Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1026800 Malus domestica HOM05D006592 ORTHO05D008122 0.0e+00 1153.3 570 100.0
Prupe.2G060600 Prunus persica HOM05D006592 ORTHO05D008122 5.3e-267 924.1 562 82.6
FvH4_3g41920 Fragaria vesca HOM05D006592 ORTHO05D008122 5.5e-208 728.0 551 68.4
FAN25G1190 Fragaria x ananassa HOM05D006592 ORTHO05D008122 2.1e-207 726.1 563 66.8
FAN11G2031 Fragaria x ananassa HOM05D006592 ORTHO05D008122 3.6e-207 725.3 551 68.4
RcHm_v2.0_Chr1g0331171 Rosa chinensis HOM05D006592 ORTHO05D008122 7.5e-205 717.6 553 67.5
FAN21G3043 Fragaria x ananassa HOM05D006592 ORTHO05D008122 2.4e-203 712.6 555 67.4
QL02p100032 Quercus lobata HOM05D006592 ORTHO05D008122 2.0e-189 666.4 488 68.9
Dinv37459 Davidia involucrata HOM05D006592 ORTHO05D008122 1.4e-187 660.2 544 63.2
Potri.003G105100 Populus trichocarpa HOM05D006592 ORTHO05D008122 1.7e-185 653.3 535 62.2
Sabra03G0072100 Salix brachista HOM05D006592 ORTHO05D008122 1.5e-184 650.2 525 63.2
Manes.17G005500 Manihot esculenta HOM05D006592 ORTHO05D008122 2.5e-184 649.4 490 66.3
TAR622G1375 Trochodendron aralioides HOM05D006592 ORTHO05D008122 2.1e-183 646.4 522 63.6
Hma1.2p1_1256F.1_g270670 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 1.4e-182 643.7 519 62.8
Ca_22475_v3 Cicer arietinum L. HOM05D006592 ORTHO05D008122 2.0e-181 639.8 474 65.2
arahy.Tifrunner.gnm1.ann1.6CV8VS Arachis hypogaea HOM05D006592 ORTHO05D008122 3.4e-181 639.0 514 60.7
arahy.Tifrunner.gnm1.ann1.35U8WI Arachis hypogaea HOM05D006592 ORTHO05D008122 7.5e-181 637.9 514 60.9
Haze_08005 Corylus avellana HOM05D006592 ORTHO05D008122 9.8e-181 637.5 475 67.6
TPR.G16815 Trifolium pratense HOM05D006592 ORTHO05D008122 2.9e-180 636.0 518 62.4
Lalb_Chr05g0229391 Lupinus albus HOM05D006592 ORTHO05D008122 4.9e-180 635.2 540 58.7
Phvul.003G276900 Phaseolus vulgaris HOM05D006592 ORTHO05D008122 1.4e-179 633.6 504 62.7
CiPaw.11G105000 Carya illinoinensis HOM05D006592 ORTHO05D008122 3.2e-179 632.5 415 72.8
Medtr8g071820 Medicago truncatula HOM05D006592 ORTHO05D008122 1.6e-178 630.2 540 59.1
GSVIVG01036935001 Vitis vinifera HOM05D006592 ORTHO05D008122 1.9e-176 623.2 526 61.6
Glyma.16G075200 Glycine max HOM05D006592 ORTHO05D008122 3.3e-176 622.5 514 60.5
Atru.chr6.2117 Acer truncatum HOM05D006592 ORTHO05D008122 9.5e-176 620.9 518 61.2
MELO3C010544.2 Cucumis melo HOM05D006592 ORTHO05D008122 6.8e-174 614.8 538 57.8
Actinidia29329 Actinidia chinensis HOM05D006592 ORTHO05D008122 1.2e-173 614.0 533 60.0
CsaV3_4G037940 Cucumis sativus L. HOM05D006592 ORTHO05D008122 2.0e-173 613.2 474 63.1
Eucgr.E01202 Eucalyptus grandis HOM05D006592 ORTHO05D008122 5.8e-173 611.7 560 58.4
vmacro05080 Vaccinium macrocarpon HOM05D006592 ORTHO05D008122 7.6e-173 611.3 543 57.8
