Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1055300 Malus domestica HOM05D003771 ORTHO05D004396 1.0e-108 396.7 197 100.0
MD15G1427900 Malus domestica HOM05D003771 ORTHO05D004396 1.6e-58 229.9 233 58.4
RcHm_v2.0_Chr4g0384941 Rosa chinensis HOM05D003771 ORTHO05D004396 1.1e-54 217.2 233 57.1
Prupe.7G042600 Prunus persica HOM05D003771 ORTHO05D004396 4.2e-54 215.3 233 55.8
Potri.018G149400 Populus trichocarpa HOM05D003771 ORTHO05D004396 1.2e-53 213.8 233 54.5
FvH4_4g00210 Fragaria vesca HOM05D003771 ORTHO05D004396 2.1e-53 213.0 235 55.3
MD04G1002300 Malus domestica HOM05D003771 ORTHO05D004396 2.1e-53 213.0 233 55.8
CANSAT64G2070 Cannabis sativa HOM05D003771 ORTHO05D004396 2.7e-53 212.6 233 54.5
Sabra18G0126200 Salix brachista HOM05D003771 ORTHO05D004396 4.6e-53 211.8 233 54.1
Ciclev10007279m.g Citrus clementina HOM05D003771 ORTHO05D004396 6.0e-53 211.5 233 54.9
FAN22G1465 Fragaria x ananassa HOM05D003771 ORTHO05D004396 7.9e-53 211.1 233 55.8
Manes.02G223900 Manihot esculenta HOM05D003771 ORTHO05D004396 1.3e-52 210.3 233 54.9
QL11p007303 Quercus lobata HOM05D003771 ORTHO05D004396 1.3e-52 210.3 233 53.6
Cc06_g23760 Coffea canephora HOM05D003771 ORTHO05D004396 1.8e-52 209.9 236 54.2
Dinv12623 Davidia involucrata HOM05D003771 ORTHO05D004396 2.3e-52 209.5 235 54.0
VMungo0251G3699 Vigna mungo HOM05D003771 ORTHO05D004396 6.7e-52 208.0 236 52.1
CsaV3_4G031470 Cucumis sativus L. HOM05D003771 ORTHO05D004396 8.7e-52 207.6 233 52.8
FAN17G2138 Fragaria x ananassa HOM05D003771 ORTHO05D004396 1.1e-51 207.2 233 55.4
Glyma.08G026700 Glycine max HOM05D003771 ORTHO05D004396 1.1e-51 207.2 233 52.4
GSVIVG01022289001 Vitis vinifera HOM05D003771 ORTHO05D004396 1.1e-51 207.2 233 52.8
MELO3C009070.2 Cucumis melo HOM05D003771 ORTHO05D004396 1.5e-51 206.8 233 52.8
Eucgr.E04317 Eucalyptus grandis HOM05D003771 ORTHO05D004396 1.9e-51 206.5 233 52.4
Cpa.g.sc91.64 Carica papaya HOM05D003771 ORTHO05D004396 3.3e-51 205.7 233 52.8
ClCG04G000570 Citrullus lanatus HOM05D003771 ORTHO05D004396 3.3e-51 205.7 233 51.9
CiPaw.15G162500 Carya illinoinensis HOM05D003771 ORTHO05D004396 4.3e-51 205.3 233 52.4
Glyma.05G220300 Glycine max HOM05D003771 ORTHO05D004396 4.3e-51 205.3 233 52.4
Phvul.002G302000 Phaseolus vulgaris HOM05D003771 ORTHO05D004396 4.3e-51 205.3 233 52.4
Psat7g020760 Pisum sativum HOM05D003771 ORTHO05D004396 9.6e-51 204.1 235 52.8
arahy.Tifrunner.gnm1.ann1.TH49EC Arachis hypogaea HOM05D003771 ORTHO05D004396 2.8e-50 202.6 234 53.4
arahy.Tifrunner.gnm1.ann1.XKPK2Z Arachis hypogaea HOM05D003771 ORTHO05D004396 2.8e-50 202.6 234 53.4
Ca_17443_v3 Cicer arietinum L. HOM05D003771 ORTHO05D004396 2.8e-50 202.6 234 53.4
Atru.chr12.1314 Acer truncatum HOM05D003771 ORTHO05D004396 3.7e-50 202.2 233 51.5
PGR044G2258 Punica granatum HOM05D003771 ORTHO05D004396 3.7e-50 202.2 235 54.0
