Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1055500 Malus domestica HOM05D003771 ORTHO05D004396 6.6e-274 946.8 496 100.0
MD15G1427900 Malus domestica HOM05D003771 ORTHO05D004396 1.8e-199 699.5 455 84.8
MD04G1002300 Malus domestica HOM05D003771 ORTHO05D004396 8.8e-186 654.1 455 79.6
RcHm_v2.0_Chr4g0384941 Rosa chinensis HOM05D003771 ORTHO05D004396 4.1e-183 645.2 455 77.8
FvH4_4g00210 Fragaria vesca HOM05D003771 ORTHO05D004396 2.7e-182 642.5 455 77.4
FAN17G2138 Fragaria x ananassa HOM05D003771 ORTHO05D004396 3.8e-181 638.6 455 76.9
FAN22G1465 Fragaria x ananassa HOM05D003771 ORTHO05D004396 2.3e-178 629.4 479 73.5
FAN12G2055 Fragaria x ananassa HOM05D003771 ORTHO05D004396 3.0e-178 629.0 479 73.5
CANSAT64G2070 Cannabis sativa HOM05D003771 ORTHO05D004396 9.2e-175 617.5 456 74.1
Haze_19080 Corylus avellana HOM05D003771 ORTHO05D004396 1.6e-174 616.7 457 73.7
TWI34G0561 Tripterygium wilfordii HOM05D003771 ORTHO05D004396 6.6e-173 611.3 455 73.6
CiPaw.15G162500 Carya illinoinensis HOM05D003771 ORTHO05D004396 8.0e-171 604.4 455 72.1
Atru.chr12.1314 Acer truncatum HOM05D003771 ORTHO05D004396 1.5e-169 600.1 469 71.6
QL11p007303 Quercus lobata HOM05D003771 ORTHO05D004396 2.6e-169 599.4 470 70.2
Nitab4.5_0000019g0010 Nicotiana tabacum HOM05D003771 ORTHO05D004396 3.7e-168 595.5 467 71.1
GSVIVG01022289001 Vitis vinifera HOM05D003771 ORTHO05D004396 4.9e-168 595.1 470 71.1
ClCG04G000570 Citrullus lanatus HOM05D003771 ORTHO05D004396 5.4e-167 591.7 455 72.1
MELO3C009070.2 Cucumis melo HOM05D003771 ORTHO05D004396 5.4e-167 591.7 455 72.1
COL.COLO4_37655 Corchorus olitorius HOM05D003771 ORTHO05D004396 9.2e-167 590.9 455 70.8
Dinv12623 Davidia involucrata HOM05D003771 ORTHO05D004396 1.6e-166 590.1 469 71.2
CsaV3_4G031470 Cucumis sativus L. HOM05D003771 ORTHO05D004396 3.5e-166 589.0 455 71.6
Sabra18G0126200 Salix brachista HOM05D003771 ORTHO05D004396 4.6e-166 588.6 478 68.8
Potri.018G149400 Populus trichocarpa HOM05D003771 ORTHO05D004396 1.0e-165 587.4 467 69.8
Thecc.09G205400 Theobroma cacao HOM05D003771 ORTHO05D004396 2.3e-165 586.3 455 70.5
BcaB01g04159 Brassica carinata HOM05D003771 ORTHO05D004396 1.9e-164 583.2 448 70.5
Lj4g0002190 Lotus japonicus HOM05D003771 ORTHO05D004396 2.5e-164 582.8 455 71.0
CAN.G587.52 Capsicum annuum HOM05D003771 ORTHO05D004396 3.3e-164 582.4 467 70.0
Migut.L01925 Erythranthe guttata HOM05D003771 ORTHO05D004396 7.3e-164 581.3 467 70.0
Cc06_g23760 Coffea canephora HOM05D003771 ORTHO05D004396 2.1e-163 579.7 467 70.0
Sed0018603 Sechium edule HOM05D003771 ORTHO05D004396 2.1e-163 579.7 455 71.4
Actinidia02465 Actinidia chinensis HOM05D003771 ORTHO05D004396 2.8e-163 579.3 469 69.1
CSS0004980 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 3.6e-163 578.9 469 69.1
Ciclev10007279m.g Citrus clementina HOM05D003771 ORTHO05D004396 4.7e-163 578.6 455 71.2
Sp6g13880 Schrenkiella parvula HOM05D003771 ORTHO05D004396 4.7e-163 578.6 455 69.7
Gorai.009G000200 Gossypium raimondii HOM05D003771 ORTHO05D004396 6.2e-163 578.2 455 70.1
