Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1029100 Malus domestica HOM05D000677 ORTHO05D000727 1.9e-65 252.3 122 100.0
MD07G1029700 Malus domestica HOM05D000677 ORTHO05D000727 8.0e-48 193.7 197 57.9
Prupe.2G028600 Prunus persica HOM05D000677 ORTHO05D000727 4.1e-44 181.4 196 53.6
FAN03G0987 Fragaria x ananassa HOM05D000677 ORTHO05D000727 1.1e-41 173.3 143 60.8
FAN06G4392 Fragaria x ananassa HOM05D000677 ORTHO05D000727 1.9e-41 172.6 143 60.8
Ca_19648_v3 Cicer arietinum L. HOM05D000677 ORTHO05D000727 4.0e-39 164.9 143 57.3
TAR369G0724 Trochodendron aralioides HOM05D000677 ORTHO05D000727 1.7e-37 159.5 197 46.7
RcHm_v2.0_Chr1g0319551 Rosa chinensis HOM05D000677 ORTHO05D000727 2.2e-37 159.1 196 45.9
CiPaw.13G010300 Carya illinoinensis HOM05D000677 ORTHO05D000727 1.1e-36 156.8 193 46.6
arahy.Tifrunner.gnm1.ann1.J3JZ4F Arachis hypogaea HOM05D000677 ORTHO05D000727 1.9e-36 156.0 194 45.4
Dinv32056 Davidia involucrata HOM05D000677 ORTHO05D000727 1.9e-36 156.0 198 44.4
FvH4_7g02230 Fragaria vesca HOM05D000677 ORTHO05D000727 1.2e-35 153.3 196 44.4
FAN01G1016 Fragaria x ananassa HOM05D000677 ORTHO05D000727 1.6e-35 152.9 196 44.4
TWI38G2282 Tripterygium wilfordii HOM05D000677 ORTHO05D000727 2.1e-35 152.5 194 44.8
Sabra01G0017700 Salix brachista HOM05D000677 ORTHO05D000727 2.7e-35 152.1 194 44.8
Migut.D00795 Erythranthe guttata HOM05D000677 ORTHO05D000727 3.5e-35 151.8 198 43.9
QL04p013338 Quercus lobata HOM05D000677 ORTHO05D000727 3.5e-35 151.8 197 44.2
COL.COLO4_25836 Corchorus olitorius HOM05D000677 ORTHO05D000727 4.6e-35 151.4 192 45.8
Lj3g0019403 Lotus japonicus HOM05D000677 ORTHO05D000727 4.6e-35 151.4 196 44.4
Ciclev10033461m.g Citrus clementina HOM05D000677 ORTHO05D000727 7.8e-35 150.6 195 43.1
Eucgr.J01195 Eucalyptus grandis HOM05D000677 ORTHO05D000727 7.8e-35 150.6 197 44.7
Eucgr.J01196 Eucalyptus grandis HOM05D000677 ORTHO05D000727 7.8e-35 150.6 195 44.6
Glyma.09G225000 Glycine max HOM05D000677 ORTHO05D000727 1.0e-34 150.2 196 44.9
Eucgr.J01197 Eucalyptus grandis HOM05D000677 ORTHO05D000727 1.7e-34 149.4 195 44.6
Potri.001G023400 Populus trichocarpa HOM05D000677 ORTHO05D000727 1.7e-34 149.4 193 44.6
Psat0s3281g0040 Pisum sativum HOM05D000677 ORTHO05D000727 3.9e-34 148.3 196 44.4
Potri.003G202200 Populus trichocarpa HOM05D000677 ORTHO05D000727 3.9e-34 148.3 195 44.1
Medtr4g037670 Medicago truncatula HOM05D000677 ORTHO05D000727 6.6e-34 147.5 196 43.4
Thecc.10G005600 Theobroma cacao HOM05D000677 ORTHO05D000727 8.6e-34 147.1 191 44.0
