Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1013000 Malus domestica HOM05D006111 ORTHO05D007683 6.5e-221 770.4 382 100.0
MD02G1308600 Malus domestica HOM05D006111 ORTHO05D007683 7.7e-214 746.9 382 97.1
Prupe.2G015400 Prunus persica HOM05D006111 ORTHO05D007683 6.3e-200 700.7 383 91.9
RcHm_v2.0_Chr1g0316521 Rosa chinensis HOM05D006111 ORTHO05D007683 9.8e-185 650.2 382 85.9
FvH4_7g01190 Fragaria vesca HOM05D006111 ORTHO05D007683 1.3e-181 639.8 382 85.1
FAN06G2641 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.3e-181 639.8 382 85.1
FAN10G2658 Fragaria x ananassa HOM05D006111 ORTHO05D007683 3.0e-181 638.6 382 85.1
FAN03G2464 Fragaria x ananassa HOM05D006111 ORTHO05D007683 6.6e-181 637.5 382 84.8
FAN01G0043 Fragaria x ananassa HOM05D006111 ORTHO05D007683 2.5e-180 635.6 382 84.8
QL04p008312 Quercus lobata HOM05D006111 ORTHO05D007683 4.6e-174 614.8 383 80.9
CiPaw.13G006200 Carya illinoinensis HOM05D006111 ORTHO05D007683 5.1e-173 611.3 382 80.6
Gorai.004G171600 Gossypium raimondii HOM05D006111 ORTHO05D007683 5.6e-172 607.8 382 77.7
Dinv43431 Davidia involucrata HOM05D006111 ORTHO05D007683 7.3e-172 607.4 385 80.0
CSS0012829 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 1.4e-170 603.2 382 80.4
CSS0034733 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 1.4e-170 603.2 382 80.4
Gohir.D08G164600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 1.8e-170 602.8 382 77.0
Eucgr.J01211 Eucalyptus grandis HOM05D006111 ORTHO05D007683 6.8e-170 600.9 384 79.2
Duzib268G0420 Durio zibethinus HOM05D006111 ORTHO05D007683 9.9e-169 597.0 384 78.1
TWI09G1338 Tripterygium wilfordii HOM05D006111 ORTHO05D007683 1.7e-168 596.3 382 77.7
Atru.chr11.2607 Acer truncatum HOM05D006111 ORTHO05D007683 6.4e-168 594.3 384 79.2
Ciclev10031806m.g Citrus clementina HOM05D006111 ORTHO05D007683 1.9e-167 592.8 378 78.0
Thecc.01G409400 Theobroma cacao HOM05D006111 ORTHO05D007683 5.4e-167 591.3 385 77.1
Nn7g36241 Nelumbo nucifera HOM05D006111 ORTHO05D007683 7.1e-167 590.9 393 77.6
PGR044G0412 Punica granatum HOM05D006111 ORTHO05D007683 2.1e-166 589.3 393 77.4
Manes.10G140800 Manihot esculenta HOM05D006111 ORTHO05D007683 4.6e-166 588.2 382 77.7
Sc10g0000130 Simmondsia chinensis HOM05D006111 ORTHO05D007683 6.0e-166 587.8 386 76.7
TAR623G0061 Trochodendron aralioides HOM05D006111 ORTHO05D007683 6.0e-166 587.8 385 78.4
Potri.009G059600 Populus trichocarpa HOM05D006111 ORTHO05D007683 7.8e-166 587.4 383 76.8
CAN.G666.14 Capsicum annuum HOM05D006111 ORTHO05D007683 3.9e-165 585.1 382 77.0
MBI02_g05669_MAGBIO Magnolia biondii HOM05D006111 ORTHO05D007683 2.8e-163 578.9 388 74.7
SalBow6G6970 Salvia bowleyana HOM05D006111 ORTHO05D007683 2.8e-163 578.9 391 76.0
SalBow6G4116 Salvia bowleyana HOM05D006111 ORTHO05D007683 3.6e-163 578.6 391 76.0
