Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1043600 Malus domestica HOM05D005878 ORTHO05D007433 1.1e-111 406.8 219 100.0
MD00G1152600 Malus domestica HOM05D005878 ORTHO05D007433 4.1e-103 378.3 220 92.7
Prupe.2G044200 Prunus persica HOM05D005878 ORTHO05D007433 1.9e-92 342.8 225 86.2
RcHm_v2.0_Chr1g0327631 Rosa chinensis HOM05D005878 ORTHO05D007433 1.5e-81 306.6 229 77.3
FAN01G0732 Fragaria x ananassa HOM05D005878 ORTHO05D007433 1.0e-77 293.9 230 71.7
FAN06G2676 Fragaria x ananassa HOM05D005878 ORTHO05D007433 1.3e-77 293.5 230 71.7
FvH4_7g03940 Fragaria vesca HOM05D005878 ORTHO05D007433 2.5e-76 289.3 230 71.3
Cfa010961 Carpinus fangiana HOM05D005878 ORTHO05D007433 7.9e-70 267.7 230 68.7
arahy.Tifrunner.gnm1.ann1.7Y8XE1 Arachis hypogaea HOM05D005878 ORTHO05D007433 1.6e-67 260.0 221 70.1
CiPaw.14G010200 Carya illinoinensis HOM05D005878 ORTHO05D007433 2.8e-67 259.2 222 68.5
CANSAT01G2833 Cannabis sativa HOM05D005878 ORTHO05D007433 1.1e-66 257.3 236 67.8
QL04p021553 Quercus lobata HOM05D005878 ORTHO05D007433 3.1e-66 255.8 234 66.2
arahy.Tifrunner.gnm1.ann1.RJ91AH Arachis hypogaea HOM05D005878 ORTHO05D007433 4.0e-66 255.4 221 69.7
TAR633G2731 Trochodendron aralioides HOM05D005878 ORTHO05D007433 2.6e-65 252.7 236 66.1
Lalb_Chr01g0007451 Lupinus albus HOM05D005878 ORTHO05D007433 3.4e-65 252.3 230 66.5
Sc14g0005230 Simmondsia chinensis HOM05D005878 ORTHO05D007433 3.4e-65 252.3 228 63.6
Gorai.012G019700 Gossypium raimondii HOM05D005878 ORTHO05D007433 6.5e-64 248.1 235 64.7
Haze_02979 Corylus avellana HOM05D005878 ORTHO05D007433 8.4e-64 247.7 248 61.7
Gohir.A05G398900 Gossypium hirsutum HOM05D005878 ORTHO05D007433 8.4e-64 247.7 235 64.3
Nn7g36933 Nelumbo nucifera HOM05D005878 ORTHO05D007433 1.1e-63 247.3 234 65.0
Dinv02557 Davidia involucrata HOM05D005878 ORTHO05D007433 1.9e-63 246.5 219 66.7
Gohir.D04G017000 Gossypium hirsutum HOM05D005878 ORTHO05D007433 1.9e-63 246.5 235 64.3
Phvul.005G018300 Phaseolus vulgaris HOM05D005878 ORTHO05D007433 3.2e-63 245.7 225 65.3
COL.COLO4_05616 Corchorus olitorius HOM05D005878 ORTHO05D007433 1.2e-62 243.8 233 62.2
TAR636G2836 Trochodendron aralioides HOM05D005878 ORTHO05D007433 6.0e-62 241.5 227 63.9
Duzib114G0830 Durio zibethinus HOM05D005878 ORTHO05D007433 7.9e-62 241.1 222 64.4
Manes.11G008200 Manihot esculenta HOM05D005878 ORTHO05D007433 1.0e-61 240.7 206 69.4
Glyma.04G132400 Glycine max HOM05D005878 ORTHO05D007433 1.8e-61 240.0 221 66.1
Glyma.06G309000 Glycine max HOM05D005878 ORTHO05D007433 1.8e-61 240.0 209 68.9
MELO3C012494.2 Cucumis melo HOM05D005878 ORTHO05D007433 8.7e-61 237.7 209 65.1
Thhalv10014567m.g Eutrema salsugineum HOM05D005878 ORTHO05D007433 1.1e-60 237.3 165 75.8
CsaV3_5G036960 Cucumis sativus L. HOM05D005878 ORTHO05D007433 2.5e-60 236.1 239 58.2
Medtr3g013460 Medicago truncatula HOM05D005878 ORTHO05D007433 2.5e-60 236.1 219 65.8
