Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1036500 Malus domestica HOM05D003133 ORTHO05D003642 1.8e-26 121.7 57 100.0
CAN.G774.27 Capsicum annuum HOM05D003133 ORTHO05D003642 1.9e-07 58.5 32 71.9
Prupe.5G099600 Prunus persica HOM05D003133 ORTHO05D003642 3.2e-07 57.8 30 83.3
Carub.0007s1815 Capsella rubella HOM05D003133 ORTHO05D003642 4.2e-07 57.4 30 76.7
HanXRQChr17g0533681 Helianthus annuus HOM05D003133 ORTHO05D003642 4.2e-07 57.4 30 76.7
Lsat_1_v5_gn_1_34361 Lactuca sativa HOM05D003133 ORTHO05D003642 4.2e-07 57.4 30 76.7
MD04G1242000 Malus domestica HOM05D006824 ORTHO05D008779 4.2e-07 57.4 27 96.3
Sed0025899 Sechium edule HOM05D003133 ORTHO05D003642 4.2e-07 57.4 30 83.3
THA.LOC104806388 Tarenaya hassleriana HOM05D003133 ORTHO05D003642 4.2e-07 57.4 30 76.7
vmacro11331 Vaccinium macrocarpon HOM05D003133 ORTHO05D003642 4.2e-07 57.4 50 52.0
ClCG01G002740 Citrullus lanatus HOM05D003133 ORTHO05D003642 5.5e-07 57.0 30 80.0
MD09G1055300 Malus domestica HOM05D000165 ORTHO05D005214 5.5e-07 57.0 26 100.0
MD10G1335300 Malus domestica HOM05D000193 ORTHO05D000776 5.5e-07 57.0 26 100.0
Ah.12g056970 Amaranthus hybridus HOM05D003133 ORTHO05D003642 7.2e-07 56.6 30 73.3
EL10Ac5g13059 Beta vulgaris HOM05D003133 ORTHO05D003642 7.2e-07 56.6 30 73.3
CARHR230180 Cardamine hirsuta HOM05D003133 ORTHO05D003642 7.2e-07 56.6 30 80.0
AUR62017210 Chenopodium quinoa HOM05D003133 ORTHO05D003642 7.2e-07 56.6 30 73.3
Cc08_g14690 Coffea canephora HOM05D003133 ORTHO05D003642 7.2e-07 56.6 30 76.7
COL.COLO4_34458 Corchorus olitorius HOM05D003133 ORTHO05D003642 7.2e-07 56.6 30 76.7
Duzib084G0978 Durio zibethinus HOM05D003133 ORTHO05D003642 7.2e-07 56.6 30 76.7
ECA246G1277 Erigeron canadensis HOM05D003133 ORTHO05D003642 7.2e-07 56.6 30 76.7
Migut.A00769 Erythranthe guttata HOM05D003133 ORTHO05D003642 7.2e-07 56.6 30 76.7
Gohir.A09G192401 Gossypium hirsutum HOM05D003133 ORTHO05D003642 7.2e-07 56.6 30 76.7
Oeu011047.1 Olea europaea HOM05D003133 ORTHO05D003642 7.2e-07 56.6 30 76.7
Peaxi162Scf00119g00083 Petunia axillaris HOM05D003133 ORTHO05D003642 7.2e-07 56.6 30 76.7
Potri.003G126900 Populus trichocarpa HOM05D003133 ORTHO05D003642 7.2e-07 56.6 30 76.7
Thecc.03G278200 Theobroma cacao HOM05D003133 ORTHO05D003642 7.2e-07 56.6 30 76.7
MD01G1053600 Malus domestica HOM05D004612 ORTHO05D004940 9.4e-07 56.2 26 96.2
PSO017G2538 Papaver somniferum HOM05D003133 ORTHO05D003642 9.4e-07 56.2 30 73.3
PSO063G0727 Papaver somniferum HOM05D003133 ORTHO05D003642 9.4e-07 56.2 30 73.3
Hund14791 Selenicereus undatus HOM05D003133 ORTHO05D003642 9.4e-07 56.2 30 73.3
Solyc08g081010.3 Solanum lycopersicum HOM05D003133 ORTHO05D003642 9.4e-07 56.2 30 73.3
Sopen08g029330 Solanum pennellii HOM05D003133 ORTHO05D003642 9.4e-07 56.2 30 73.3
PGSC0003DMG400012210 Solanum tuberosum HOM05D003133 ORTHO05D003642 9.4e-07 56.2 30 73.3
THA.LOC104814473 Tarenaya hassleriana HOM05D003133 ORTHO05D003642 9.4e-07 56.2 30 73.3
AL7G30380 Arabidopsis lyrata HOM05D003133 ORTHO05D003642 1.2e-06 55.8 30 76.7
AT4G23100 Arabidopsis thaliana HOM05D003133 ORTHO05D003642 1.2e-06 55.8 30 76.7
CANSAT21G0409 Cannabis sativa HOM05D003133 ORTHO05D003642 1.2e-06 55.8 30 76.7
Rhsim02G0229900 Rhododendron simsii HOM05D003133 ORTHO05D003642 1.2e-06 55.8 30 73.3
Cpa.g.sc74.44 Carica papaya HOM05D003133 ORTHO05D003642 1.6e-06 55.5 30 76.7
MELO3C005674.2 Cucumis melo HOM05D003133 ORTHO05D003642 1.6e-06 55.5 30 76.7
Hma1.2p1_0792F.1_g218580 Hydrangea macrophylla HOM05D003133 ORTHO05D003642 1.6e-06 55.5 30 76.7