Oeu014586.1 Olea europaea HOM05D006111 ORTHO05D007683 4.8e-163 578.2 392 76.3
Potri.009G059800 Populus trichocarpa HOM05D006111 ORTHO05D007683 2.4e-162 575.9 383 76.0
EL10Ac2g04342 Beta vulgaris HOM05D006111 ORTHO05D007683 5.3e-162 574.7 392 74.5
PSO339G0604 Papaver somniferum HOM05D006111 ORTHO05D007683 5.3e-162 574.7 386 75.9
Aqoxy1G00288 Aquilegia oxysepala HOM05D006111 ORTHO05D007683 1.5e-161 573.2 395 73.7
PSO384G4428 Papaver somniferum HOM05D006111 ORTHO05D007683 2.6e-161 572.4 386 75.6
Lalb_Chr01g0015831 Lupinus albus HOM05D006111 ORTHO05D007683 3.4e-161 572.0 382 74.9
CsaV3_7G030960 Cucumis sativus L. HOM05D006111 ORTHO05D007683 5.8e-161 571.2 383 75.7
Peaxi162Scf00818g00127 Petunia axillaris HOM05D006111 ORTHO05D007683 5.8e-161 571.2 394 74.4
COL.COLO4_04864 Corchorus olitorius HOM05D006111 ORTHO05D007683 1.7e-160 569.7 383 75.7
ClCG09G004060 Citrullus lanatus HOM05D006111 ORTHO05D007683 2.9e-160 568.9 389 74.8
DCAR_015173 Daucus carota HOM05D006111 ORTHO05D007683 4.9e-160 568.2 386 74.4
CANSAT80G0546 Cannabis sativa HOM05D006111 ORTHO05D007683 4.2e-159 565.1 391 74.7
MSTRG.17026 Avicennia marina HOM05D006111 ORTHO05D007683 9.3e-159 563.9 391 74.2
vmacro21191 Vaccinium macrocarpon HOM05D006111 ORTHO05D007683 1.2e-158 563.5 461 65.9
MELO3C023560.2 Cucumis melo HOM05D006111 ORTHO05D007683 2.7e-158 562.4 401 73.3
Sed0027336 Sechium edule HOM05D006111 ORTHO05D007683 3.5e-158 562.0 385 75.1
Sopen02g001570 Solanum pennellii HOM05D006111 ORTHO05D007683 3.5e-158 562.0 369 75.9
Nitab4.5_0001001g0030 Nicotiana tabacum HOM05D006111 ORTHO05D007683 6.0e-158 561.2 383 74.2
Solyc02g005200.4 Solanum lycopersicum HOM05D006111 ORTHO05D007683 2.3e-157 559.3 369 75.3
Migut.N01606 Erythranthe guttata HOM05D006111 ORTHO05D007683 6.6e-157 557.8 387 73.4
THA.LOC104819080 Tarenaya hassleriana HOM05D006111 ORTHO05D007683 6.6e-157 557.8 389 74.0
Ah.10g038770 Amaranthus hybridus HOM05D006111 ORTHO05D007683 4.3e-156 555.1 391 72.9
Cfa010790 Carpinus fangiana HOM05D006111 ORTHO05D007683 5.6e-156 554.7 382 75.1
HanXRQChr09g0260521 Helianthus annuus HOM05D006111 ORTHO05D007683 5.6e-156 554.7 378 74.3
Thhalv10020943m.g Eutrema salsugineum HOM05D006111 ORTHO05D007683 2.1e-155 552.7 386 73.6
Lsat_1_v5_gn_4_136121 Lactuca sativa HOM05D006111 ORTHO05D007683 4.8e-155 551.6 382 73.8
Hund21484 Selenicereus undatus HOM05D006111 ORTHO05D007683 1.1e-154 550.4 388 71.9
PGSC0003DMG400006635 Solanum tuberosum HOM05D006111 ORTHO05D007683 1.8e-154 549.7 373 74.3
Lj3g0026579 Lotus japonicus HOM05D006111 ORTHO05D007683 4.0e-154 548.5 385 70.6
Sp3g06920 Schrenkiella parvula HOM05D006111 ORTHO05D007683 4.0e-154 548.5 386 72.5
CARHR082760 Cardamine hirsuta HOM05D006111 ORTHO05D007683 9.0e-154 547.4 382 73.6
arahy.Tifrunner.gnm1.ann1.M31XXH Arachis hypogaea HOM05D006111 ORTHO05D007683 1.5e-153 546.6 386 72.8