ClCG05G027000 Citrullus lanatus HOM05D005878 ORTHO05D007433 4.3e-60 235.3 242 59.1
Migut.B01182 Erythranthe guttata HOM05D005878 ORTHO05D007433 4.3e-60 235.3 187 66.8
FAN03G0529 Fragaria x ananassa HOM05D005878 ORTHO05D007433 4.3e-60 235.3 328 48.5
Eucgr.G03205 Eucalyptus grandis HOM05D005878 ORTHO05D007433 5.7e-60 235.0 224 63.4
Aqoxy2G00498 Aquilegia oxysepala HOM05D005878 ORTHO05D007433 7.4e-60 234.6 228 63.6
Actinidia01690 Actinidia chinensis HOM05D005878 ORTHO05D007433 9.6e-60 234.2 231 61.9
Lj3g0011478 Lotus japonicus HOM05D005878 ORTHO05D007433 9.6e-60 234.2 220 63.6
Nitab4.5_0002838g0030 Nicotiana tabacum HOM05D005878 ORTHO05D007433 9.6e-60 234.2 245 58.4
AL6G17170 Arabidopsis lyrata HOM05D005878 ORTHO05D007433 1.3e-59 233.8 156 77.6
Nitab4.5_0004168g0090 Nicotiana tabacum HOM05D005878 ORTHO05D007433 1.3e-59 233.8 242 58.3
MBI03_g46805_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 1.6e-59 233.4 230 61.7
THA.LOC104799332 Tarenaya hassleriana HOM05D005878 ORTHO05D007433 1.6e-59 233.4 221 61.5
PGSC0003DMG400003288 Solanum tuberosum HOM05D005878 ORTHO05D007433 2.1e-59 233.0 235 60.0
BcaB05g21635 Brassica carinata HOM05D005878 ORTHO05D007433 2.8e-59 232.6 179 68.2
BcaC03g13174 Brassica carinata HOM05D005878 ORTHO05D007433 2.8e-59 232.6 179 68.2
BolC2t06258H Brassica oleracea HOM05D005878 ORTHO05D007433 2.8e-59 232.6 179 68.2
Solyc01g096660.3 Solanum lycopersicum HOM05D005878 ORTHO05D007433 2.8e-59 232.6 237 60.8
AT5G07020 Arabidopsis thaliana HOM05D005878 ORTHO05D007433 3.7e-59 232.3 156 78.2
C02p02970 Brassica napus HOM05D005878 ORTHO05D007433 3.7e-59 232.3 206 60.7
Ciclev10002378m.g Citrus clementina HOM05D005878 ORTHO05D007433 3.7e-59 232.3 232 61.6
Cc00_g09800 Coffea canephora HOM05D005878 ORTHO05D007433 3.7e-59 232.3 229 62.4
Dinv32002 Davidia involucrata HOM05D005878 ORTHO05D007433 3.7e-59 232.3 214 65.4
MBI03_g45113_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 3.7e-59 232.3 230 61.3
Thecc.10G140600 Theobroma cacao HOM05D005878 ORTHO05D007433 6.3e-59 231.5 226 59.7
TWI38G1150 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 8.2e-59 231.1 213 65.7
VMungo1080G0593 Vigna mungo HOM05D005878 ORTHO05D007433 8.2e-59 231.1 232 61.6
BcaB05g21633 Brassica carinata HOM05D005878 ORTHO05D007433 1.4e-58 230.3 217 59.9
PSO339G1146 Papaver somniferum HOM05D005878 ORTHO05D007433 1.4e-58 230.3 211 59.7
Sopen01g040380 Solanum pennellii HOM05D005878 ORTHO05D007433 1.4e-58 230.3 237 59.9
BcaC06g32524 Brassica carinata HOM05D005878 ORTHO05D007433 1.8e-58 229.9 182 65.9
Sp6g35860 Schrenkiella parvula HOM05D005878 ORTHO05D007433 1.8e-58 229.9 193 68.4
A10p28810 Brassica napus HOM05D005878 ORTHO05D007433 2.4e-58 229.6 192 65.1
CARHR206130 Cardamine hirsuta HOM05D005878 ORTHO05D007433 2.4e-58 229.6 164 73.2
