Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1011800 Malus domestica HOM05D004614 ORTHO05D005339 3.5e-78 295.0 165 100.0
THA.LOC104813167 Tarenaya hassleriana HOM05D004614 ORTHO05D005339 3.5e-62 241.9 185 75.7
AUR62036884 Chenopodium quinoa HOM05D004614 ORTHO05D005339 7.8e-62 240.7 181 69.6
Migut.C00954 Erythranthe guttata HOM05D004614 ORTHO05D005339 1.0e-61 240.4 185 74.6
Cc10_g00730 Coffea canephora HOM05D004614 ORTHO05D005339 3.0e-61 238.8 185 75.1
Hma1.2p1_0507F.1_g168400 Hydrangea macrophylla HOM05D004614 ORTHO05D005339 3.9e-61 238.4 185 75.1
Peaxi162Scf00893g00434 Petunia axillaris HOM05D004614 ORTHO05D005339 8.6e-61 237.3 180 80.0
Cfa014064 Carpinus fangiana HOM05D004614 ORTHO05D005339 1.1e-60 236.9 185 74.1
DCAR_016768 Daucus carota HOM05D004614 ORTHO05D005339 2.5e-60 235.7 185 74.1
TWI56G0787 Tripterygium wilfordii HOM05D004614 ORTHO05D005339 3.3e-60 235.3 185 73.5
BcaC07g37479 Brassica carinata HOM05D004614 ORTHO05D005339 4.3e-60 235.0 185 72.4
A08p07800 Brassica napus HOM05D004614 ORTHO05D005339 4.3e-60 235.0 185 72.4
C08p09450 Brassica napus HOM05D004614 ORTHO05D005339 4.3e-60 235.0 185 72.4
BolC8t47801H Brassica oleracea HOM05D004614 ORTHO05D005339 4.3e-60 235.0 185 72.4
BraA08t32800Z Brassica rapa HOM05D004614 ORTHO05D005339 4.3e-60 235.0 185 72.4
Duzib093G0152 Durio zibethinus HOM05D004614 ORTHO05D005339 4.3e-60 235.0 182 75.3
Sp1g32010 Schrenkiella parvula HOM05D004614 ORTHO05D005339 4.3e-60 235.0 185 72.4
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 5.6e-60 234.6 185 73.0
AL1G51310 Arabidopsis lyrata HOM05D004614 ORTHO05D005339 9.5e-60 233.8 185 71.9
AT1G42430 Arabidopsis thaliana HOM05D004614 ORTHO05D005339 9.5e-60 233.8 185 71.9
Carub.0001s3422 Capsella rubella HOM05D004614 ORTHO05D005339 9.5e-60 233.8 185 71.9
BcaB04g17805 Brassica carinata HOM05D004614 ORTHO05D005339 1.2e-59 233.4 185 71.9
Thhalv10004272m.g Eutrema salsugineum HOM05D004614 ORTHO05D005339 1.6e-59 233.0 185 71.9
Aqoxy6G01739 Aquilegia oxysepala HOM05D004614 ORTHO05D005339 2.1e-59 232.6 185 71.4
Sed0024410 Sechium edule HOM05D004614 ORTHO05D005339 2.8e-59 232.3 185 71.9
MELO3C026543.2 Cucumis melo HOM05D004614 ORTHO05D005339 4.7e-59 231.5 196 69.4
Phvul.009G010200 Phaseolus vulgaris HOM05D004614 ORTHO05D005339 3.1e-58 228.8 185 75.1
Psat5g011520 Pisum sativum HOM05D004614 ORTHO05D005339 3.1e-58 228.8 185 75.1
TPR.G38127 Trifolium pratense HOM05D004614 ORTHO05D005339 3.1e-58 228.8 185 75.1
VMungo1309G2703 Vigna mungo HOM05D004614 ORTHO05D005339 3.1e-58 228.8 185 75.1
Lj1g0005022 Lotus japonicus HOM05D004614 ORTHO05D005339 5.2e-58 228.0 185 70.3
unitig_82.g27116 Utricularia gibba HOM05D004614 ORTHO05D005339 5.2e-58 228.0 185 68.6
Glyma.04G018400 Glycine max HOM05D004614 ORTHO05D005339 6.8e-58 227.6 185 74.6