Aqoxy3G04250 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 4.8e-50 201.8 236 53.4
Lj4g0002190 Lotus japonicus HOM05D003771 ORTHO05D004396 8.1e-50 201.1 233 51.9
Lalb_Chr05g0223831 Lupinus albus HOM05D003771 ORTHO05D004396 8.1e-50 201.1 233 51.9
Nn1g00173 Nelumbo nucifera HOM05D003771 ORTHO05D004396 8.1e-50 201.1 227 53.3
TWI34G0561 Tripterygium wilfordii HOM05D003771 ORTHO05D004396 8.1e-50 201.1 234 52.1
CSS0004980 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 1.1e-49 200.7 236 53.4
CSS0043776 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 1.1e-49 200.7 236 53.4
TAR383G0820 Trochodendron aralioides HOM05D003771 ORTHO05D004396 1.1e-49 200.7 233 51.9
PSO063G0153 Papaver somniferum HOM05D003771 ORTHO05D004396 1.4e-49 200.3 234 52.1
Actinidia02465 Actinidia chinensis HOM05D003771 ORTHO05D004396 3.1e-49 199.1 238 52.1
Sed0018603 Sechium edule HOM05D003771 ORTHO05D004396 3.1e-49 199.1 234 52.1
Sc06g0002410 Simmondsia chinensis HOM05D003771 ORTHO05D004396 3.1e-49 199.1 233 51.5
Gohir.D05G000400 Gossypium hirsutum HOM05D003771 ORTHO05D004396 5.3e-49 198.4 224 53.6
Gorai.009G000200 Gossypium raimondii HOM05D003771 ORTHO05D004396 5.3e-49 198.4 224 53.6
Aqoxy3G02691 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 6.9e-49 198.0 236 52.5
vmacro20748 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 9.0e-49 197.6 238 52.1
DCAR_020453 Daucus carota HOM05D003771 ORTHO05D004396 1.2e-48 197.2 234 52.6
PSO782G3876 Papaver somniferum HOM05D003771 ORTHO05D004396 1.2e-48 197.2 234 51.7
Gohir.A05G000200 Gossypium hirsutum HOM05D003771 ORTHO05D004396 1.5e-48 196.8 224 53.1
Rhsim01G0106700 Rhododendron simsii HOM05D003771 ORTHO05D004396 2.0e-48 196.4 238 51.7
Thecc.09G205400 Theobroma cacao HOM05D003771 ORTHO05D004396 3.4e-48 195.7 224 54.0
Duzib168G1435 Durio zibethinus HOM05D003771 ORTHO05D004396 5.8e-48 194.9 224 53.6
Lj5A798G49 Lonicera japonica HOM05D003771 ORTHO05D004396 7.6e-48 194.5 234 51.7
Medtr8g100105 Medicago truncatula HOM05D003771 ORTHO05D004396 1.0e-47 194.1 227 53.3
THA.LOC104808936 Tarenaya hassleriana HOM05D003771 ORTHO05D004396 3.8e-47 192.2 236 52.5
Hund03218 Selenicereus undatus HOM05D003771 ORTHO05D004396 8.4e-47 191.0 236 49.6
Nn3g19428 Nelumbo nucifera HOM05D003771 ORTHO05D004396 1.4e-46 190.3 229 51.5
Peaxi162Scf00322g01517 Petunia axillaris HOM05D003771 ORTHO05D004396 1.4e-46 190.3 228 51.8
COL.COLO4_37655 Corchorus olitorius HOM05D003771 ORTHO05D004396 2.5e-46 189.5 225 53.8
Oeu008632.1 Olea europaea HOM05D003771 ORTHO05D004396 5.5e-46 188.3 248 48.4
Nitab4.5_0000019g0010 Nicotiana tabacum HOM05D003771 ORTHO05D004396 9.3e-46 187.6 230 50.4
Nitab4.5_0006114g0010 Nicotiana tabacum HOM05D003771 ORTHO05D004396 9.3e-46 187.6 230 50.4