BcaNung04204 Brassica carinata HOM05D005878 ORTHO05D007433 3.1e-58 229.2 202 63.4
C09p69150 Brassica napus HOM05D005878 ORTHO05D007433 3.1e-58 229.2 202 63.4
BraA10t44928Z Brassica rapa HOM05D005878 ORTHO05D007433 3.1e-58 229.2 192 65.1
BolC9t59659H Brassica oleracea HOM05D005878 ORTHO05D007433 4.1e-58 228.8 202 63.4
Ca_14245_v3 Cicer arietinum L. HOM05D005878 ORTHO05D007433 5.3e-58 228.4 199 65.8
TWI15G0528 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 5.3e-58 228.4 234 58.5
Carub.0006s0594 Capsella rubella HOM05D005878 ORTHO05D007433 6.9e-58 228.0 167 73.1
CSS0046372 Camellia sinensis var. sinensis HOM05D005878 ORTHO05D007433 9.0e-58 227.6 222 59.9
PGR031G0581 Punica granatum HOM05D005878 ORTHO05D007433 1.2e-57 227.3 225 60.4
MSTRG.16973 Avicennia marina HOM05D005878 ORTHO05D007433 1.5e-57 226.9 201 62.2
Hund13399 Selenicereus undatus HOM05D005878 ORTHO05D007433 1.5e-57 226.9 222 61.7
Actinidia01520 Actinidia chinensis HOM05D005878 ORTHO05D007433 4.5e-57 225.3 230 60.9
Peaxi162Scf00220g00235 Petunia axillaris HOM05D005878 ORTHO05D007433 4.5e-57 225.3 203 65.0
PSO384G4469 Papaver somniferum HOM05D005878 ORTHO05D007433 5.9e-57 224.9 211 58.8
Sed0004070 Sechium edule HOM05D005878 ORTHO05D007433 1.7e-56 223.4 224 57.6
Oeu006783.1 Olea europaea HOM05D005878 ORTHO05D007433 3.8e-56 222.2 211 61.1
DCAR_006594 Daucus carota HOM05D005878 ORTHO05D007433 5.0e-56 221.9 188 67.6
ECA248G2695 Erigeron canadensis HOM05D005878 ORTHO05D007433 6.5e-56 221.5 220 59.1
Rhsim10G0180100 Rhododendron simsii HOM05D005878 ORTHO05D007433 3.2e-55 219.2 177 71.8
SalBow2G0433 Salvia bowleyana HOM05D005878 ORTHO05D007433 3.2e-55 219.2 219 57.5
SalBow2G2419 Salvia bowleyana HOM05D005878 ORTHO05D007433 3.2e-55 219.2 219 57.5
Lsat_1_v5_gn_9_74980 Lactuca sativa HOM05D005878 ORTHO05D007433 5.5e-55 218.4 215 61.4
AUR62032609 Chenopodium quinoa HOM05D005878 ORTHO05D007433 6.1e-54 214.9 242 55.0
EL10Ac2g02748 Beta vulgaris HOM05D005878 ORTHO05D007433 5.1e-53 211.8 198 62.6
ATR1136G020 Amborella trichopoda HOM05D005878 ORTHO05D007433 8.7e-53 211.1 184 61.4
BraA02t04902Z Brassica rapa HOM05D005878 ORTHO05D007433 1.5e-52 210.3 218 57.8
HanXRQChr11g0341301 Helianthus annuus HOM05D005878 ORTHO05D007433 5.7e-52 208.4 206 59.2
HPP92_016121 Vanilla planifolia HOM05D005878 ORTHO05D007433 6.3e-51 204.9 224 52.7
vmacro20585 Vaccinium macrocarpon HOM05D005878 ORTHO05D007433 2.4e-50 203.0 224 57.6
GSVIVG01036595001 Vitis vinifera HOM05D005878 ORTHO05D007433 6.9e-50 201.4 193 58.5
unitig_22.g5332 Utricularia gibba HOM05D005878 ORTHO05D007433 5.9e-49 198.4 206 57.3
Potri.003G192800 Populus trichocarpa HOM05D005878 ORTHO05D007433 1.0e-48 197.6 212 58.0
CDE08G0208 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 3.8e-48 195.7 228 53.9
Aa31sc25G160 Aethionema arabicum HOM05D005878 ORTHO05D007433 1.1e-47 194.1 132 72.7