Glyma.06G018700 Glycine max HOM05D004614 ORTHO05D005339 6.8e-58 227.6 185 74.6
Medtr3g115210 Medicago truncatula HOM05D004614 ORTHO05D005339 6.8e-58 227.6 185 73.5
FAN20G3039 Fragaria x ananassa HOM05D004614 ORTHO05D005339 2.6e-57 225.7 184 76.6
Potri.002G011300 Populus trichocarpa HOM05D004614 ORTHO05D005339 3.4e-57 225.3 185 70.8
QL02p013984 Quercus lobata HOM05D004614 ORTHO05D005339 3.4e-57 225.3 185 70.3
Peaxi162Scf00064g01132 Petunia axillaris HOM05D004614 ORTHO05D005339 4.4e-57 224.9 186 70.4
Sc15g0004500 Simmondsia chinensis HOM05D004614 ORTHO05D005339 7.5e-57 224.2 185 70.8
RcHm_v2.0_Chr6g0304201 Rosa chinensis HOM05D004614 ORTHO05D005339 9.8e-57 223.8 185 75.7
Ca_15438_v3 Cicer arietinum L. HOM05D004614 ORTHO05D005339 2.2e-56 222.6 185 73.5
FvH4_2g37530 Fragaria vesca HOM05D004614 ORTHO05D005339 2.2e-56 222.6 185 75.7
FAN15G3067 Fragaria x ananassa HOM05D004614 ORTHO05D005339 2.2e-56 222.6 185 75.7
FAN27G1062 Fragaria x ananassa HOM05D004614 ORTHO05D005339 2.2e-56 222.6 185 75.7
Lalb_Chr11g0061661 Lupinus albus HOM05D004614 ORTHO05D005339 2.9e-56 222.2 185 73.5
TAR376G0430 Trochodendron aralioides HOM05D004614 ORTHO05D005339 4.9e-56 221.5 193 67.4
Sopen12g031480 Solanum pennellii HOM05D004614 ORTHO05D005339 4.1e-55 218.4 185 73.5
Nn5g30931 Nelumbo nucifera HOM05D004614 ORTHO05D005339 2.0e-54 216.1 185 69.2
CSS0048285 Camellia sinensis var. sinensis HOM05D004614 ORTHO05D005339 6.0e-54 214.5 185 70.3
Ah.00g000370 Amaranthus hybridus HOM05D004614 ORTHO05D005339 1.3e-53 213.4 185 70.3
CDE02G2145 Ceratophyllum demersum HOM05D004614 ORTHO05D005339 6.6e-53 211.1 185 69.2
PGR031G0851 Punica granatum HOM05D004614 ORTHO05D005339 6.6e-53 211.1 185 70.3
Lj4A805T24 Lonicera japonica HOM05D004614 ORTHO05D005339 8.6e-53 210.7 185 72.4
TAR625G0334 Trochodendron aralioides HOM05D004614 ORTHO05D005339 2.5e-52 209.1 185 68.6
Gohir.A01G106500 Gossypium hirsutum HOM05D004614 ORTHO05D005339 4.3e-52 208.4 185 65.4
HanXRQChr15g0492731 Helianthus annuus HOM05D004614 ORTHO05D005339 5.6e-52 208.0 179 69.8
CsaV3_6G031620 Cucumis sativus L. HOM05D004614 ORTHO05D005339 1.4e-50 203.4 185 68.1
Ciclev10001231m.g Citrus clementina HOM05D004614 ORTHO05D005339 4.0e-50 201.8 185 68.6
MD08G1002900 Malus domestica HOM05D004614 ORTHO05D005339 4.0e-50 201.8 185 68.6
CANSAT25G1550 Cannabis sativa HOM05D004614 ORTHO05D005339 6.8e-50 201.1 182 69.2
MD15G1002600 Malus domestica HOM05D004614 ORTHO05D005339 6.8e-50 201.1 185 68.1
Oeu056211.1 Olea europaea HOM05D004614 ORTHO05D005339 6.8e-50 201.1 128 96.1
Manes.05G134900 Manihot esculenta HOM05D004614 ORTHO05D005339 8.9e-50 200.7 185 68.1
Prupe.1G354900 Prunus persica HOM05D004614 ORTHO05D005339 8.9e-50 200.7 185 68.1
Thecc.08G058000 Theobroma cacao HOM05D004614 ORTHO05D005339 8.9e-50 200.7 185 67.6