arahy.Tifrunner.gnm1.ann1.YZE6TL Arachis hypogaea HOM05D006111 ORTHO05D007683 1.5e-153 546.6 386 72.8
Cc01_g06700 Coffea canephora HOM05D006111 ORTHO05D007683 7.6e-153 544.3 385 71.7
GSVIVG01032129001 Vitis vinifera HOM05D006111 ORTHO05D007683 7.6e-153 544.3 299 87.0
AT3G08010 Arabidopsis thaliana HOM05D006111 ORTHO05D007683 6.4e-152 541.2 383 72.8
AL3G19390 Arabidopsis lyrata HOM05D006111 ORTHO05D007683 1.1e-151 540.4 383 72.6
Carub.0003s0759 Capsella rubella HOM05D006111 ORTHO05D007683 1.1e-151 540.4 383 72.1
Sabra09G0044000 Salix brachista HOM05D006111 ORTHO05D007683 1.4e-151 540.0 431 66.8
C03p43240 Brassica napus HOM05D006111 ORTHO05D007683 4.2e-151 538.5 382 72.0
SGA_v2.0_scaffold24G10670 Striga asiatica HOM05D006111 ORTHO05D007683 6.0e-150 534.6 391 71.4
Rhsim01G0128600 Rhododendron simsii HOM05D006111 ORTHO05D007683 3.3e-148 528.9 491 59.9
Aa31LG5G18560 Aethionema arabicum HOM05D006111 ORTHO05D007683 3.7e-147 525.4 381 70.1
Glyma.15G275900 Glycine max HOM05D006111 ORTHO05D007683 1.5e-145 520.0 386 68.9
Phvul.005G024500 Phaseolus vulgaris HOM05D006111 ORTHO05D007683 3.4e-145 518.8 382 69.1
Cpa.g.sc125.25 Carica papaya HOM05D006111 ORTHO05D007683 7.6e-145 517.7 426 66.0
Glyma.10G089700 Glycine max HOM05D006111 ORTHO05D007683 1.3e-144 516.9 386 68.9
Ca_14461_v3 Cicer arietinum L. HOM05D006111 ORTHO05D007683 7.1e-143 511.1 383 67.4
Lj5C169G9 Lonicera japonica HOM05D006111 ORTHO05D007683 2.1e-142 509.6 283 85.9
VMungo1080G1123 Vigna mungo HOM05D006111 ORTHO05D007683 4.6e-142 508.4 382 68.3
ATR0332G055 Amborella trichopoda HOM05D006111 ORTHO05D007683 6.0e-142 508.1 382 66.5
unitig_749.g14328 Utricularia gibba HOM05D006111 ORTHO05D007683 3.0e-141 505.8 367 69.2
Nitab4.5_0000139g0200 Nicotiana tabacum HOM05D006111 ORTHO05D007683 9.6e-140 500.7 385 68.1
Medtr3g030950 Medicago truncatula HOM05D006111 ORTHO05D007683 1.3e-139 500.4 384 66.1
AUR62043480 Chenopodium quinoa HOM05D006111 ORTHO05D007683 4.8e-139 498.4 391 67.5
HPP92_009763 Vanilla planifolia HOM05D006111 ORTHO05D007683 2.5e-135 486.1 387 66.9
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 1.6e-134 483.4 284 81.3
Psat5g208360 Pisum sativum HOM05D006111 ORTHO05D007683 1.6e-134 483.4 395 64.6
AUR62009394 Chenopodium quinoa HOM05D006111 ORTHO05D007683 8.7e-133 477.6 391 65.2
AUR62023076 Chenopodium quinoa HOM05D006111 ORTHO05D007683 5.7e-132 474.9 391 64.7
Os02g0610800 Oryza sativa ssp. japonica HOM05D006111 ORTHO05D007683 4.1e-130 468.8 304 71.7
Psat3g069160 Pisum sativum HOM05D006111 ORTHO05D007683 1.3e-128 463.8 296 74.7
Actinidia21546 Actinidia chinensis HOM05D006111 ORTHO05D007683 2.0e-124 449.9 382 65.2
Haze_03183 Corylus avellana HOM05D006111 ORTHO05D007683 9.7e-124 447.6 323 73.1
CDE05G1285 Ceratophyllum demersum HOM05D006111 ORTHO05D007683 3.7e-123 445.7 364 64.0