Os02g0556800 Oryza sativa ssp. japonica HOM05D005878 ORTHO05D007433 4.2e-47 192.2 158 63.3
Zm00001eb182020 Zea mays HOM05D005878 ORTHO05D007433 7.2e-47 191.4 157 66.2
Hma1.2p1_0233F.1_g098360 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 2.1e-46 189.9 127 74.8
CDE02G0435 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 4.6e-46 188.7 206 55.8
Cpa.g.sc188.4 Carica papaya HOM05D005878 ORTHO05D007433 5.1e-45 185.3 117 82.1
Atru.chr12.1246 Acer truncatum HOM05D005878 ORTHO05D007433 1.5e-44 183.7 216 56.0
AUR62001069 Chenopodium quinoa HOM05D005878 ORTHO05D007433 1.5e-44 183.7 182 61.0
SEGI_13955 Sequoiadendron giganteum HOM05D005878 ORTHO05D007433 7.4e-44 181.4 184 55.4
TPR.G1450 Trifolium pratense HOM05D005878 ORTHO05D007433 7.4e-44 181.4 137 69.3
SGA_v2.0_scaffold430G51553 Striga asiatica HOM05D005878 ORTHO05D007433 3.7e-43 179.1 159 60.4
AagrBONN_evm.TU.Sc2ySwM_117.450 Anthoceros agrestis HOM05D005878 ORTHO05D007433 1.4e-42 177.2 157 58.6
AagrBONN_evm.TU.Sc2ySwM_117.1283 Anthoceros agrestis HOM05D005878 ORTHO05D007433 2.0e-41 173.3 153 60.1
Lj9A656G41 Lonicera japonica HOM05D005878 ORTHO05D007433 5.9e-41 171.8 150 66.7
Mapoly0116s0014 Marchantia polymorpha HOM05D005878 ORTHO05D007433 2.9e-40 169.5 167 56.9
Psat5g223120 Pisum sativum HOM05D005878 ORTHO05D007433 1.6e-38 163.7 219 51.1
Hma1.2p1_0233F.1_g098370 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 7.9e-38 161.4 160 60.6
Pp3c8_5370 Physcomitrium patens HOM05D005878 ORTHO05D007433 1.0e-37 161.0 174 51.7
A03p56860 Brassica napus HOM05D005878 ORTHO05D007433 1.4e-37 160.6 132 68.9
Pp3c3_32790 Physcomitrium patens HOM05D005878 ORTHO05D007433 4.8e-35 152.1 172 49.4
SMO143G0125 Selaginella moellendorffii HOM05D005878 ORTHO05D007433 1.1e-34 151.0 201 48.8
Eucgr.L03611 Eucalyptus grandis HOM05D005878 ORTHO05D007433 3.7e-27 125.9 109 62.4
BcaC03g13176 Brassica carinata HOM05D005878 ORTHO05D007433 6.3e-27 125.2 103 60.2
TAR628G0990 Trochodendron aralioides HOM05D005878 ORTHO05D007433 1.0e-24 117.9 165 52.1
AUR62031722 Chenopodium quinoa HOM05D005878 ORTHO05D007433 1.9e-23 113.6 215 41.9
Atru.chr2.3038 Acer truncatum HOM05D005878 ORTHO05D007433 4.4e-20 102.4 97 60.8
CBR_g50344 Chara braunii HOM05D005878 ORTHO05D007433 2.7e-17 93.2 202 36.1
Atru.chr3.2623 Acer truncatum HOM05D005878 ORTHO05D007433 3.6e-14 82.8 83 56.6
Atru.chr7.1915 Acer truncatum HOM05D005878 ORTHO05D007433 3.6e-14 82.8 87 52.9
Potri.001G032200 Populus trichocarpa HOM05D005878 ORTHO05D007433 6.3e-11 72.0 223 33.2
BolC7t45992H Brassica oleracea HOM05D005878 ORTHO05D033170 4.3e-07 59.3 52 75.0
PGSC0003DMG400040390 Solanum tuberosum HOM05D005878 ORTHO05D007433 2.1e-06 57.0 63 55.6
C07p55210 Brassica napus HOM05D005878 ORTHO05D033170 8.0e-06 55.1 108 44.4


User provided reference genes

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