Carub.0013s0005 Capsella rubella HOM05D003771 ORTHO05D004396 8.1e-163 577.8 455 70.1
Thhalv10012482m.g Eutrema salsugineum HOM05D003771 ORTHO05D004396 1.1e-162 577.4 455 70.1
Gohir.A05G000200 Gossypium hirsutum HOM05D003771 ORTHO05D004396 1.4e-162 577.0 455 69.9
Sopen05g020060 Solanum pennellii HOM05D003771 ORTHO05D004396 1.4e-162 577.0 467 69.6
AL3G44140 Arabidopsis lyrata HOM05D003771 ORTHO05D004396 1.8e-162 576.6 455 69.9
CARHR104050 Cardamine hirsuta HOM05D003771 ORTHO05D004396 1.8e-162 576.6 455 69.9
Gohir.D05G000400 Gossypium hirsutum HOM05D003771 ORTHO05D004396 1.8e-162 576.6 455 69.9
Phvul.002G302000 Phaseolus vulgaris HOM05D003771 ORTHO05D004396 1.8e-162 576.6 461 69.2
VMungo0251G3699 Vigna mungo HOM05D003771 ORTHO05D004396 3.1e-162 575.9 456 69.7
Nn3g19428 Nelumbo nucifera HOM05D003771 ORTHO05D004396 4.0e-162 575.5 469 67.8
BcaC04g20648 Brassica carinata HOM05D003771 ORTHO05D004396 5.2e-162 575.1 455 69.5
Oeu008632.1 Olea europaea HOM05D003771 ORTHO05D004396 5.2e-162 575.1 459 70.4
Manes.02G223900 Manihot esculenta HOM05D003771 ORTHO05D004396 1.2e-161 573.9 467 68.7
BcaC01g06134 Brassica carinata HOM05D003771 ORTHO05D004396 1.5e-161 573.5 455 69.0
BcaB08g35516 Brassica carinata HOM05D003771 ORTHO05D004396 2.0e-161 573.2 455 69.5
Duzib168G1435 Durio zibethinus HOM05D003771 ORTHO05D004396 2.0e-161 573.2 455 69.2
AT2G07360 Arabidopsis thaliana HOM05D003771 ORTHO05D004396 5.8e-161 571.6 457 69.8
THA.LOC104808936 Tarenaya hassleriana HOM05D003771 ORTHO05D004396 5.8e-161 571.6 458 70.3
Psat7g020760 Pisum sativum HOM05D003771 ORTHO05D004396 7.5e-161 571.2 455 70.1
Aa31sc328G10 Aethionema arabicum HOM05D003771 ORTHO05D004396 1.7e-160 570.1 492 65.2
DCAR_020453 Daucus carota HOM05D003771 ORTHO05D004396 1.7e-160 570.1 467 67.9
Lalb_Chr05g0223831 Lupinus albus HOM05D003771 ORTHO05D004396 2.2e-160 569.7 455 69.5
TPR.G25458 Trifolium pratense HOM05D003771 ORTHO05D004396 2.9e-160 569.3 455 69.7
A03p16060 Brassica napus HOM05D003771 ORTHO05D004396 4.9e-160 568.5 457 68.7
BraA03t10897Z Brassica rapa HOM05D003771 ORTHO05D004396 4.9e-160 568.5 457 68.7
Eucgr.E04317 Eucalyptus grandis HOM05D003771 ORTHO05D004396 1.9e-159 566.6 469 68.9
Medtr8g100105 Medicago truncatula HOM05D003771 ORTHO05D004396 1.9e-159 566.6 455 69.2
PGR044G2258 Punica granatum HOM05D003771 ORTHO05D004396 9.2e-159 564.3 469 68.2
C03p18900 Brassica napus HOM05D003771 ORTHO05D004396 1.2e-158 563.9 457 68.3
Ca_17443_v3 Cicer arietinum L. HOM05D003771 ORTHO05D004396 2.7e-158 562.8 455 68.8
Glyma.05G220300 Glycine max HOM05D003771 ORTHO05D004396 3.5e-158 562.4 455 69.2
MSTRG.26513 Avicennia marina HOM05D003771 ORTHO05D004396 4.6e-158 562.0 466 68.5
Nn1g00173 Nelumbo nucifera HOM05D003771 ORTHO05D004396 4.6e-158 562.0 470 68.3
Sc06g0002410 Simmondsia chinensis HOM05D003771 ORTHO05D004396 4.6e-158 562.0 469 67.4
TAR383G0820 Trochodendron aralioides HOM05D003771 ORTHO05D004396 3.9e-157 558.9 485 66.0
Ah.04g162600 Amaranthus hybridus HOM05D003771 ORTHO05D004396 5.1e-157 558.5 477 65.0