Mapoly0189s0007 Marchantia polymorpha HOM05D004614 ORTHO05D005339 2.0e-49 199.5 185 64.3
vmacro04401 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 4.4e-49 198.4 185 67.0
Actinidia29786 Actinidia chinensis HOM05D004614 ORTHO05D005339 9.8e-49 197.2 185 67.6
ECA232G3530 Erigeron canadensis HOM05D004614 ORTHO05D005339 1.7e-48 196.4 185 67.0
Nn6g31744 Nelumbo nucifera HOM05D004614 ORTHO05D005339 2.9e-48 195.7 185 67.0
Hund01763 Selenicereus undatus HOM05D004614 ORTHO05D005339 6.4e-48 194.5 185 66.5
SGA_v2.0_scaffold275G46591 Striga asiatica HOM05D004614 ORTHO05D005339 6.4e-48 194.5 185 66.5
GSVIVG01008677001 Vitis vinifera HOM05D004614 ORTHO05D005339 8.3e-48 194.1 185 71.4
Eucgr.F03550 Eucalyptus grandis HOM05D004614 ORTHO05D005339 1.1e-47 193.7 185 66.5
Aa31LG8G13830 Aethionema arabicum HOM05D004614 ORTHO05D005339 1.4e-47 193.4 152 75.7
HPP92_020707 Vanilla planifolia HOM05D004614 ORTHO05D005339 5.4e-47 191.4 186 59.7
TWI36G0356 Tripterygium wilfordii HOM05D004614 ORTHO05D005339 7.1e-47 191.0 185 65.4
COL.COLO4_04001 Corchorus olitorius HOM05D004614 ORTHO05D005339 1.2e-46 190.3 185 68.6
Dinv25909 Davidia involucrata HOM05D004614 ORTHO05D005339 2.1e-46 189.5 185 64.9
Lsat_1_v5_gn_9_45021 Lactuca sativa HOM05D004614 ORTHO05D005339 2.1e-46 189.5 185 63.8
PGSC0003DMG400029318 Solanum tuberosum HOM05D004614 ORTHO05D005339 2.1e-46 189.5 185 70.8
CAN.G311.111 Capsicum annuum HOM05D004614 ORTHO05D005339 3.5e-46 188.7 185 66.5
CiPaw.08G072400 Carya illinoinensis HOM05D004614 ORTHO05D005339 1.0e-45 187.2 185 64.9
Cpa.g.sc26.206 Carica papaya HOM05D004614 ORTHO05D005339 1.3e-45 186.8 185 69.2
Sabra05G0193200 Salix brachista HOM05D004614 ORTHO05D005339 8.6e-45 184.1 185 68.1
Solyc04g082290.4 Solanum lycopersicum HOM05D004614 ORTHO05D005339 8.6e-45 184.1 185 63.2
Sopen04g035910 Solanum pennellii HOM05D004614 ORTHO05D005339 8.6e-45 184.1 185 63.2
PGSC0003DMG400009975 Solanum tuberosum HOM05D004614 ORTHO05D005339 8.6e-45 184.1 185 63.2
Duzib116G0199 Durio zibethinus HOM05D004614 ORTHO05D005339 1.1e-44 183.7 185 67.0
Pp3c7_400 Physcomitrium patens HOM05D004614 ORTHO05D005339 1.5e-44 183.3 186 58.6
Actinidia37970 Actinidia chinensis HOM05D004614 ORTHO05D005339 4.3e-44 181.8 185 68.6
Solyc12g094570.1 Solanum lycopersicum HOM05D004614 ORTHO05D005339 4.3e-44 181.8 152 76.3
Manes.18G005900 Manihot esculenta HOM05D004614 ORTHO05D005339 5.6e-44 181.4 179 67.0
Potri.005G249700 Populus trichocarpa HOM05D004614 ORTHO05D005339 2.1e-43 179.5 185 67.0
AUR62043351 Chenopodium quinoa HOM05D004614 ORTHO05D005339 3.6e-43 178.7 163 60.7
SMO169G0316 Selaginella moellendorffii HOM05D004614 ORTHO05D005339 4.7e-43 178.3 186 59.7
HanXRQChr05g0146811 Helianthus annuus HOM05D004614 ORTHO05D005339 1.8e-42 176.4 185 66.5
Os03g0133300 Oryza sativa ssp. japonica HOM05D004614 ORTHO05D005339 4.0e-42 175.3 185 65.4
