Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1034000 Malus domestica HOM05D061087 ORTHO05D002420 1.2e-85 319.7 155 100.0
MD09G1179700 Malus domestica HOM05D061087 ORTHO05D248600 8.7e-47 190.7 103 85.4
MD07G1186500 Malus domestica HOM05D002317 ORTHO05D002420 2.1e-16 89.7 58 79.3
MD13G1157000 Malus domestica HOM05D002317 ORTHO05D002420 3.5e-16 89.0 63 76.2
Prupe.2G225300 Prunus persica HOM05D002317 ORTHO05D002420 4.3e-14 82.0 60 68.3
RcHm_v2.0_Chr1g0365121 Rosa chinensis HOM05D002317 ORTHO05D002420 2.2e-13 79.7 49 79.6
FAN03G3213 Fragaria x ananassa HOM05D002317 ORTHO05D002420 4.1e-12 75.5 49 77.6
FvH4_7g20871 Fragaria vesca HOM05D002317 ORTHO05D002420 5.3e-12 75.1 49 75.5
FAN06G4957 Fragaria x ananassa HOM05D002317 ORTHO05D002420 5.3e-12 75.1 49 75.5
FAN10G1751 Fragaria x ananassa HOM05D002317 ORTHO05D002420 5.3e-12 75.1 49 75.5
FAN06G0204 Fragaria x ananassa HOM05D002317 ORTHO05D002420 2.6e-11 72.8 49 73.5
Haze_16977 Corylus avellana HOM05D002317 ORTHO05D002420 6.1e-08 61.6 45 57.8
MELO3C023813.2 Cucumis melo HOM05D002317 ORTHO05D002420 6.1e-08 61.6 45 57.8
Atru.chr12.581 Acer truncatum HOM05D002317 ORTHO05D002420 1.0e-07 60.8 45 57.8
QL08p057705 Quercus lobata HOM05D002317 ORTHO05D002420 1.0e-07 60.8 45 55.6
ClCG02G013630 Citrullus lanatus HOM05D002317 ORTHO05D002420 1.4e-07 60.5 45 55.6
CSS0006098 Camellia sinensis var. sinensis HOM05D002317 ORTHO05D002420 1.8e-07 60.1 62 41.9
Ciclev10030880m.g Citrus clementina HOM05D002317 ORTHO05D002420 2.3e-07 59.7 45 57.8
CsaV3_5G006560 Cucumis sativus L. HOM05D002317 ORTHO05D002420 3.0e-07 59.3 45 55.6
Manes.07G107300 Manihot esculenta HOM05D002317 ORTHO05D002420 3.0e-07 59.3 45 55.6
Sed0019600 Sechium edule HOM05D002317 ORTHO05D002420 3.0e-07 59.3 52 51.9
EL10Ac2g03481 Beta vulgaris HOM05D002317 ORTHO05D002420 3.9e-07 58.9 55 45.5
CiPaw.02G178900 Carya illinoinensis HOM05D002317 ORTHO05D002420 3.9e-07 58.9 45 53.3
Sed0008808 Sechium edule HOM05D002317 ORTHO05D002420 3.9e-07 58.9 45 55.6
TWI38G1115 Tripterygium wilfordii HOM05D002317 ORTHO05D002420 3.9e-07 58.9 54 44.4
Oeu058317.1 Olea europaea HOM05D002317 ORTHO05D002420 6.7e-07 58.2 53 52.8
Thecc.10G060500 Theobroma cacao HOM05D002317 ORTHO05D002420 8.8e-07 57.8 60 48.3
CDE07G0510 Ceratophyllum demersum HOM05D002317 ORTHO05D002420 1.1e-06 57.4 53 49.1
CDE04G0782 Ceratophyllum demersum HOM05D002317 ORTHO05D002420 1.5e-06 57.0 53 47.2
GSVIVG01032617001 Vitis vinifera HOM05D002317 ORTHO05D002420 1.5e-06 57.0 45 48.9
Gohir.A05G352300 Gossypium hirsutum HOM05D002317 ORTHO05D002420 2.0e-06 56.6 49 49.0
Gohir.D04G060532 Gossypium hirsutum HOM05D002317 ORTHO05D002420 2.0e-06 56.6 49 49.0
Gohir.D04G060600 Gossypium hirsutum HOM05D002317 ORTHO05D002420 2.0e-06 56.6 49 49.0
Gorai.012G067500 Gossypium raimondii HOM05D002317 ORTHO05D002420 2.0e-06 56.6 49 49.0
Sc20g0002370 Simmondsia chinensis HOM05D002317 ORTHO05D002420 2.0e-06 56.6 53 49.1
TAR369G0742 Trochodendron aralioides HOM05D002317 ORTHO05D002420 2.0e-06 56.6 63 42.9
CANSAT56G2271 Cannabis sativa HOM05D002317 ORTHO05D002420 2.5e-06 56.2 53 50.9
Lj1C930G3 Lonicera japonica HOM05D002317 ORTHO05D002420 2.5e-06 56.2 41 56.1
Lj5g0002945 Lotus japonicus HOM05D002317 ORTHO05D002420 2.5e-06 56.2 49 42.9
Manes.10G038600 Manihot esculenta HOM05D002317 ORTHO05D002420 2.5e-06 56.2 45 51.1
arahy.Tifrunner.gnm1.ann1.MSYP3Y Arachis hypogaea HOM05D002317 ORTHO05D002420 3.3e-06 55.8 52 46.2
Rhsim03G0125700 Rhododendron simsii HOM05D002317 ORTHO05D002420 3.3e-06 55.8 47 44.7
ATR0759G004 Amborella trichopoda HOM05D002317 ORTHO05D002420 4.3e-06 55.5 53 49.1
arahy.Tifrunner.gnm1.ann1.QR9DU5 Arachis hypogaea HOM05D002317 ORTHO05D002420 4.3e-06 55.5 52 44.2
CSS0029275 Camellia sinensis var. sinensis HOM05D002317 ORTHO05D002420 4.3e-06 55.5 45 44.4
arahy.Tifrunner.gnm1.ann1.GPSB4L Arachis hypogaea HOM05D002317 ORTHO05D002420 5.7e-06 55.1 53 49.1
vmacro07137 Vaccinium macrocarpon HOM05D002317 ORTHO05D002420 5.7e-06 55.1 47 42.6
AUR62041631 Chenopodium quinoa HOM05D002317 ORTHO05D002420 9.7e-06 54.3 45 48.9
Ca_11316_v3 Cicer arietinum L. HOM05D002317 ORTHO05D002420 9.7e-06 54.3 52 42.3
Lj3C974G20 Lonicera japonica HOM05D001809 ORTHO05D001802 9.7e-06 54.3 44 50.0
Lalb_Chr21g0307211 Lupinus albus HOM05D002317 ORTHO05D002420 9.7e-06 54.3 50 44.0
Phvul.007G008700 Phaseolus vulgaris HOM05D002317 ORTHO05D002420 9.7e-06 54.3 45 51.1
HPP92_000707 Vanilla planifolia HOM05D002317 ORTHO05D002420 9.7e-06 54.3 45 44.4


User provided reference genes

Program Settings