Thhalv10012482m.g Eutrema salsugineum HOM05D003771 ORTHO05D004396 1.2e-45 187.2 237 50.2
EL10Ac4g08749 Beta vulgaris HOM05D003771 ORTHO05D004396 1.6e-45 186.8 239 48.1
Ah.04g162600 Amaranthus hybridus HOM05D003771 ORTHO05D004396 2.1e-45 186.4 239 48.1
Aa31sc328G10 Aethionema arabicum HOM05D003771 ORTHO05D004396 2.7e-45 186.0 237 49.8
Migut.L01925 Erythranthe guttata HOM05D003771 ORTHO05D004396 2.7e-45 186.0 241 49.4
Sopen05g020060 Solanum pennellii HOM05D003771 ORTHO05D004396 3.5e-45 185.7 228 50.0
AL3G44140 Arabidopsis lyrata HOM05D003771 ORTHO05D004396 6.0e-45 184.9 237 49.4
Haze_19080 Corylus avellana HOM05D003771 ORTHO05D004396 7.9e-45 184.5 299 41.8
A03p16060 Brassica napus HOM05D003771 ORTHO05D004396 2.3e-44 183.0 244 47.5
BraA03t10897Z Brassica rapa HOM05D003771 ORTHO05D004396 2.3e-44 183.0 244 47.5
CAN.G587.52 Capsicum annuum HOM05D003771 ORTHO05D004396 2.3e-44 183.0 228 49.6
HPP92_018040 Vanilla planifolia HOM05D003771 ORTHO05D004396 2.3e-44 183.0 224 50.0
Carub.0013s0005 Capsella rubella HOM05D003771 ORTHO05D004396 3.0e-44 182.6 237 49.8
SalBow5G2520 Salvia bowleyana HOM05D003771 ORTHO05D004396 3.0e-44 182.6 241 48.1
AT2G07360 Arabidopsis thaliana HOM05D003771 ORTHO05D004396 5.1e-44 181.8 237 48.5
BcaC01g06134 Brassica carinata HOM05D003771 ORTHO05D004396 5.1e-44 181.8 244 47.5
C03p18900 Brassica napus HOM05D003771 ORTHO05D004396 5.1e-44 181.8 244 47.5
BolC3t14282H Brassica oleracea HOM05D003771 ORTHO05D004396 5.1e-44 181.8 244 47.5
SGA_v2.0_scaffold21G09599 Striga asiatica HOM05D003771 ORTHO05D004396 6.7e-44 181.4 241 48.5
BcaB08g35516 Brassica carinata HOM05D003771 ORTHO05D004396 8.7e-44 181.0 237 48.9
BcaC04g20648 Brassica carinata HOM05D003771 ORTHO05D004396 8.7e-44 181.0 237 48.9
A10p09550 Brassica napus HOM05D003771 ORTHO05D004396 8.7e-44 181.0 237 48.9
Sp6g13880 Schrenkiella parvula HOM05D003771 ORTHO05D004396 8.7e-44 181.0 237 48.1
CARHR104050 Cardamine hirsuta HOM05D003771 ORTHO05D004396 1.1e-43 180.6 237 48.5
BcaB01g04159 Brassica carinata HOM05D003771 ORTHO05D004396 1.5e-43 180.3 237 48.1
C09p41070 Brassica napus HOM05D003771 ORTHO05D004396 1.9e-43 179.9 237 48.5
HanXRQChr02g0040541 Helianthus annuus HOM05D003771 ORTHO05D004396 3.3e-43 179.1 228 49.1
ECA233G1083 Erigeron canadensis HOM05D003771 ORTHO05D004396 1.6e-42 176.8 228 49.1
MSTRG.26513 Avicennia marina HOM05D003771 ORTHO05D004396 4.8e-42 175.3 241 47.3
Hund19352 Selenicereus undatus HOM05D003771 ORTHO05D004396 1.4e-41 173.7 238 46.6
Lsat_1_v5_gn_1_6680 Lactuca sativa HOM05D003771 ORTHO05D004396 1.2e-40 170.6 235 47.2
ATR0626G390 Amborella trichopoda HOM05D003771 ORTHO05D004396 1.5e-40 170.2 235 47.7
Lju50C19G3 Lonicera japonica HOM05D003771 ORTHO05D004396 5.8e-40 168.3 231 48.1
HanXRQChr05g0138111 Helianthus annuus HOM05D003771 ORTHO05D004396 2.2e-39 166.4 223 44.8