HanXRQChr14g0428261 Helianthus annuus HOM05D004614 ORTHO05D005339 6.8e-42 174.5 185 61.6
CiPaw.07G139400 Carya illinoinensis HOM05D004614 ORTHO05D005339 8.9e-42 174.1 185 64.9
Gohir.A05G179800 Gossypium hirsutum HOM05D004614 ORTHO05D005339 2.6e-41 172.6 185 65.9
Gorai.009G188200 Gossypium raimondii HOM05D004614 ORTHO05D005339 2.6e-41 172.6 185 65.9
Rhsim07G0254700 Rhododendron simsii HOM05D004614 ORTHO05D005339 9.9e-41 170.6 185 60.0
Dinv31932 Davidia involucrata HOM05D004614 ORTHO05D005339 1.7e-40 169.9 153 69.3
Rhsim06G0008000 Rhododendron simsii HOM05D004614 ORTHO05D005339 1.7e-40 169.9 182 61.0
Duzib041G0192 Durio zibethinus HOM05D004614 ORTHO05D005339 8.4e-40 167.5 185 64.9
unitig_748.g7709 Utricularia gibba HOM05D004614 ORTHO05D005339 8.4e-40 167.5 185 58.4
Pp3c11_25930 Physcomitrium patens HOM05D004614 ORTHO05D005339 5.4e-39 164.9 182 57.7
Lsat_1_v5_gn_2_6461 Lactuca sativa HOM05D004614 ORTHO05D005339 1.6e-38 163.3 185 62.7
ClCG08G009540 Citrullus lanatus HOM05D004614 ORTHO05D005339 5.6e-36 154.8 161 62.1
TAR381G0464 Trochodendron aralioides HOM05D004614 ORTHO05D005339 6.2e-35 151.4 179 63.7
CARHR292380 Cardamine hirsuta HOM05D004614 ORTHO05D005339 1.1e-34 150.6 80 85.0
Gohir.D05G182900 Gossypium hirsutum HOM05D004614 ORTHO05D005339 6.9e-34 147.9 141 66.7
Gorai.002G118400 Gossypium raimondii HOM05D004614 ORTHO05D005339 6.9e-34 147.9 185 59.5
Gohir.D01G093000 Gossypium hirsutum HOM05D004614 ORTHO05D005339 1.5e-33 146.7 185 58.9
ATR0661G410 Amborella trichopoda HOM05D004614 ORTHO05D005339 4.4e-33 145.2 185 58.9
Atru.chr13.150 Acer truncatum HOM05D004614 ORTHO05D005339 7.6e-33 144.4 143 65.7
EL10Ac1g01976 Beta vulgaris HOM05D004614 ORTHO05D005339 1.7e-32 143.3 80 83.8
PSO541G0908 Papaver somniferum HOM05D004614 ORTHO05D005339 1.7e-32 143.3 185 55.7
PSO675G0524 Papaver somniferum HOM05D004614 ORTHO05D005339 1.7e-32 143.3 185 55.7
SEGI_03937 Sequoiadendron giganteum HOM05D004614 ORTHO05D005339 1.4e-31 140.2 185 57.8
Lj4A12T77 Lonicera japonica HOM05D004614 ORTHO05D005339 2.7e-30 136.0 136 73.5
Nitab4.5_0010763g0030 Nicotiana tabacum HOM05D004614 ORTHO05D005339 8.7e-29 131.0 257 38.9
Nitab4.5_0000588g0160 Nicotiana tabacum HOM05D004614 ORTHO05D005339 4.3e-28 128.6 175 47.4
Nitab4.5_0000699g0050 Nicotiana tabacum HOM05D004614 ORTHO05D005339 6.2e-27 124.8 185 48.6
CSS0047318 Camellia sinensis var. sinensis HOM05D004614 ORTHO05D005339 2.3e-21 106.3 85 61.2
SMO202G0022 Selaginella moellendorffii HOM05D004614 ORTHO05D005339 2.3e-21 106.3 50 88.0
EL10Ac1g01977 Beta vulgaris HOM05D004614 ORTHO05D005339 3.0e-21 105.9 75 66.7
CARHR292370 Cardamine hirsuta HOM05D004614 ORTHO05D005339 3.3e-20 102.4 82 61.0
ClCG08G009480 Citrullus lanatus HOM05D004614 ORTHO05D005339 2.1e-19 99.8 44 97.7