Aqoxy2G00293 Aquilegia oxysepala HOM05D000677 ORTHO05D000727 1.1e-33 146.7 195 43.1
Duzib128G0211 Durio zibethinus HOM05D000677 ORTHO05D000727 1.1e-33 146.7 191 43.5
TPR.G21748 Trifolium pratense HOM05D000677 ORTHO05D000727 1.1e-33 146.7 196 43.4
Cc02_g29510 Coffea canephora HOM05D000677 ORTHO05D000727 1.9e-33 146.0 198 42.4
Gorai.013G015200 Gossypium raimondii HOM05D000677 ORTHO05D000727 1.9e-33 146.0 191 42.9
Medtr1g052505 Medicago truncatula HOM05D000677 ORTHO05D000727 2.5e-33 145.6 198 42.9
Psat2g118160 Pisum sativum HOM05D000677 ORTHO05D000727 2.5e-33 145.6 197 42.6
Cpa.g.sc197.8 Carica papaya HOM05D000677 ORTHO05D000727 3.3e-33 145.2 194 44.3
QL04p012780 Quercus lobata HOM05D000677 ORTHO05D000727 4.3e-33 144.8 195 44.1
QL04p013403 Quercus lobata HOM05D000677 ORTHO05D000727 4.3e-33 144.8 195 44.1
Gohir.A13G013000 Gossypium hirsutum HOM05D000677 ORTHO05D000727 9.6e-33 143.7 191 42.4
Oeu006104.1 Olea europaea HOM05D000677 ORTHO05D000727 9.6e-33 143.7 198 42.9
CAN.G179.42 Capsicum annuum HOM05D000677 ORTHO05D000727 1.2e-32 143.3 198 43.4
PGR044G1200 Punica granatum HOM05D000677 ORTHO05D000727 1.2e-32 143.3 196 42.9
CANSAT80G0361 Cannabis sativa HOM05D000677 ORTHO05D000727 2.1e-32 142.5 195 42.1
DCAR_022357 Daucus carota HOM05D000677 ORTHO05D000727 2.1e-32 142.5 190 43.2
Thecc.10G005500 Theobroma cacao HOM05D000677 ORTHO05D000727 2.1e-32 142.5 194 43.3
Lsat_1_v5_gn_1_98020 Lactuca sativa HOM05D000677 ORTHO05D000727 2.8e-32 142.1 192 43.2
Sopen01g030340 Solanum pennellii HOM05D000677 ORTHO05D000727 3.6e-32 141.7 197 43.1
Solyc01g068380.3 Solanum lycopersicum HOM05D000677 ORTHO05D000727 6.2e-32 141.0 197 43.1
CSS0009873 Camellia sinensis var. sinensis HOM05D000677 ORTHO05D000727 8.1e-32 140.6 196 42.9
Manes.04G164100 Manihot esculenta HOM05D000677 ORTHO05D000727 8.1e-32 140.6 193 40.9
CAN.G179.52 Capsicum annuum HOM05D000677 ORTHO05D000727 1.1e-31 140.2 199 42.7
Lalb_Chr03g0024231 Lupinus albus HOM05D000677 ORTHO05D000727 1.1e-31 140.2 196 41.3
EL10Ac2g02866 Beta vulgaris HOM05D000677 ORTHO05D000727 1.8e-31 139.4 196 41.8
CiPaw.13G010400 Carya illinoinensis HOM05D000677 ORTHO05D000727 3.1e-31 138.7 195 42.1
arahy.Tifrunner.gnm1.ann1.ZE4J6B Arachis hypogaea HOM05D000677 ORTHO05D000727 4.0e-31 138.3 180 43.3
MD07G1028400 Malus domestica HOM05D000677 ORTHO05D000727 5.2e-31 137.9 157 51.6
Phvul.011G014800 Phaseolus vulgaris HOM05D000677 ORTHO05D000727 5.2e-31 137.9 196 40.8
Phvul.011G014900 Phaseolus vulgaris HOM05D000677 ORTHO05D000727 5.2e-31 137.9 196 41.8