PSO063G0153 Papaver somniferum HOM05D003771 ORTHO05D004396 6.6e-157 558.1 468 67.7
Lju50C19G3 Lonicera japonica HOM05D003771 ORTHO05D004396 1.1e-156 557.4 465 67.3
PSO782G3876 Papaver somniferum HOM05D003771 ORTHO05D004396 1.5e-156 557.0 468 67.7
BolC3t14282H Brassica oleracea HOM05D003771 ORTHO05D004396 1.9e-156 556.6 477 65.8
Glyma.08G026700 Glycine max HOM05D003771 ORTHO05D004396 2.5e-156 556.2 455 68.4
Hund03218 Selenicereus undatus HOM05D003771 ORTHO05D004396 5.6e-156 555.1 476 66.0
SGA_v2.0_scaffold21G09599 Striga asiatica HOM05D003771 ORTHO05D004396 1.6e-155 553.5 467 67.2
Rhsim01G0106700 Rhododendron simsii HOM05D003771 ORTHO05D004396 3.6e-155 552.4 525 62.3
Lj5A798G49 Lonicera japonica HOM05D003771 ORTHO05D004396 4.7e-155 552.0 484 65.1
SalBow5G2520 Salvia bowleyana HOM05D003771 ORTHO05D004396 3.1e-154 549.3 484 64.7
Aqoxy3G04250 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 2.0e-153 546.6 470 66.0
arahy.Tifrunner.gnm1.ann1.XKPK2Z Arachis hypogaea HOM05D003771 ORTHO05D004396 7.6e-153 544.7 465 66.7
Prupe.7G042600 Prunus persica HOM05D003771 ORTHO05D004396 2.9e-152 542.7 448 69.9
Cpa.g.sc91.64 Carica papaya HOM05D003771 ORTHO05D004396 2.1e-150 536.6 462 67.3
arahy.Tifrunner.gnm1.ann1.TH49EC Arachis hypogaea HOM05D003771 ORTHO05D004396 1.7e-149 533.5 482 64.1
Lsat_1_v5_gn_1_6680 Lactuca sativa HOM05D003771 ORTHO05D004396 2.3e-149 533.1 456 66.9
ECA233G1083 Erigeron canadensis HOM05D003771 ORTHO05D004396 9.6e-148 527.7 455 66.2
AUR62034148 Chenopodium quinoa HOM05D003771 ORTHO05D004396 1.6e-147 526.9 476 63.0
HanXRQChr02g0040541 Helianthus annuus HOM05D003771 ORTHO05D004396 1.6e-147 526.9 455 65.5
AUR62014286 Chenopodium quinoa HOM05D003771 ORTHO05D004396 3.1e-146 522.7 483 62.1
CDE07G1201 Ceratophyllum demersum HOM05D003771 ORTHO05D004396 6.4e-144 515.0 471 62.2
Os03g0265700 Oryza sativa ssp. japonica HOM05D003771 ORTHO05D004396 6.4e-144 515.0 459 62.7
ATR0626G390 Amborella trichopoda HOM05D003771 ORTHO05D004396 8.4e-144 514.6 483 61.3
Zm00001eb011800 Zea mays HOM05D003771 ORTHO05D004396 2.9e-136 489.6 460 61.7
A10p09550 Brassica napus HOM05D003771 ORTHO05D004396 1.4e-135 487.3 456 62.1
SEGI_40037 Sequoiadendron giganteum HOM05D003771 ORTHO05D004396 1.6e-131 473.8 479 57.8
CSS0043776 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 2.0e-129 466.8 567 51.9
HanXRQChr05g0138991 Helianthus annuus HOM05D003771 ORTHO05D004396 1.3e-123 447.6 455 58.0
HPP92_018040 Vanilla planifolia HOM05D003771 ORTHO05D004396 2.5e-116 423.3 349 66.2
MBI14_g32940_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D004396 3.4e-113 412.9 362 64.1
Mapoly0015s0202 Marchantia polymorpha HOM05D003771 ORTHO05D004396 5.0e-112 409.1 477 52.2
Pp3c15_18470 Physcomitrium patens HOM05D003771 ORTHO05D004396 7.2e-111 405.2 476 51.9
Peaxi162Scf00322g01517 Petunia axillaris HOM05D003771 ORTHO05D004396 1.2e-110 404.4 304 72.7
EL10Ac4g08749 Beta vulgaris HOM05D003771 ORTHO05D004396 2.7e-110 403.3 317 69.4
SMO367G0435 Selaginella moellendorffii HOM05D003771 ORTHO05D004396 6.3e-107 392.1 490 49.2