AUR62034148 Chenopodium quinoa HOM05D003771 ORTHO05D004396 1.1e-38 164.1 190 53.7
Os03g0265700 Oryza sativa ssp. japonica HOM05D003771 ORTHO05D004396 4.2e-38 162.2 229 45.9
AUR62014286 Chenopodium quinoa HOM05D003771 ORTHO05D004396 9.3e-38 161.0 295 39.0
Zm00001eb011800 Zea mays HOM05D003771 ORTHO05D004396 2.1e-37 159.8 229 45.9
Lsat_1_v5_gn_8_69981 Lactuca sativa HOM05D003771 ORTHO05D004396 1.8e-36 156.8 233 45.9
FAN12G3555 Fragaria x ananassa HOM05D003771 ORTHO05D004396 2.5e-35 152.9 110 70.0
SEGI_40037 Sequoiadendron giganteum HOM05D003771 ORTHO05D004396 4.3e-35 152.1 233 44.2
unitig_899.g15422 Utricularia gibba HOM05D003771 ORTHO05D004396 1.1e-33 147.5 229 45.0
SMO367G0435 Selaginella moellendorffii HOM05D003771 ORTHO05D004396 3.2e-30 136.0 245 40.8
AagrBONN_evm.TU.Sc2ySwM_228.3008 Anthoceros agrestis HOM05D003771 ORTHO05D004396 1.6e-29 133.7 198 42.4
Pp3c15_18470 Physcomitrium patens HOM05D003771 ORTHO05D004396 3.9e-28 129.0 197 43.7
Mapoly0015s0202 Marchantia polymorpha HOM05D003771 ORTHO05D004396 1.5e-27 127.1 197 42.1
TPR.G25458 Trifolium pratense HOM05D003771 ORTHO05D004396 1.5e-27 127.1 180 46.7
RcHm_v2.0_Chr4g0384831 Rosa chinensis HOM05D003771 ORTHO05D004396 1.2e-24 117.5 70 81.4
TPR.G14800 Trifolium pratense HOM05D003771 ORTHO05D004396 1.1e-22 110.9 71 78.9
RcHm_v2.0_Chr4g0384821 Rosa chinensis HOM05D003771 ORTHO05D004396 4.8e-18 95.5 53 90.6
CDE07G1201 Ceratophyllum demersum HOM05D003771 ORTHO05D004396 1.5e-16 90.5 53 84.9
Zm00001eb307240 Zea mays HOM05D003771 ORTHO05D004396 5.9e-16 88.6 53 83.0
Zm00001eb154330 Zea mays HOM05D003771 ORTHO05D004396 2.2e-15 86.7 52 82.7
AagrBONN_evm.TU.Sc2ySwM_228.2998 Anthoceros agrestis HOM05D003771 ORTHO05D004396 9.4e-14 81.3 77 57.1
AagrBONN_evm.TU.Sc2ySwM_369.331 Anthoceros agrestis HOM05D003771 ORTHO05D004396 9.4e-14 81.3 77 57.1
Lsat_1_v5_gn_5_155680 Lactuca sativa HOM05D003771 ORTHO05D004396 1.8e-12 77.0 152 40.8
Psat0ss6263g0280 Pisum sativum HOM05D041104 ORTHO05D004396 6.7e-12 75.1 46 82.6
Psat3g071280 Pisum sativum HOM05D000062 ORTHO05D004396 1.1e-11 74.3 48 79.2
PSO782G3302 Papaver somniferum HOM05D003771 ORTHO05D004396 7.4e-11 71.6 67 58.2
FAN12G2055 Fragaria x ananassa HOM05D003771 ORTHO05D004396 6.3e-10 68.6 36 91.7
COL.COLO4_38524 Corchorus olitorius HOM05D003771 ORTHO05D004396 8.2e-10 68.2 36 88.9
Psat5g077000 Pisum sativum HOM05D000062 ORTHO05D004396 1.8e-09 67.0 48 70.8
CBR_g10825 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-09 66.6 230 27.4
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 3.1e-09 66.2 71 50.7
Psat2g096160 Pisum sativum HOM05D000041 ORTHO05D000061 4.2e-06 55.8 40 72.5
Psat2g096240 Pisum sativum HOM05D000041 ORTHO05D000061 4.2e-06 55.8 40 72.5


User provided reference genes

Program Settings