Sed0026976 Sechium edule HOM05D000677 ORTHO05D000727 5.2e-31 137.9 197 42.1
GSVIVG01000848001 Vitis vinifera HOM05D000677 ORTHO05D000727 8.9e-31 137.1 194 41.2
COL.COLO4_25840 Corchorus olitorius HOM05D000677 ORTHO05D000727 1.5e-30 136.3 195 40.5
HanXRQChr01g0016411 Helianthus annuus HOM05D000677 ORTHO05D000727 1.5e-30 136.3 192 41.1
Nitab4.5_0006307g0050 Nicotiana tabacum HOM05D000677 ORTHO05D000727 1.5e-30 136.3 197 40.6
MELO3C033753.2 Cucumis melo HOM05D000677 ORTHO05D000727 2.0e-30 136.0 199 39.7
CANSAT80G2597 Cannabis sativa HOM05D000677 ORTHO05D000727 7.6e-30 134.0 195 41.5
Haze_03095 Corylus avellana HOM05D000677 ORTHO05D000727 9.9e-30 133.7 101 65.3
MELO3C033949.2 Cucumis melo HOM05D000677 ORTHO05D000727 9.9e-30 133.7 197 39.1
CsaV3_5G024620 Cucumis sativus L. HOM05D000677 ORTHO05D000727 1.7e-29 132.9 199 39.2
CsaV3_5G024650 Cucumis sativus L. HOM05D000677 ORTHO05D000727 2.9e-29 132.1 197 39.1
ECA248G1819 Erigeron canadensis HOM05D000006 ORTHO05D000091 4.9e-29 131.3 192 38.5
Glyma.12G012000 Glycine max HOM05D000677 ORTHO05D000727 6.4e-29 131.0 178 43.3
SEGI_13686 Sequoiadendron giganteum HOM05D000677 ORTHO05D000727 6.4e-29 131.0 142 50.0
ClCG01G007610 Citrullus lanatus HOM05D000677 ORTHO05D000727 8.4e-29 130.6 127 52.8
QL04p012819 Quercus lobata HOM05D000677 ORTHO05D000727 1.1e-28 130.2 179 43.0
QL04p013364 Quercus lobata HOM05D000677 ORTHO05D000727 1.1e-28 130.2 179 43.0
VMungo1127G2073 Vigna mungo HOM05D000677 ORTHO05D000727 4.2e-28 128.3 179 42.5
AUR62002444 Chenopodium quinoa HOM05D000677 ORTHO05D000727 5.4e-28 127.9 132 53.0
AUR62026815 Chenopodium quinoa HOM05D000677 ORTHO05D000727 5.4e-28 127.9 196 39.8
Duzib106G0580 Durio zibethinus HOM05D000677 ORTHO05D000727 7.1e-28 127.5 222 36.5
Gohir.D13G014002 Gossypium hirsutum HOM05D000677 ORTHO05D000727 1.2e-27 126.7 176 41.5
Os01g0800500 Oryza sativa ssp. japonica HOM05D000677 ORTHO05D000727 1.2e-27 126.7 197 37.6
HanXRQChr13g0403851 Helianthus annuus HOM05D000677 ORTHO05D000727 2.1e-27 125.9 194 39.7
AUR62037236 Chenopodium quinoa HOM05D000677 ORTHO05D000727 2.7e-27 125.6 104 61.5
PSO513G0192 Papaver somniferum HOM05D000677 ORTHO05D000727 7.8e-27 124.0 195 39.0
RcHm_v2.0_Chr6g0289041 Rosa chinensis HOM05D000677 ORTHO05D000727 7.8e-27 124.0 180 41.7
HPP92_016886 Vanilla planifolia HOM05D000677 ORTHO05D000727 7.8e-27 124.0 197 38.1
AUR62037237 Chenopodium quinoa HOM05D000677 ORTHO05D000727 1.0e-26 123.6 196 38.3