Haze_22759 Corylus avellana HOM05D004614 ORTHO05D005339 8.1e-19 97.8 82 59.8
arahy.Tifrunner.gnm1.ann1.7DZ9XI Arachis hypogaea HOM05D004614 ORTHO05D005339 1.8e-18 96.7 82 58.5
arahy.Tifrunner.gnm1.ann1.MYP9FH Arachis hypogaea HOM05D004614 ORTHO05D005339 1.8e-18 96.7 82 58.5
Zm00001eb002680 Zea mays HOM05D004614 ORTHO05D005339 3.1e-18 95.9 82 57.3
TAR549G0008 Trochodendron aralioides HOM05D006445 ORTHO05D008030 2.4e-15 86.3 191 44.0
TAR633G2087 Trochodendron aralioides HOM05D006445 ORTHO05D008030 2.4e-15 86.3 191 44.0
Ciclev10004554m.g Citrus clementina HOM05D006445 ORTHO05D008030 2.1e-14 83.2 192 40.1
CBR_g19275 Chara braunii HOM05D006445 ORTHO05D008030 1.0e-13 80.9 199 36.7
Cc03_g04450 Coffea canephora HOM05D006445 ORTHO05D008030 1.1e-12 77.4 195 43.6
Cre05.g248000 Chlamydomonas reinhardtii HOM05D004614 ORTHO05D005339 2.5e-12 76.3 185 43.8
PGR031G1697 Punica granatum HOM05D004614 ORTHO05D005339 1.4e-10 70.5 67 94.0
Lj4A12T78 Lonicera japonica HOM05D004614 ORTHO05D005339 1.8e-10 70.1 31 96.8
MD11G1103700 Malus domestica HOM05D004614 ORTHO05D005339 1.8e-10 70.1 30 100.0
Phvul.L001638 Phaseolus vulgaris HOM05D004614 ORTHO05D005339 1.8e-10 70.1 31 96.8
TWI09G0629 Tripterygium wilfordii HOM05D006445 ORTHO05D008030 1.3e-08 63.9 195 37.4
CiPaw.01G193800 Carya illinoinensis HOM05D006445 ORTHO05D008030 6.5e-08 61.6 187 40.6
CANSAT78G1649 Cannabis sativa HOM05D006445 ORTHO05D008030 8.4e-08 61.2 195 37.9
CDE05G0961 Ceratophyllum demersum HOM05D004614 ORTHO05D005339 1.1e-07 60.8 28 82.1
Nitab4.5_0006949g0050 Nicotiana tabacum HOM05D004614 ORTHO05D005339 1.1e-07 60.8 32 81.2
Os11g0586300 Oryza sativa ssp. japonica HOM05D006445 ORTHO05D008030 1.4e-07 60.5 43 55.8
Zm00001eb402600 Zea mays HOM05D004614 ORTHO05D005339 4.2e-07 58.9 32 71.9
CSS0044612 Camellia sinensis var. sinensis HOM05D004614 ORTHO05D005339 9.3e-07 57.8 25 100.0
Cpa.g.sc44.136 Carica papaya HOM05D006445 ORTHO05D008030 9.3e-07 57.8 195 37.9
Manes.03G171500 Manihot esculenta HOM05D006445 ORTHO05D008030 1.2e-06 57.4 195 37.9
SMO351G0143 Selaginella moellendorffii HOM05D006445 ORTHO05D008030 1.6e-06 57.0 197 37.6
AL5G37040 Arabidopsis lyrata HOM05D006445 ORTHO05D008030 2.1e-06 56.6 192 39.1
Carub.0005s2255 Capsella rubella HOM05D006445 ORTHO05D008030 2.7e-06 56.2 192 38.5
Sp3g20620 Schrenkiella parvula HOM05D006445 ORTHO05D008030 2.7e-06 56.2 192 39.1
Migut.G00392 Erythranthe guttata HOM05D006445 ORTHO05D008030 3.5e-06 55.8 195 36.4
Nitab4.5_0006949g0040 Nicotiana tabacum HOM05D004614 ORTHO05D005339 4.6e-06 55.5 24 91.7
AT3G55760 Arabidopsis thaliana HOM05D006445 ORTHO05D008030 6.0e-06 55.1 192 38.5
TAR374G1213 Trochodendron aralioides HOM05D000928 ORTHO05D000023 7.9e-06 54.7 25 92.0


User provided reference genes

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