DCAR_028262 Daucus carota HOM05D006592 ORTHO05D008122 6.4e-172 608.2 525 57.5
PSO063G4459 Papaver somniferum HOM05D006592 ORTHO05D008122 1.1e-171 607.4 488 61.7
ClCG11G016240 Citrullus lanatus HOM05D006592 ORTHO05D008122 1.4e-171 607.1 475 62.3
Duzib084G0624 Durio zibethinus HOM05D006592 ORTHO05D008122 2.4e-171 606.3 493 62.7
PSO782G0843 Papaver somniferum HOM05D006592 ORTHO05D008122 2.7e-170 602.8 487 61.4
Aqoxy7G04139 Aquilegia oxysepala HOM05D006592 ORTHO05D008122 7.8e-170 601.3 429 66.4
Nitab4.5_0004477g0030 Nicotiana tabacum HOM05D006592 ORTHO05D008122 4.3e-168 595.5 540 55.9
THA.LOC104814375 Tarenaya hassleriana HOM05D006592 ORTHO05D008122 9.6e-168 594.3 509 59.1
TWI60G0674 Tripterygium wilfordii HOM05D006592 ORTHO05D008122 4.7e-167 592.0 536 57.6
Thecc.03G323800 Theobroma cacao HOM05D006592 ORTHO05D008122 6.2e-167 591.7 440 66.4
PGR042G2051 Punica granatum HOM05D006592 ORTHO05D008122 8.1e-167 591.3 520 57.9
Thhalv10007328m.g Eutrema salsugineum HOM05D006592 ORTHO05D008122 3.1e-166 589.3 488 60.9
Rhsim07G0174700 Rhododendron simsii HOM05D006592 ORTHO05D008122 3.1e-166 589.3 442 64.5
PGSC0003DMG400024141 Solanum tuberosum HOM05D006592 ORTHO05D008122 2.0e-165 586.6 538 54.6
Nitab4.5_0000063g0390 Nicotiana tabacum HOM05D006592 ORTHO05D008122 3.4e-165 585.9 549 54.3
Solyc08g005860.3 Solanum lycopersicum HOM05D006592 ORTHO05D008122 5.8e-165 585.1 535 54.6
CAN.G561.14 Capsicum annuum HOM05D006592 ORTHO05D008122 9.9e-165 584.3 538 55.0
AT1G31410 Arabidopsis thaliana HOM05D006592 ORTHO05D008122 3.2e-163 579.3 488 61.5
Peaxi162Scf00045g01236 Petunia axillaris HOM05D006592 ORTHO05D008122 3.2e-163 579.3 542 55.0
AL1G49640 Arabidopsis lyrata HOM05D006592 ORTHO05D008122 1.2e-162 577.4 486 61.5
Carub.0001s2983 Capsella rubella HOM05D006592 ORTHO05D008122 4.6e-162 575.5 485 61.2
Sp1g27210 Schrenkiella parvula HOM05D006592 ORTHO05D008122 4.6e-162 575.5 490 59.4
SalBow8G4832 Salvia bowleyana HOM05D006592 ORTHO05D008122 1.7e-161 573.5 493 56.8
Cc00_g08640 Coffea canephora HOM05D006592 ORTHO05D008122 2.3e-161 573.2 430 63.0
Sopen08g001820 Solanum pennellii HOM05D006592 ORTHO05D008122 2.3e-161 573.2 557 52.1
Gohir.D08G168300 Gossypium hirsutum HOM05D006592 ORTHO05D008122 1.5e-160 570.5 430 65.1
Gorai.004G175600 Gossypium raimondii HOM05D006592 ORTHO05D008122 1.9e-160 570.1 415 67.0
SalBow8G1786 Salvia bowleyana HOM05D006592 ORTHO05D008122 1.9e-160 570.1 493 56.6
CDE11G0624 Ceratophyllum demersum HOM05D006592 ORTHO05D008122 1.6e-159 567.0 478 59.4
Aa31LG2G14540 Aethionema arabicum HOM05D006592 ORTHO05D008122 3.6e-159 565.8 504 57.3
BcaB03g13796 Brassica carinata HOM05D006592 ORTHO05D008122 1.1e-158 564.3 515 56.9