Hma1.2p1_2966F.1_g330980 Hydrangea macrophylla HOM05D003133 ORTHO05D003642 1.6e-06 55.5 30 76.7
Lj2A192G38 Lonicera japonica HOM05D003133 ORTHO05D003642 1.6e-06 55.5 30 73.3
Potri.001G104500 Populus trichocarpa HOM05D003133 ORTHO05D003642 1.6e-06 55.5 30 76.7
Sabra01G0079200 Salix brachista HOM05D003133 ORTHO05D003642 1.6e-06 55.5 30 76.7
SalBow7G4504 Salvia bowleyana HOM05D003133 ORTHO05D003642 1.6e-06 55.5 30 76.7
CSS0049388 Camellia sinensis var. sinensis HOM05D003133 ORTHO05D003642 2.1e-06 55.1 30 73.3
Haze_08845 Corylus avellana HOM05D003133 ORTHO05D003642 2.1e-06 55.1 30 76.7
Gohir.D09G186600 Gossypium hirsutum HOM05D003133 ORTHO05D003642 2.1e-06 55.1 30 76.7
Gorai.006G209400 Gossypium raimondii HOM05D003133 ORTHO05D003642 2.1e-06 55.1 30 76.7
Lj8A228T23 Lonicera japonica HOM05D003133 ORTHO05D003642 2.1e-06 55.1 30 73.3
Lj8A232T62 Lonicera japonica HOM05D003133 ORTHO05D003642 2.1e-06 55.1 30 73.3
MD06G1082500 Malus domestica HOM05D003133 ORTHO05D003642 2.1e-06 55.1 30 80.0
MD13G1190300 Malus domestica HOM05D000164 ORTHO05D000096 2.1e-06 55.1 25 96.0
MD14G1104000 Malus domestica HOM05D003133 ORTHO05D003642 2.1e-06 55.1 30 80.0
Nitab4.5_0003441g0130 Nicotiana tabacum HOM05D003133 ORTHO05D003642 2.1e-06 55.1 30 73.3
Nitab4.5_0010612g0020 Nicotiana tabacum HOM05D003133 ORTHO05D003642 2.1e-06 55.1 30 73.3
Sabra03G0090000 Salix brachista HOM05D003133 ORTHO05D003642 2.1e-06 55.1 30 73.3
MSTRG.13837 Avicennia marina HOM05D003133 ORTHO05D003642 2.7e-06 54.7 30 70.0
MBI18_g34593_MAGBIO Magnolia biondii HOM05D003133 ORTHO05D003642 2.7e-06 54.7 49 49.0
Nn6g33441 Nelumbo nucifera HOM05D003133 ORTHO05D003642 2.7e-06 54.7 30 76.7
Nn6g33461 Nelumbo nucifera HOM05D003133 ORTHO05D003642 2.7e-06 54.7 30 76.7
HPP92_015162 Vanilla planifolia HOM05D003133 ORTHO05D003642 2.7e-06 54.7 30 73.3
Eucgr.D01848 Eucalyptus grandis HOM05D003133 ORTHO05D003642 3.6e-06 54.3 30 73.3
Manes.02G022200 Manihot esculenta HOM05D003133 ORTHO05D003642 3.6e-06 54.3 30 76.7
DCAR_004633 Daucus carota HOM05D003133 ORTHO05D003642 4.7e-06 53.9 30 70.0
Prupe.5G099700 Prunus persica HOM05D003133 ORTHO05D003642 4.7e-06 53.9 30 76.7
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 4.7e-06 53.9 31 67.7
Hund11475 Selenicereus undatus HOM05D003133 ORTHO05D003642 4.7e-06 53.9 30 73.3
Sc22g0005610 Simmondsia chinensis HOM05D003133 ORTHO05D003642 4.7e-06 53.9 30 73.3
TAR629G0119 Trochodendron aralioides HOM05D003133 ORTHO05D003642 4.7e-06 53.9 30 76.7
Aqoxy7G00341 Aquilegia oxysepala HOM05D003133 ORTHO05D003642 6.1e-06 53.5 30 73.3
AL5G13020 Arabidopsis lyrata HOM05D003133 ORTHO05D003642 6.1e-06 53.5 30 76.7
AL7G30390 Arabidopsis lyrata HOM05D003133 ORTHO05D003642 6.1e-06 53.5 29 79.3
AUR62003405 Chenopodium quinoa HOM05D003133 ORTHO05D003642 6.1e-06 53.5 30 70.0
HanXRQChr06g0165551 Helianthus annuus HOM05D003133 ORTHO05D003642 6.1e-06 53.5 30 70.0
SalBow8G3631 Salvia bowleyana HOM05D003133 ORTHO05D003642 6.1e-06 53.5 30 70.0
TAR636G2402 Trochodendron aralioides HOM05D003133 ORTHO05D003642 6.1e-06 53.5 30 76.7
GSVIVG01019757001 Vitis vinifera HOM05D003133 ORTHO05D003642 6.1e-06 53.5 30 73.3
MD04G1153600 Malus domestica HOM05D002119 ORTHO05D002209 7.9e-06 53.1 27 92.6
MD15G1335100 Malus domestica HOM05D006162 ORTHO05D248432 7.9e-06 53.1 33 72.7
Sp7g21160 Schrenkiella parvula HOM05D003133 ORTHO05D003642 7.9e-06 53.1 30 73.3
TWI81G0564 Tripterygium wilfordii HOM05D003133 ORTHO05D003642 7.9e-06 53.1 32 68.8


User provided reference genes

Program Settings