Atru.chr11.2500 Acer truncatum HOM05D000677 ORTHO05D000727 1.3e-26 123.2 95 64.2
Hma1.2p1_0184F.1_g081110 Hydrangea macrophylla HOM05D000677 ORTHO05D000727 2.3e-26 122.5 183 41.0
PSO339G0815 Papaver somniferum HOM05D000677 ORTHO05D000727 2.3e-26 122.5 193 38.9
ATR0721G131 Amborella trichopoda HOM05D000677 ORTHO05D000727 5.1e-26 121.3 197 35.0
Haze_08484 Corylus avellana HOM05D000677 ORTHO05D000727 5.1e-26 121.3 95 60.0
Atru.chr11.2471 Acer truncatum HOM05D000677 ORTHO05D000727 8.7e-26 120.6 94 60.6
Sc10g0004250 Simmondsia chinensis HOM05D000677 ORTHO05D000727 8.7e-26 120.6 196 36.7
SEGI_15600 Sequoiadendron giganteum HOM05D000677 ORTHO05D000727 1.1e-25 120.2 198 37.9
Nn7g36482 Nelumbo nucifera HOM05D000677 ORTHO05D000727 1.5e-25 119.8 189 37.6
Hund15709 Selenicereus undatus HOM05D000677 ORTHO05D000727 4.3e-25 118.2 225 33.8
Peaxi162Scf00309g00120 Petunia axillaris HOM05D000677 ORTHO05D000727 1.3e-24 116.7 190 38.9
TWI38G0884 Tripterygium wilfordii HOM05D000677 ORTHO05D000727 6.2e-24 114.4 195 37.9
HPP92_016885 Vanilla planifolia HOM05D000677 ORTHO05D000727 8.1e-24 114.0 196 36.2
SEGI_19673 Sequoiadendron giganteum HOM05D000677 ORTHO05D000727 1.1e-23 113.6 197 37.1
Zm00001eb369470 Zea mays HOM05D000677 ORTHO05D000727 1.8e-23 112.8 196 33.7
SGA_v2.0_scaffold158G37453 Striga asiatica HOM05D000677 ORTHO05D000727 3.1e-23 112.1 156 39.7
SEGI_40315 Sequoiadendron giganteum HOM05D000677 ORTHO05D000727 4.0e-23 111.7 199 35.7
VMungo1127G2079 Vigna mungo HOM05D000677 ORTHO05D000727 9.9e-22 107.1 152 41.4
unitig_62.g23944 Utricularia gibba HOM05D000677 ORTHO05D000727 1.7e-21 106.3 199 34.2
TWI38G1249 Tripterygium wilfordii HOM05D000677 ORTHO05D000727 2.2e-21 105.9 194 36.6
Gorai.013G015400 Gossypium raimondii HOM05D000677 ORTHO05D000727 4.9e-21 104.8 150 38.7
Eucgr.J01199 Eucalyptus grandis HOM05D000677 ORTHO05D000727 6.4e-21 104.4 147 40.8
RcHm_v2.0_Chr4g0424731 Rosa chinensis HOM05D000677 ORTHO05D000727 6.4e-21 104.4 171 36.8
MBI13_g41711_MAGBIO Magnolia biondii HOM05D000677 ORTHO05D000727 1.4e-20 103.2 155 39.4
SEGI_03563 Sequoiadendron giganteum HOM05D000677 ORTHO05D000727 1.4e-20 103.2 201 32.3
Zm00001eb369460 Zea mays HOM05D000677 ORTHO05D000727 1.9e-20 102.8 192 35.4
Gohir.D13G014202 Gossypium hirsutum HOM05D000677 ORTHO05D000727 3.2e-20 102.1 153 37.3
Atru.chr11.2501 Acer truncatum HOM05D000677 ORTHO05D000727 1.6e-19 99.8 95 54.7
RcHm_v2.0_Chr4g0411981 Rosa chinensis HOM05D000677 ORTHO05D000727 2.7e-19 99.0 80 60.0
SMO356G0026 Selaginella moellendorffii HOM05D000677 ORTHO05D000727 1.7e-18 96.3 200 33.5