AagrBONN_evm.TU.Sc2ySwM_228.3008 Anthoceros agrestis HOM05D003771 ORTHO05D004396 4.5e-105 386.0 473 48.0
Hund19352 Selenicereus undatus HOM05D003771 ORTHO05D004396 4.2e-103 379.4 319 67.7
Aqoxy3G02692 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 7.9e-94 348.6 385 56.4
BraA10t43030Z Brassica rapa HOM05D003771 ORTHO05D004396 1.5e-92 344.4 289 66.4
BolC9t56986H Brassica oleracea HOM05D003771 ORTHO05D004396 1.4e-90 337.8 305 63.0
unitig_899.g15421 Utricularia gibba HOM05D003771 ORTHO05D004396 6.3e-75 285.8 239 65.3
C09p41060 Brassica napus HOM05D003771 ORTHO05D004396 8.3e-75 285.4 239 66.5
AagrBONN_evm.TU.Sc2ySwM_369.331 Anthoceros agrestis HOM05D003771 ORTHO05D004396 5.7e-60 236.1 318 45.9
vmacro20747 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 7.5e-60 235.7 318 49.1
C09p41070 Brassica napus HOM05D003771 ORTHO05D004396 9.8e-60 235.3 172 73.8
vmacro20748 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 1.3e-56 224.9 177 69.5
Lsat_1_v5_gn_8_69981 Lactuca sativa HOM05D003771 ORTHO05D004396 4.1e-50 203.4 242 51.7
AagrBONN_evm.TU.Sc2ySwM_228.2997 Anthoceros agrestis HOM05D003771 ORTHO05D004396 2.1e-38 164.5 174 52.9
Psat6g005640 Pisum sativum HOM05D003771 ORTHO05D004396 6.8e-37 159.5 137 63.5
unitig_899.g15422 Utricularia gibba HOM05D003771 ORTHO05D004396 4.7e-30 136.7 111 68.5
AagrBONN_evm.TU.Sc2ySwM_228.2996 Anthoceros agrestis HOM05D003771 ORTHO05D004396 5.6e-23 113.2 135 49.6
AagrBONN_evm.TU.Sc2ySwM_369.330 Anthoceros agrestis HOM05D003771 ORTHO05D004396 5.6e-23 113.2 135 49.6
HPP92_018039 Vanilla planifolia HOM05D003771 ORTHO05D004396 2.4e-21 107.8 174 43.7
VMungo0331G1237 Vigna mungo HOM05D003771 ORTHO05D004396 3.1e-21 107.5 67 79.1
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 2.2e-19 101.3 76 69.7
Nitab4.5_0006114g0020 Nicotiana tabacum HOM05D003771 ORTHO05D004396 8.4e-19 99.4 60 81.7
CBR_g10827 Chara braunii HOM05D003771 ORTHO05D004396 7.1e-18 96.3 208 36.5
VMungo1209G0002 Vigna mungo HOM05D003771 ORTHO05D004396 1.2e-17 95.5 79 67.1
CBR_g10825 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-16 92.4 74 59.5
vmacro20746 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 1.3e-16 92.0 56 78.6
MBI05_g48085_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D004396 4.3e-15 87.0 65 66.2
Oeu036958.1 Olea europaea HOM05D003771 ORTHO05D004396 7.4e-15 86.3 59 71.2
Aqoxy3G02691 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 3.7e-14 84.0 49 81.6
VMungo0331G1533 Vigna mungo HOM05D003771 ORTHO05D004396 4.5e-12 77.0 70 60.0
MBI14_g31102_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D012924 3.8e-11 73.9 55 65.5
Lsat_1_v5_gn_7_78841 Lactuca sativa HOM05D003771 ORTHO05D004396 4.6e-09 67.0 167 34.7
Lsat_1_v5_gn_4_142760 Lactuca sativa HOM05D003771 ORTHO05D012343 2.5e-07 61.2 75 53.3
MBI05_g23486_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 4.3e-07 60.5 43 74.4


User provided reference genes

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