Pp3c5_6760 Physcomitrium patens HOM05D006111 ORTHO05D007683 1.1e-106 391.0 293 61.8
Pp3c6_22710 Physcomitrium patens HOM05D006111 ORTHO05D007683 1.4e-106 390.6 330 58.2
Mapoly0153s0005 Marchantia polymorpha HOM05D006111 ORTHO05D007683 3.8e-104 382.5 340 54.7
Gohir.A08G143600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 6.5e-104 381.7 249 73.9
BcaB03g11554 Brassica carinata HOM05D006111 ORTHO05D007683 8.5e-104 381.3 228 78.9
AagrBONN_evm.TU.Sc2ySwM_344.1799 Anthoceros agrestis HOM05D006111 ORTHO05D007683 4.8e-99 365.5 293 57.0
A03p35610 Brassica napus HOM05D006111 ORTHO05D007683 5.4e-98 362.1 213 80.3
BolC3t16593H Brassica oleracea HOM05D006111 ORTHO05D007683 5.4e-98 362.1 213 80.3
BraA03t12736Z Brassica rapa HOM05D006111 ORTHO05D007683 5.4e-98 362.1 213 80.3
Zm00001eb246820 Zea mays HOM05D006111 ORTHO05D007683 1.0e-96 357.8 228 72.4
Medtr3g030975 Medicago truncatula HOM05D006111 ORTHO05D007683 2.2e-91 340.1 213 76.1
Actinidia20661 Actinidia chinensis HOM05D006111 ORTHO05D007683 1.8e-85 320.5 292 60.3
SMO353G0296 Selaginella moellendorffii HOM05D006111 ORTHO05D007683 2.0e-84 317.0 290 51.4
Prupe.2G016000 Prunus persica HOM05D006111 ORTHO05D007683 8.9e-77 291.6 158 91.8
PRCOL_00003534 Prasinoderma coloniale HOM05D006111 ORTHO05D007683 2.2e-75 287.0 304 45.7
TPR.G35304 Trifolium pratense HOM05D006111 ORTHO05D007683 3.2e-74 283.1 230 62.6
Cre17.g702500 Chlamydomonas reinhardtii HOM05D006111 ORTHO05D007683 1.0e-72 278.1 287 45.3
HPP92_009753 Vanilla planifolia HOM05D006111 ORTHO05D007683 1.5e-71 274.2 177 74.6
MCO10G268 Micromonas commoda HOM05D006111 ORTHO05D007683 1.4e-69 267.7 278 47.1
QL04p008446 Quercus lobata HOM05D006111 ORTHO05D007683 9.9e-60 235.0 135 83.7
A03p35600 Brassica napus HOM05D006111 ORTHO05D007683 9.0e-45 185.3 167 63.5
CBR_g5582 Chara braunii HOM05D006111 ORTHO05D007683 1.2e-41 174.9 161 52.2
SEGI_32608 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 1.2e-41 174.9 108 74.1
HanXRQChr12g0362881 Helianthus annuus HOM05D006111 ORTHO05D007683 1.9e-34 151.0 108 67.6
CBR_g5588 Chara braunii HOM05D006111 ORTHO05D007683 3.0e-32 143.7 97 66.0
HPP92_009752 Vanilla planifolia HOM05D006111 ORTHO05D007683 6.7e-32 142.5 172 53.5
SEGI_00353 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 6.0e-25 119.4 87 64.4
Medtr8g104810 Medicago truncatula HOM05D006111 ORTHO05D007683 8.2e-22 109.0 64 75.0
TPR.G36152 Trifolium pratense HOM05D006111 ORTHO05D007683 3.3e-15 87.0 107 48.6
C03p43260 Brassica napus HOM05D006111 ORTHO05D007683 9.7e-15 85.5 47 80.9
BolC3t16595H Brassica oleracea HOM05D006111 ORTHO05D007683 9.7e-15 85.5 47 80.9
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 3.7e-06 57.0 43 62.8


User provided reference genes

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