Lsat_1_v5_gn_5_55220 Lactuca sativa HOM05D006592 ORTHO05D008122 2.6e-157 559.7 506 56.1
Oeu028120.2 Olea europaea HOM05D006592 ORTHO05D008122 1.7e-156 557.0 491 58.5
BraA07t28736Z Brassica rapa HOM05D006592 ORTHO05D008122 2.9e-156 556.2 489 59.7
A07p09410 Brassica napus HOM05D006592 ORTHO05D008122 4.9e-156 555.4 488 59.4
HanXRQChr13g0411871 Helianthus annuus HOM05D006592 ORTHO05D008122 6.4e-156 555.1 501 55.1
ATR0829G075 Amborella trichopoda HOM05D006592 ORTHO05D008122 2.4e-155 553.1 450 58.2
SGA_v2.0_scaffold144G35824 Striga asiatica HOM05D006592 ORTHO05D008122 3.2e-155 552.7 511 54.6
EL10Ac5g11887 Beta vulgaris HOM05D006592 ORTHO05D008122 4.2e-155 552.4 409 64.1
COL.COLO4_16712 Corchorus olitorius HOM05D006592 ORTHO05D008122 4.2e-155 552.4 394 67.8
VMungo0251G2096 Vigna mungo HOM05D006592 ORTHO05D008122 4.2e-155 552.4 479 59.5
C07p14480 Brassica napus HOM05D006592 ORTHO05D008122 7.1e-155 551.6 488 59.0
Zm00001eb430350 Zea mays HOM05D006592 ORTHO05D008122 6.0e-154 548.5 404 62.9
BolC7t41947H Brassica oleracea HOM05D006592 ORTHO05D008122 7.9e-154 548.1 486 58.4
Migut.E01392 Erythranthe guttata HOM05D006592 ORTHO05D008122 1.0e-153 547.7 494 55.5
AUR62007438 Chenopodium quinoa HOM05D006592 ORTHO05D008122 3.0e-153 546.2 481 55.7
Ah.02g117360 Amaranthus hybridus HOM05D006592 ORTHO05D008122 2.8e-151 539.7 481 54.9
ECA240G2178 Erigeron canadensis HOM05D006592 ORTHO05D008122 8.1e-151 538.1 458 58.1
Hund14317 Selenicereus undatus HOM05D006592 ORTHO05D008122 2.6e-149 533.1 581 50.8
unitig_899.g15474 Utricularia gibba HOM05D006592 ORTHO05D008122 3.1e-134 483.0 466 52.4
Os04g0602200 Oryza sativa ssp. japonica HOM05D006592 ORTHO05D008122 1.0e-132 478.0 360 59.7
Hma1.2p1_1046F.1_g251540 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 9.3e-131 471.5 295 75.6
Psat4g109400 Pisum sativum HOM05D006592 ORTHO05D008122 2.6e-125 453.4 310 68.4
Glyma.16G106500 Glycine max HOM05D006592 ORTHO05D008122 9.4e-123 444.9 280 73.6
SMO244G0026 Selaginella moellendorffii HOM05D006592 ORTHO05D008122 6.1e-114 415.6 383 50.4
AagrBONN_evm.TU.Sc2ySwM_344.4668 Anthoceros agrestis HOM05D006592 ORTHO05D008122 6.7e-113 412.1 487 42.7
Pp3c1_19230 Physcomitrium patens HOM05D006592 ORTHO05D008122 7.4e-112 408.7 394 48.7
Gohir.A08G147100 Gossypium hirsutum HOM05D006592 ORTHO05D008122 1.1e-110 404.8 296 65.2
Mapoly0006s0240 Marchantia polymorpha HOM05D006592 ORTHO05D008122 1.2e-109 401.4 336 55.1
Sc01g0005980 Simmondsia chinensis HOM05D006592 ORTHO05D008122 1.6e-109 401.0 278 66.9
CARHR030900 Cardamine hirsuta HOM05D006592 ORTHO05D008122 5.9e-109 399.1 300 66.0
Nn1g09214 Nelumbo nucifera HOM05D006592 ORTHO05D008122 1.3e-108 397.9 528 45.1
MBI04_g30774_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 2.1e-98 364.0 561 40.3
