.2
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 1.4e-92 343.2 207 75.4
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 1.9e-92 342.8 230 70.0
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.9e-92 342.8 207 75.8
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.9e-92 342.8 213 75.6
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 1.9e-92 342.8 206 75.2
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 2.4e-92 342.4 206 76.2
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 2.4e-92 342.4 208 75.5
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 3.2e-92 342.0 211 73.5
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 7.1e-92 340.9 206 73.8
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 7.1e-92 340.9 200 75.0
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 1.6e-91 339.7 206 74.3
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 2.7e-91 339.0 207 75.4
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 2.7e-91 339.0 206 75.2
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 4.6e-91 338.2 207 74.4
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 4.6e-91 338.2 204 77.0
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 6.0e-91 337.8 206 72.8
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 6.0e-91 337.8 208 75.0
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 1.0e-90 337.0 206 75.7
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 1.8e-90 336.3 204 76.0
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 2.3e-90 335.9 206 73.8
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 3.0e-90 335.5 209 74.2
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 3.0e-90 335.5 204 75.5
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 3.9e-90 335.1 200 76.0
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 5.6e-89 331.3 206 73.3
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 7.4e-89 330.9 193 78.8
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 9.6e-89 330.5 253 65.6
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 6.2e-88 327.8 211 70.1
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 6.2e-88 327.8 206 71.4
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 8.1e-88 327.4 207 70.0
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 1.1e-87 327.0 206 70.9
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 1.8e-87 326.2 231 66.2
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 2.4e-87 325.9 209 69.4
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 4.0e-87 325.1 208 69.7
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 5.3e-87 324.7 209 72.7
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 9.0e-87 323.9 206 70.4
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 1.5e-86 323.2 206 70.4
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 2.0e-86 322.8 206 69.9
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 3.4e-86 322.0 206 70.4
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 4.5e-86 321.6 204 71.1
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 4.5e-86 321.6 204 71.1
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 5.8e-86 321.2 204 71.1
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 7.6e-86 320.9 206 69.9
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 7.6e-86 320.9 204 71.1
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 7.6e-86 320.9 207 70.0
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 1.7e-85 319.7 206 69.4
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 2.2e-85 319.3 206 69.4
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 6.5e-85 317.8 202 71.3
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 2.5e-84 315.8 215 70.7
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 9.3e-84 313.9 204 72.1
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 7.9e-83 310.8 204 70.1
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 5.1e-82 308.1 166 85.5
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 1.1e-81 307.0 212 68.9
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 1.9e-81 306.2 199 70.9
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 2.1e-80 302.8 204 70.6
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 3.1e-79 298.9 293 52.9
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 4.1e-79 298.5 172 81.4
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 2.2e-77 292.7 172 79.7
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 4.6e-67 258.5 145 80.7
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 6.1e-67 258.1 145 80.7
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 5.7e-65 251.5 423 38.1
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 2.0e-62 243.0 171 69.0
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 3.8e-61 238.8 145 73.1
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 8.5e-61 237.7 204 58.3
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 2.9e-53 212.6 138 71.7
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 3.3e-49 199.1 208 46.6
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 4.4e-49 198.7 113 79.6
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 4.8e-48 195.3 200 49.0
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 3.5e-46 189.1 125 71.2
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.1e-44 184.1 109 80.7
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 5.7e-41 171.8 195 45.6
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 7.0e-39 164.9 143 54.5
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 3.0e-34 149.4 95 72.6
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 3.4e-33 146.0 88 72.7
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 5.7e-33 145.2 115 64.3
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 3.5e-30 136.0 74 82.4
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 1.3e-29 134.0 95 65.3
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 2.1e-19 100.1 72 62.5
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 4.7e-19 99.0 72 63.9
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 5.2e-18 95.5 66 65.2
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 2.0e-17 93.6 62 67.7
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.6e-14 84.0 59 66.1
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 8.9e-10 68.2 40 82.5
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 9.8e-09 64.7 43 72.1
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 7.1e-07 58.5 59 54.2
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 9.2e-07 58.2 35 62.9
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 6.0e-06 55.5 35 65.7


User provided reference genes

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