TWI38G1132 Tripterygium wilfordii HOM05D000677 ORTHO05D000727 4.3e-17 91.7 197 31.5
Haze_21840 Corylus avellana HOM05D000677 ORTHO05D014201 3.6e-16 88.6 63 63.5
Mapoly0014s0160 Marchantia polymorpha HOM05D000677 ORTHO05D000727 4.8e-16 88.2 201 31.3
Lj7A579T38 Lonicera japonica HOM05D000677 ORTHO05D000727 1.4e-15 86.7 148 36.5
DCAR_003235 Daucus carota HOM05D000063 ORTHO05D003101 9.0e-15 84.0 50 72.0
SMO356G0136 Selaginella moellendorffii HOM05D000677 ORTHO05D000727 1.5e-14 83.2 176 33.0
CANSAT35G0231 Cannabis sativa HOM05D000677 ORTHO05D000727 7.6e-14 80.9 52 65.4
MBI05_g17777_MAGBIO Magnolia biondii HOM05D000677 ORTHO05D014201 2.9e-13 79.0 53 64.2
CANSAT56G2618 Cannabis sativa HOM05D000677 ORTHO05D000727 6.4e-13 77.8 52 63.5
SMO122G0017 Selaginella moellendorffii HOM05D000677 ORTHO05D014201 3.2e-12 75.5 96 43.8
MD07G1028100 Malus domestica HOM05D000677 ORTHO05D014201 4.6e-11 71.6 35 94.3
MD07G1028500 Malus domestica HOM05D000677 ORTHO05D000727 4.6e-11 71.6 35 94.3
Nitab4.5_0001029g0090 Nicotiana tabacum HOM05D000677 ORTHO05D000727 1.0e-10 70.5 162 30.9
SMO117G0276 Selaginella moellendorffii HOM05D000677 ORTHO05D014201 6.7e-10 67.8 112 40.2
PGSC0003DMG400017958 Solanum tuberosum HOM05D000677 ORTHO05D000727 5.6e-09 64.7 35 82.9
SMO119G0182 Selaginella moellendorffii HOM05D000677 ORTHO05D014201 7.4e-09 64.3 133 33.8
SMO005G0003 Selaginella moellendorffii HOM05D000677 ORTHO05D014201 9.6e-09 63.9 133 34.6
SMO242G0003 Selaginella moellendorffii HOM05D000677 ORTHO05D014201 9.6e-09 63.9 133 34.6
SMO245G0017 Selaginella moellendorffii HOM05D000677 ORTHO05D014201 9.6e-09 63.9 133 34.6
Haze_21843 Corylus avellana HOM05D000677 ORTHO05D000727 1.3e-08 63.5 35 82.9
SMO361G0412 Selaginella moellendorffii HOM05D000677 ORTHO05D014201 2.8e-08 62.4 133 33.8
Haze_03116 Corylus avellana HOM05D000677 ORTHO05D000727 3.7e-08 62.0 39 69.2
Migut.D00794 Erythranthe guttata HOM05D000677 ORTHO05D000727 3.7e-08 62.0 35 77.1
SMO146G0081 Selaginella moellendorffii HOM05D000677 ORTHO05D014201 1.4e-07 60.1 120 33.3
Cc02_g29480 Coffea canephora HOM05D000677 ORTHO05D000727 1.8e-07 59.7 35 74.3
RcHm_v2.0_Chr4g0411971 Rosa chinensis HOM05D000677 ORTHO05D000727 2.4e-07 59.3 34 76.5
Haze_05316 Corylus avellana HOM05D000677 ORTHO05D014201 4.0e-07 58.5 46 56.5
AagrBONN_evm.TU.Sc2ySwM_228.1702 Anthoceros agrestis HOM05D000677 ORTHO05D000727 4.5e-06 55.1 191 26.7


User provided reference genes

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