CSS0028407 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 8.8e-97 358.6 271 67.5
Lj8A380T21 Lonicera japonica HOM05D006592 ORTHO05D008122 3.8e-92 343.2 235 68.9
Lj4g0008520 Lotus japonicus HOM05D006592 ORTHO05D008122 3.8e-92 343.2 241 68.9
AUR62027300 Chenopodium quinoa HOM05D006592 ORTHO05D008122 7.2e-91 339.0 481 40.1
CBR_g19872 Chara braunii HOM05D006592 ORTHO05D008122 2.8e-90 337.0 361 46.5
HPP92_015141 Vanilla planifolia HOM05D006592 ORTHO05D008122 8.0e-90 335.5 208 72.1
CBR_g37675 Chara braunii HOM05D006592 ORTHO05D008122 1.4e-89 334.7 363 45.2
CSS0043715 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 1.8e-86 324.3 256 65.2
CANSAT11G2102 Cannabis sativa HOM05D006592 ORTHO05D008122 5.6e-75 286.2 233 61.8
Sed0001244 Sechium edule HOM05D006592 ORTHO05D008122 3.6e-66 256.9 481 34.7
CSS0050204 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 3.7e-63 246.9 166 67.5
Cre06.g292100 Chlamydomonas reinhardtii HOM05D006592 ORTHO05D008122 7.6e-56 222.6 353 36.3
Lj4g0015969 Lotus japonicus HOM05D006592 ORTHO05D008122 2.6e-48 197.6 251 48.2
Glyma.16G106700 Glycine max HOM05D006592 ORTHO05D008122 8.4e-47 192.6 231 47.6
AagrBONN_evm.TU.Sc2ySwM_117.3387 Anthoceros agrestis HOM05D006592 ORTHO05D008122 1.3e-44 185.3 302 34.1
Cpa.g.sc137.28 Carica papaya HOM05D006592 ORTHO05D008122 3.0e-44 184.1 191 51.3
Psat4g134920 Pisum sativum HOM05D006592 ORTHO05D008122 1.9e-43 181.4 196 49.5
MCO09G637 Micromonas commoda HOM05D006592 ORTHO05D008122 6.9e-41 172.9 483 27.3
Cpa.g.sc137.29 Carica papaya HOM05D006592 ORTHO05D008122 2.2e-39 167.9 103 78.6
PRCOL_00001501 Prasinoderma coloniale HOM05D006592 ORTHO05D008122 7.1e-38 162.9 409 30.3
Sc01g0005990 Simmondsia chinensis HOM05D006592 ORTHO05D008122 8.7e-36 156.0 221 42.5
MBI14_g31659_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 2.8e-34 151.0 104 71.2
MBI02_g32478_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 3.5e-29 134.0 91 72.5
SEGI_06764 Sequoiadendron giganteum HOM05D006592 ORTHO05D008122 9.6e-27 125.9 151 43.7
Zm00001eb071790 Zea mays HOM05D006592 ORTHO05D008122 1.3e-26 125.6 322 32.3
Ciclev10004057m.g Citrus clementina HOM05D006592 ORTHO05D008122 3.9e-20 104.0 98 55.1
Dinv37458 Davidia involucrata HOM05D000040 ORTHO05D000267 7.6e-16 89.7 66 69.7
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 9.3e-14 82.8 63 57.1
Hma1.2p1_1046F.1_g251530 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.4e-09 68.9 41 75.6
C08p16710 Brassica napus HOM05D006592 ORTHO05D008122 2.4e-09 68.2 35 71.4
SEGI_04489 Sequoiadendron giganteum HOM05D006592 ORTHO05D008122 3.2e-06 57.8 45 60.0


User provided reference genes

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